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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Clemens Groepl $
// $Authors: Katharina Albers $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>
///////////////////////////
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h>
using namespace OpenMS;
using namespace std;
namespace OpenMS
{
class MAEA
: public MapAlignmentEvaluationAlgorithm
{
public:
void evaluate(const ConsensusMap&, const ConsensusMap&, const DoubleReal&, const DoubleReal&, const Peak2D::IntensityType&, const bool use_charge, DoubleReal& real)
{
bool x = use_charge;
x=!x;
real = 1.5;
}
};
}
START_TEST(MapAlignmentEvaluation, "$Id MapAlignmentEvaluationAlgorithm_test.C 139 2006-07-14 10:08:39Z ole_st $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
MAEA* ptr = 0;
MAEA* nullPointer = 0;
START_SECTION((MapAlignmentEvaluationAlgorithm()))
ptr = new MAEA();
TEST_NOT_EQUAL(ptr, nullPointer)
END_SECTION
START_SECTION((virtual ~MapAlignmentEvaluationAlgorithm()))
delete ptr;
END_SECTION
START_SECTION((virtual void evaluate(const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, DoubleReal &out)=0))
MAEA maea;
ConsensusMap map1;
ConsensusMap map2;
DoubleReal rt_dev, mz_dev;
Peak2D::IntensityType int_dev;
DoubleReal real;
maea.evaluate(map1, map2, rt_dev, mz_dev, int_dev, false, real);
TEST_EQUAL(real, 1.5)
END_SECTION
START_SECTION((bool isSameHandle(const FeatureHandle &lhs, const FeatureHandle &rhs, const DoubleReal &rt_dev, const DoubleReal &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge)))
{
Feature tmp_feature;
tmp_feature.setRT(100);
tmp_feature.setMZ(555);
tmp_feature.setIntensity(200.0f);
tmp_feature.setCharge(3);
tmp_feature.setUniqueId(1);
Feature tmp_feature2;
tmp_feature2.setRT(101);
tmp_feature2.setMZ(556);
tmp_feature2.setIntensity(1199.0f);
tmp_feature2.setCharge(4);
tmp_feature2.setUniqueId(2);
FeatureHandle a(0,tmp_feature);
FeatureHandle b(0,tmp_feature2);
MAEA maea;
TEST_EQUAL(maea.isSameHandle(a, b, 2, 1.5, 1000, false), true);
TEST_EQUAL(maea.isSameHandle(a, b, 2, 1.5, 1000, true), false);
tmp_feature2.setCharge(3); // now charge is equal
FeatureHandle b2(0,tmp_feature2);
TEST_EQUAL(maea.isSameHandle(a, b2, 2, 1.5, 1000, false), true);
TEST_EQUAL(maea.isSameHandle(a, b2, 2, 1.5, 1000, true), true);
}
END_SECTION
START_SECTION((static void registerChildren()))
{
TEST_STRING_EQUAL(Factory<MapAlignmentEvaluationAlgorithm>::registeredProducts()[0],MapAlignmentEvaluationAlgorithmPrecision::getProductName());
TEST_STRING_EQUAL(Factory<MapAlignmentEvaluationAlgorithm>::registeredProducts()[1],MapAlignmentEvaluationAlgorithmRecall::getProductName());
TEST_EQUAL(Factory<MapAlignmentEvaluationAlgorithm>::registeredProducts().size(),2)
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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