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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Nico Pfeifer $
// $Authors: $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <string>
#include <OpenMS/METADATA/ProteinHit.h>
#include <OpenMS/DATASTRUCTURES/String.h>
///////////////////////////
START_TEST(ProteinHit, "$Id: ProteinHit_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
using namespace OpenMS;
using namespace std;
Real score = 4.4f;
UInt rank = 3;
String sequence = "ARRAY";
String accession = "PROOE34";
ProteinHit* ptr = 0;
ProteinHit* nullPointer = 0;
START_SECTION(ProteinHit())
ptr = new ProteinHit();
TEST_NOT_EQUAL(ptr, nullPointer)
END_SECTION
START_SECTION(~ProteinHit())
ptr = new ProteinHit();
delete ptr;
END_SECTION
START_SECTION((ProteinHit(DoubleReal score, UInt rank, String accession, String sequence)))
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getScore(), score)
TEST_EQUAL(hit.getRank(), rank)
TEST_EQUAL(hit.getAccession(), accession)
TEST_EQUAL(hit.getSequence(), sequence)
TEST_EQUAL(hit.getCoverage(), -1)
END_SECTION
START_SECTION(ProteinHit(const ProteinHit& source))
ProteinHit source;
source.setScore(score);
source.setRank(rank);
source.setAccession(accession);
source.setSequence(sequence);
source.setMetaValue("label",17);
source.setCoverage(123.123);
ProteinHit hit(source);
TEST_EQUAL(hit.getScore(), score)
TEST_EQUAL(hit.getRank(), rank)
TEST_EQUAL(hit.getAccession(), accession)
TEST_EQUAL(hit.getSequence(), sequence)
TEST_EQUAL((UInt)hit.getMetaValue("label"),17)
TEST_EQUAL(hit.getCoverage(), 123.123)
END_SECTION
START_SECTION(ProteinHit& operator=(const ProteinHit& source))
ProteinHit hit;
ProteinHit hit2(score, rank, accession, sequence);
hit2.setMetaValue("label",17);
hit2.setCoverage(123.123);
hit = hit2;
TEST_EQUAL(hit.getScore(), score)
TEST_EQUAL(hit.getRank(), rank)
TEST_EQUAL(hit.getAccession(), accession)
TEST_EQUAL(hit.getSequence(), sequence)
TEST_EQUAL((UInt)hit.getMetaValue("label"),17)
TEST_EQUAL(hit.getCoverage(), 123.123)
END_SECTION
START_SECTION(ProteinHit& operator= (const MetaInfoInterface& source))
ProteinHit hit(score, rank, accession, sequence);
hit.setCoverage(123.123);
MetaInfoInterface meta;
meta.setMetaValue("label",17);
hit = meta;
TEST_EQUAL(hit.getScore(), score)
TEST_EQUAL(hit.getRank(), rank)
TEST_EQUAL(hit.getAccession(), accession)
TEST_EQUAL(hit.getSequence(), sequence)
TEST_EQUAL(hit.getCoverage(), 123.123)
TEST_EQUAL((UInt)hit.getMetaValue("label"),17)
END_SECTION
START_SECTION(bool operator == (const ProteinHit& rhs) const)
ProteinHit hit, hit2;
TEST_EQUAL(hit==hit2,true);
hit.setScore(score);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
hit.setRank(rank);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
hit.setAccession(accession);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
hit.setSequence(sequence);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
hit.setMetaValue("label",17);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
hit.setCoverage(123.123);
TEST_EQUAL(hit==hit2,false);
hit = hit2;
END_SECTION
START_SECTION(bool operator != (const ProteinHit& rhs) const)
ProteinHit hit, hit2;
TEST_EQUAL(hit!=hit2,false);
hit.setScore(score);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
hit.setRank(rank);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
hit.setAccession(accession);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
hit.setSequence(sequence);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
hit.setMetaValue("label",17);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
hit.setCoverage(123.123);
TEST_EQUAL(hit!=hit2,true);
hit = hit2;
END_SECTION
START_SECTION(const String& getAccession() const)
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getAccession(), accession)
END_SECTION
START_SECTION(const String& getSequence() const)
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getSequence(), sequence)
END_SECTION
START_SECTION(Real getScore() const)
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getScore(), score)
END_SECTION
START_SECTION(UInt getRank() const)
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getRank(), rank)
END_SECTION
START_SECTION(DoubleReal getCoverage() const)
ProteinHit hit(score, rank, accession, sequence);
TEST_EQUAL(hit.getCoverage(), -1)
hit.setCoverage(123.123);
TEST_EQUAL(hit.getCoverage(), 123.123)
END_SECTION
START_SECTION(void setRank(UInt newrank))
ProteinHit hit;
hit.setRank(rank);
TEST_EQUAL(hit.getRank(), rank)
END_SECTION
START_SECTION(void setScore(const DoubleReal score))
ProteinHit hit;
hit.setScore(score);
TEST_EQUAL(hit.getScore(), score);
END_SECTION
START_SECTION(void setSequence(const String& sequence))
ProteinHit hit;
hit.setSequence(sequence);
TEST_EQUAL(hit.getSequence(), sequence)
END_SECTION
START_SECTION(void setAccession(const String& accession))
ProteinHit hit;
hit.setAccession(accession);
TEST_EQUAL(hit.getAccession(), accession)
END_SECTION
START_SECTION(void setCoverage(const DoubleReal coverage))
ProteinHit hit;
hit.setCoverage(123.123);
TEST_EQUAL(hit.getCoverage(), 123.123)
END_SECTION
START_SECTION(([ProteinHit::ScoreLess] template < typename Arg > bool operator()(const Arg &a, const Arg &b)))
{
ProteinHit a,b;
a.setScore(10);
b.setScore(20);
TEST_EQUAL(ProteinHit::ScoreLess().operator()(a,b), true)
TEST_EQUAL(ProteinHit::ScoreLess().operator()(b,a), false)
TEST_EQUAL(ProteinHit::ScoreLess().operator()(a,a), false)
}
END_SECTION
START_SECTION(([ProteinHit::ScoreMore] template < typename Arg > bool operator()(const Arg &a, const Arg &b)))
{
ProteinHit a,b;
a.setScore(20);
b.setScore(10);
TEST_EQUAL(ProteinHit::ScoreMore().operator()(a,b), true)
TEST_EQUAL(ProteinHit::ScoreMore().operator()(b,a), false)
TEST_EQUAL(ProteinHit::ScoreMore().operator()(a,a), false)
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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