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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/ANALYSIS/ID/PILISScoring.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
///////////////////////////
START_TEST(PILISScoring_test.C, "$Id: PILISScoring_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
using namespace OpenMS;
using namespace std;
PILISScoring* ptr = 0;
PILISScoring* nullPointer = 0;
String filename(OPENMS_GET_TEST_DATA_PATH("IDFilter_test2.idXML"));
START_SECTION(PILISScoring())
ptr = new PILISScoring();
TEST_NOT_EQUAL(ptr, nullPointer)
END_SECTION
START_SECTION(~PILISScoring())
delete ptr;
END_SECTION
ptr = new PILISScoring();
START_SECTION(PILISScoring(const PILISScoring& source))
PILISScoring copy(*ptr);
TEST_EQUAL(copy.getParameters(), ptr->getParameters())
END_SECTION
START_SECTION(PILISScoring& operator = (const PILISScoring& source))
PILISScoring copy;
copy = *ptr;
TEST_EQUAL(copy.getParameters(), ptr->getParameters())
END_SECTION
START_SECTION(void getScores(std::vector<PeptideIdentification>& ids))
vector<PeptideIdentification> ids;
vector<ProteinIdentification> prot_ids;
String document_id;
IdXMLFile().load(filename, prot_ids, ids, document_id);
ptr->getScores(ids);
for (vector<PeptideIdentification>::const_iterator it = ids.begin(); it != ids.end(); ++it)
{
TEST_EQUAL(it->getScoreType(), "PILIS-E-value")
}
END_SECTION
START_SECTION(void getScore(PeptideIdentification& id))
vector<PeptideIdentification> ids;
vector<ProteinIdentification> prot_ids;
String document_id;
IdXMLFile().load(filename, prot_ids, ids, document_id);
ptr->getScore(ids[0]);
TEST_REAL_SIMILAR(ids[0].getHits().begin()->getScore(), 33.85)
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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