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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/METADATA/Modification.h>
#include <OpenMS/METADATA/Tagging.h>
#include <sstream>
///////////////////////////
START_TEST(Modification, "$Id: Modification_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
using namespace OpenMS;
using namespace std;
TOLERANCE_ABSOLUTE(0.001)
// default ctor
Modification* dv_ptr = 0;
Modification* dv_nullPointer = 0;
START_SECTION((Modification()))
dv_ptr = new Modification;
TEST_NOT_EQUAL(dv_ptr, dv_nullPointer)
END_SECTION
// destructor
START_SECTION((virtual ~Modification()))
delete dv_ptr;
END_SECTION
START_SECTION((const String& getReagentName() const))
Modification s;
TEST_EQUAL(s.getReagentName(),"")
END_SECTION
START_SECTION((DoubleReal getMass() const ))
Modification s;
TEST_REAL_SIMILAR(s.getMass(),0.0)
END_SECTION
START_SECTION((const SpecificityType& getSpecificityType() const))
Modification s;
TEST_EQUAL(s.getSpecificityType(),Modification::AA)
END_SECTION
START_SECTION((const String& getAffectedAminoAcids() const))
Modification s;
TEST_EQUAL(s.getAffectedAminoAcids(),"")
END_SECTION
START_SECTION((void setReagentName(const String& reagent_name)))
Modification s;
s.setReagentName("TTEST");
TEST_EQUAL(s.getReagentName(),"TTEST")
END_SECTION
START_SECTION((void setMass(DoubleReal mass)))
Modification s;
s.setMass(11.9);
TEST_REAL_SIMILAR(s.getMass(),11.9)
END_SECTION
START_SECTION((void setSpecificityType(const SpecificityType& specificity_type)))
Modification s;
s.setSpecificityType(Modification::CTERM);
TEST_EQUAL(s.getSpecificityType(),Modification::CTERM)
END_SECTION
START_SECTION((void setAffectedAminoAcids(const String& affected_amino_acids)))
Modification s;
s.setAffectedAminoAcids("ABCDE");
TEST_EQUAL(s.getAffectedAminoAcids(),"ABCDE")
END_SECTION
//getType
START_SECTION([EXTRA] getType)
Modification s;
TEST_EQUAL(s.getType(),"Modification")
END_SECTION
//copy ctr
START_SECTION((Modification(const Modification&)))
Modification s;
//set
s.setReagentName("TTEST");
s.setMass(11.9);
s.setSpecificityType(Modification::AA);
s.setAffectedAminoAcids("ABCDE");
s.setMetaValue("color",String("red"));
//copy
Modification s2(s);
//get
TEST_EQUAL(s.getReagentName(),"TTEST")
TEST_REAL_SIMILAR(s.getMass(),11.9)
TEST_EQUAL(s.getSpecificityType(),Modification::AA)
TEST_EQUAL(s.getAffectedAminoAcids(),"ABCDE")
TEST_EQUAL(String(s.getMetaValue("color")),"red")
END_SECTION
//assignment operator
START_SECTION((Modification& operator=(const Modification&)))
Modification s,s2;
//set
s.setReagentName("TTEST");
s.setMass(11.9);
s.setSpecificityType(Modification::AA);
s.setAffectedAminoAcids("ABCDE");
s.setMetaValue("color",String("red"));
//assign
s2 = s;
//get
TEST_EQUAL(s.getReagentName(),"TTEST")
TEST_REAL_SIMILAR(s.getMass(),11.9)
TEST_EQUAL(s.getSpecificityType(),Modification::AA)
TEST_EQUAL(s.getAffectedAminoAcids(),"ABCDE")
TEST_EQUAL(String(s.getMetaValue("color")),"red")
END_SECTION
//clone
START_SECTION((virtual SampleTreatment* clone() const ))
Modification s;
SampleTreatment* st1;
SampleTreatment* st;
Modification* dp;
//set
s.setReagentName("TTEST");
s.setMass(11.9);
s.setSpecificityType(Modification::AA);
s.setAffectedAminoAcids("ABCDE");
s.setMetaValue("color",String("red"));
//assign
st1 = &s;
st = st1->clone();
dp = dynamic_cast<Modification*>(st);
//get
TEST_EQUAL(dp->getReagentName(),"TTEST")
TEST_REAL_SIMILAR(dp->getMass(),11.9)
TEST_EQUAL(dp->getSpecificityType(),Modification::AA)
TEST_EQUAL(dp->getAffectedAminoAcids(),"ABCDE")
TEST_EQUAL(String(dp->getMetaValue("color")),"red")
END_SECTION
START_SECTION((virtual bool operator==(const SampleTreatment &rhs) const ))
Modification empty,edit;
TEST_EQUAL(edit==empty, true);
edit.setMass(11.9);
TEST_EQUAL(edit==empty, false);
edit = empty;
TEST_EQUAL(edit==empty, true);
edit.setSpecificityType(Modification::CTERM);
TEST_EQUAL(edit==empty, false);
edit = empty;
TEST_EQUAL(edit==empty, true);
edit.setAffectedAminoAcids("ABCDE");
TEST_EQUAL(edit==empty, false);
edit = empty;
TEST_EQUAL(edit==empty, true);
edit.setMetaValue("color",String("red"));
TEST_EQUAL(edit==empty, false);
edit = empty;
TEST_EQUAL(edit==empty, true);
Tagging m;
TEST_EQUAL(m==empty, false);
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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