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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/FORMAT/SpecArrayFile.h>
///////////////////////////
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
using namespace OpenMS;
using namespace std;
START_TEST(SpecArrayFile, "$Id: SpecArrayFile_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
SpecArrayFile* ptr = 0;
SpecArrayFile* null_ptr = 0;
START_SECTION(SpecArrayFile())
{
ptr = new SpecArrayFile();
TEST_NOT_EQUAL(ptr, null_ptr)
}
END_SECTION
START_SECTION(virtual ~SpecArrayFile())
{
delete ptr;
}
END_SECTION
START_SECTION((template < typename FeatureMapType > void load(const String &filename, FeatureMapType &feature_map)))
{
SpecArrayFile f;
FeatureMap<> fm;
f.load(OPENMS_GET_TEST_DATA_PATH("SpecArrayFile_test_1.peplist"), fm);
TEST_EQUAL(fm.size(),2)
ABORT_IF(fm.size()!=2)
TEST_EQUAL(fm[0].getRT(), 60.1*60)
TEST_REAL_SIMILAR(fm[0].getMZ(), 500.1)
TEST_EQUAL(fm[0].getIntensity(), 4343534)
TEST_EQUAL(fm[0].getCharge(), 5)
TEST_EQUAL(double(fm[0].getMetaValue("s/n")), 3.2)
TEST_EQUAL(fm[1].getRT(), 40.1*60)
TEST_REAL_SIMILAR(fm[1].getMZ(), 700.1 )
TEST_EQUAL(fm[1].getIntensity(), 222432)
TEST_EQUAL(fm[1].getCharge(), 3)
TEST_EQUAL(double(fm[1].getMetaValue("s/n")), 2.2)
TEST_EXCEPTION(Exception::ParseError, f.load(OPENMS_GET_TEST_DATA_PATH("SpecArrayFile_test_2.peplist"), fm));
TEST_EXCEPTION(Exception::FileNotFound, f.load(OPENMS_GET_TEST_DATA_PATH("SpecArrayFile_test_2_doesnotexist.peplist"), fm));
}
END_SECTION
START_SECTION((template < typename SpectrumType > void store(const String &filename, const SpectrumType &spectrum) const ))
{
SpecArrayFile f;
MSSpectrum<> spec;
TEST_EXCEPTION(Exception::NotImplemented, f.store("bla", spec))
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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