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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Clemens Groepl $
// $Authors: Eva Lange, Clemens Groepl $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h>
#include <OpenMS/FORMAT/MzMLFile.h>
using namespace std;
using namespace OpenMS;
/////////////////////////////////////////////////////////////
START_TEST(MapAlignmentAlgorithmPoseClustering, "$Id: MapAlignmentAlgorithmPoseClustering_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
MapAlignmentAlgorithmPoseClustering* ptr = 0;
MapAlignmentAlgorithmPoseClustering* nullPointer = 0;
MapAlignmentAlgorithm* base_nullPointer = 0;
START_SECTION((MapAlignmentAlgorithmPoseClustering()))
ptr = new MapAlignmentAlgorithmPoseClustering();
TEST_NOT_EQUAL(ptr, nullPointer)
END_SECTION
START_SECTION((virtual ~MapAlignmentAlgorithmPoseClustering()))
delete ptr;
END_SECTION
START_SECTION((static MapAlignmentAlgorithm* create()))
TEST_NOT_EQUAL(MapAlignmentAlgorithmPoseClustering::create(),base_nullPointer)
END_SECTION
START_SECTION((static String getProductName()))
TEST_EQUAL(MapAlignmentAlgorithmPoseClustering::getProductName(), "pose_clustering")
END_SECTION
START_SECTION((virtual void setReference(Size reference_index=0, const String& reference_file="")))
{
NOT_TESTABLE; // only some internal variables are set
}
END_SECTION
START_SECTION((virtual void alignPeakMaps(std::vector< MSExperiment<> > &, std::vector< TransformationDescription > &)))
{
MzMLFile f;
std::vector< MSExperiment<> > peak_maps(2);
f.load(OPENMS_GET_TEST_DATA_PATH("MapAlignmentAlgorithmPoseClustering_in1.mzML.gz"), peak_maps[0]);
f.load(OPENMS_GET_TEST_DATA_PATH("MapAlignmentAlgorithmPoseClustering_in2.mzML.gz"), peak_maps[1]);
MapAlignmentAlgorithm* alignment = Factory<MapAlignmentAlgorithm>::create("pose_clustering");
std::vector<TransformationDescription> transformations;
// Trafo cannot be computed, due to too few datapoints
// -- the ideal solution would be to fix the trafo estimation
TEST_EXCEPTION(Exception::NotImplemented, alignment->alignPeakMaps(peak_maps,transformations));
}
END_SECTION
START_SECTION((virtual void alignFeatureMaps(std::vector< FeatureMap<> > &, std::vector< TransformationDescription > &)))
{
// Tested extensively in TEST/TOPP
NOT_TESTABLE;
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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