File: PepNovoInfile_test_template2.txt

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# Fixed PTMs
#AA  offset      type    locations  symbol  PTM name
K   10.3   FIXED   ALL   K+10   PTM_0
R   10.3   FIXED   ALL   R+10   PTM_0
L   10.3   FIXED   ALL   L+10   PTM_0
N   10.3   FIXED   ALL   N+10   PTM_0
H   10.3   FIXED   ALL   H+10   PTM_0

# Optional PTMs
C   14.01565   OPTIONAL   ALL   C+14   Methylation
H   14.01565   OPTIONAL   ALL   H+14   Methylation
K   14.01565   OPTIONAL   ALL   K+14   Methylation
N   14.01565   OPTIONAL   ALL   N+14   Methylation
Q   14.01565   OPTIONAL   ALL   Q+14   Methylation
R   14.01565   OPTIONAL   ALL   R+14   Methylation
I   14.01565   OPTIONAL   ALL   I+14   Methylation
L   14.01565   OPTIONAL   ALL   L+14   Methylation
D   14.01565   OPTIONAL   ALL   D+14   Methylation
E   14.01565   OPTIONAL   ALL   E+14   Methylation
S   14.01565   OPTIONAL   ALL   S+14   Methylation
T   14.01565   OPTIONAL   ALL   T+14   Methylation
C   16   OPTIONAL   ALL   C+16   PTM_2
S   79.96635   OPTIONAL   ALL   S+80   Phosphorylation
T   79.96635   OPTIONAL   ALL   T+80   Phosphorylation
Y   79.96635   OPTIONAL   ALL   Y+80   Phosphorylation
D   79.96635   OPTIONAL   ALL   D+80   Phosphorylation
H   79.96635   OPTIONAL   ALL   H+80   Phosphorylation
C   79.96635   OPTIONAL   ALL   C+80   Phosphorylation
R   79.96635   OPTIONAL   ALL   R+80   Phosphorylation

# Terminal PTMs
C_TERM   -16   OPT   C_TERM   ยง-16   PTM_5
N_TERM   43.00582   OPTIONAL   N_TERM   ^+43   Carbamylation
N_TERM   -16   OPTIONAL   N_TERM   ^-16   PTM_6