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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Lars Nilse $
// $Authors: Lars Nilse, Holger Plattfaut $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/FILTERING/DATAREDUCTION/SILACFilter.h>
///////////////////////////
using namespace OpenMS;
using namespace std;
START_TEST(SILACFilter, "$Id: SILACFilter_test.C 10915 2013-04-04 20:14:57Z aiche $")
std::vector<DoubleReal> mass_separations;
mass_separations.push_back(4);
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
START_SECTION((SILACFilter(std::vector< DoubleReal > mass_separations, Int charge, DoubleReal model_deviation, Int isotopes_per_peptide, DoubleReal intensity_cutoff, DoubleReal intensity_correlation, bool allow_missing_peaks)))
{
SILACFilter f(mass_separations, 1, 1, 3, 0, 0, false);
TEST_EQUAL(f.getCharge(), 1);
}
END_SECTION
START_SECTION((std::vector<DoubleReal> getPeakPositions()))
{
SILACFilter f(mass_separations, 1, 1, 3, 0, 0, false);
// XXX: Segfaults
// TEST_EQUAL(f.getPeakPositions().size(), 0);
}
END_SECTION
START_SECTION((const std::vector<DoubleReal>& getExpectedMzShifts()))
{
const UInt peaks_per_peptide = 3;
SILACFilter f(mass_separations, 1, 1, peaks_per_peptide, 0, 0, false);
TEST_EQUAL(f.getExpectedMzShifts().size(), (mass_separations.size() + 1) * peaks_per_peptide);
}
END_SECTION
START_SECTION((std::vector<SILACPattern>& getElements()))
{
SILACFilter f(mass_separations, 1, 1, 3, 0, 0, false);
TEST_EQUAL(f.getElements().size(), 0);
}
END_SECTION
START_SECTION((Int getCharge()))
{
SILACFilter f(mass_separations, 1, 1, 3, 0, 0, false);
TEST_EQUAL(f.getCharge(), 1);
}
END_SECTION
START_SECTION((std::vector<DoubleReal>& getMassSeparations()))
{
SILACFilter f(mass_separations, 1, 1, 3, 0, 0, false);
TEST_EQUAL(f.getMassSeparations() == mass_separations, true);
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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