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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/CHEMISTRY/ModificationDefinition.h>
///////////////////////////
using namespace OpenMS;
using namespace std;
START_TEST(ModificationDefinition, "$Id: ModificationDefinition_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
ModificationDefinition* ptr = 0;
ModificationDefinition* nullPointer = 0;
START_SECTION(ModificationDefinition())
{
ptr = new ModificationDefinition();
TEST_NOT_EQUAL(ptr, nullPointer)
}
END_SECTION
START_SECTION((virtual ~ModificationDefinition()))
{
delete ptr;
}
END_SECTION
ptr = new ModificationDefinition();
START_SECTION((ModificationDefinition(const ModificationDefinition &rhs)))
{
ModificationDefinition mod_def;
mod_def.setTermSpecificity(ResidueModification::C_TERM);
mod_def.setFixedModification(true);
ModificationDefinition copy(mod_def);
TEST_EQUAL(mod_def.getTermSpecificity(), copy.getTermSpecificity())
TEST_EQUAL(mod_def.isFixedModification(), copy.isFixedModification())
mod_def.setTermSpecificity(ResidueModification::ANYWHERE);
mod_def.setFixedModification(false);
ModificationDefinition copy2(mod_def);
TEST_EQUAL(mod_def.getTermSpecificity(), copy2.getTermSpecificity())
TEST_EQUAL(mod_def.isFixedModification(), copy2.isFixedModification())
}
END_SECTION
START_SECTION((ModificationDefinition(const String &mod)))
{
ModificationDefinition mod1("Acetyl (N-term)");
TEST_EQUAL(mod1.getModification(), "Acetyl (N-term)");
ModificationDefinition mod2("Oxidation (M)");
TEST_EQUAL(mod2.getModification(), "Oxidation (M)");
ModificationDefinition mod3("Carboxymethyl (C)");
TEST_EQUAL(mod3.getModification(), "Carboxymethyl (C)");
}
END_SECTION
START_SECTION((void setTermSpecificity(ResidueModification::Term_Specificity pos)))
{
ptr->setTermSpecificity(ResidueModification::ANYWHERE);
TEST_EQUAL(ptr->getTermSpecificity(), ResidueModification::ANYWHERE);
ptr->setTermSpecificity(ResidueModification::C_TERM);
TEST_EQUAL(ptr->getTermSpecificity(), ResidueModification::C_TERM);
}
END_SECTION
START_SECTION((ResidueModification::Term_Specificity getTermSpecificity() const ))
{
ptr->setTermSpecificity(ResidueModification::N_TERM);
TEST_EQUAL(ptr->getTermSpecificity(), ResidueModification::N_TERM)
}
END_SECTION
START_SECTION((void setFixedModification(bool fixed)))
{
ptr->setFixedModification(true);
TEST_EQUAL(ptr->isFixedModification(), true)
ptr->setFixedModification(false);
TEST_EQUAL(ptr->isFixedModification(), false)
}
END_SECTION
START_SECTION((bool isFixedModification() const ))
{
// tested above
NOT_TESTABLE
}
END_SECTION
START_SECTION((void setMaxOccurences(UInt num)))
{
ptr->setMaxOccurences(1);
TEST_EQUAL(ptr->getMaxOccurences(), 1)
ptr->setMaxOccurences(1000);
TEST_EQUAL(ptr->getMaxOccurences(), 1000)
}
END_SECTION
START_SECTION((UInt getMaxOccurences() const ))
{
// tested above
NOT_TESTABLE
}
END_SECTION
START_SECTION((String getModification() const ))
{
ModificationDefinition mod1;
mod1.setModification("Acetyl (N-term)");
TEST_EQUAL(mod1.getModification(), "Acetyl (N-term)")
mod1.setModification("Oxidation (M)");
TEST_EQUAL(mod1.getModification(), "Oxidation (M)")
}
END_SECTION
START_SECTION((void setModification(const String &modification)))
{
// tested above
NOT_TESTABLE
}
END_SECTION
START_SECTION((ModificationDefinition& operator=(const ModificationDefinition &element)))
{
ModificationDefinition mod_def;
mod_def.setTermSpecificity(ResidueModification::C_TERM);
mod_def.setFixedModification(true);
*ptr = mod_def;
TEST_EQUAL(mod_def.getTermSpecificity(), ptr->getTermSpecificity())
TEST_EQUAL(mod_def.isFixedModification(), ptr->isFixedModification())
mod_def.setTermSpecificity(ResidueModification::ANYWHERE);
mod_def.setFixedModification(false);
*ptr = mod_def;
TEST_EQUAL(mod_def.getTermSpecificity(), ptr->getTermSpecificity())
TEST_EQUAL(mod_def.isFixedModification(), ptr->isFixedModification())
}
END_SECTION
START_SECTION((bool operator==(const ModificationDefinition &rhs) const ))
{
ModificationDefinition m1, m2;
TEST_EQUAL(m1 == m2, true)
m1.setFixedModification(false);
TEST_EQUAL(m1 == m2, false)
m1.setFixedModification(true);
m1.setMaxOccurences(15);
TEST_EQUAL(m1 == m2, false)
m1.setMaxOccurences(0);
m1.setModification("Oxidation (M)");
TEST_EQUAL(m1 == m2, false)
m2.setModification("Oxidation (M)");
TEST_EQUAL(m1 == m2, true)
m1.setTermSpecificity(ResidueModification::N_TERM);
TEST_EQUAL(m1 == m2, false)
}
END_SECTION
START_SECTION((bool operator!=(const ModificationDefinition &rhs) const ))
{
ModificationDefinition m1, m2;
TEST_EQUAL(m1 != m2, false)
m1.setFixedModification(false);
TEST_EQUAL(m1 != m2, true)
m1.setFixedModification(true);
m1.setMaxOccurences(15);
TEST_EQUAL(m1 != m2, true)
m1.setMaxOccurences(0);
m1.setModification("Oxidation (M)");
TEST_EQUAL(m1 != m2, true)
m2.setModification("Oxidation (M)");
TEST_EQUAL(m1 != m2, false)
m1.setTermSpecificity(ResidueModification::N_TERM);
TEST_EQUAL(m1 != m2, true)
}
END_SECTION
START_SECTION((bool operator<(const OpenMS::ModificationDefinition &) const ))
{
ModificationDefinition m1, m2;
m1.setModification("Oxidation (M)");
m2.setModification("Carboxymethyl (C)");
TEST_EQUAL(m1 < m2, false)
TEST_EQUAL(m1 < m1, false)
TEST_EQUAL(m2 < m1, true)
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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