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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/FORMAT/TraMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
using namespace OpenMS;
using namespace std;
START_TEST(TraMLFile, "$Id: TraMLFile_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
TraMLFile * ptr = 0;
TraMLFile * nullPointer = 0;
START_SECTION((TraMLFile()))
{
ptr = new TraMLFile;
TEST_NOT_EQUAL(ptr, nullPointer)
}
END_SECTION
START_SECTION((~TraMLFile()))
{
delete ptr;
}
END_SECTION
START_SECTION((void load(const String &filename, TargetedExperiment & id)))
{
TraMLFile file;
TargetedExperiment exp;
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp);
}
END_SECTION
START_SECTION((void store(const String &filename, const TargetedExperiment &id) const))
{
TraMLFile file;
//load map
TargetedExperiment exp_original;
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp_original);
//store map
std::string tmp_filename;
NEW_TMP_FILE(tmp_filename);
file.store(tmp_filename, exp_original);
//file.store("include.traML", TargetedExperiment());
//load written map
TargetedExperiment exp;
file.load(tmp_filename, exp);
//test if everything worked
TEST_EQUAL(exp == exp_original, true)
}
END_SECTION
START_SECTION((void equal()))
{
TraMLFile file;
TargetedExperiment exp_original;
TargetedExperiment exp_second;
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp_original);
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp_second);
TEST_EQUAL(exp_second == exp_original, true)
}
END_SECTION
START_SECTION((void assign()))
{
TraMLFile file;
//load map
TargetedExperiment exp_original;
TargetedExperiment exp_added;
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp_original);
//store map
std::string tmp_filename;
NEW_TMP_FILE(tmp_filename);
exp_added = exp_original;
TEST_EQUAL(exp_original.getTargetCVTerms().getCVTerms().size(), 1)
TEST_EQUAL(exp_added.getTargetCVTerms().getCVTerms().size(), 1)
TEST_EQUAL(exp_added == exp_original, true)
}
END_SECTION
START_SECTION((void add()))
{
TraMLFile file;
//load map
TargetedExperiment exp_original;
TargetedExperiment exp_added;
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), exp_original);
//store map
std::string tmp_filename;
NEW_TMP_FILE(tmp_filename);
exp_added += exp_original;
TEST_EQUAL(exp_added == exp_original, true)
}
END_SECTION
START_SECTION([EXTRA] bool isValid(const String & filename, std::ostream & os = std::cerr))
{
std::string tmp_filename;
TraMLFile file;
TargetedExperiment e;
//written empty file
NEW_TMP_FILE(tmp_filename);
file.store(tmp_filename, e);
TEST_EQUAL(file.isValid(tmp_filename), true);
//written filled file
NEW_TMP_FILE(tmp_filename);
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), e);
file.store(tmp_filename, e);
TEST_EQUAL(file.isValid(tmp_filename), true);
}
END_SECTION
START_SECTION(bool isSemanticallyValid(const String & filename, StringList & errors, StringList & warnings))
{
std::string tmp_filename;
TraMLFile file;
StringList errors, warnings;
TargetedExperiment e;
//written empty file
NEW_TMP_FILE(tmp_filename);
file.store(tmp_filename, e);
TEST_EQUAL(file.isSemanticallyValid(tmp_filename, errors, warnings), true);
TEST_EQUAL(errors.size(), 0)
TEST_EQUAL(warnings.size(), 0)
//written filled file
NEW_TMP_FILE(tmp_filename);
file.load(OPENMS_GET_TEST_DATA_PATH("ToyExample1.traML"), e);
file.store(tmp_filename, e);
//TEST_EQUAL(file.isSemanticallyValid(tmp_filename, errors, warnings),true);
TEST_EQUAL(errors.size(), 0)
TEST_EQUAL(warnings.size(), 0)
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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