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<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="http://open-ms.sourceforge.net/XSL/IdXML.xsl" ?>
<IdXML version="1.2" id="LSID1234" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/SCHEMAS/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<SearchParameters id="SP_0" db="MSDB" db_version="1.0" taxonomy="" mass_type="average" charges="+1, +2" enzyme="trypsin" missed_cleavages="0" precursor_peak_tolerance="1" peak_mass_tolerance="0.3" >
</SearchParameters>
<SearchParameters id="SP_1" db="MSDB" db_version="1.1" taxonomy="" mass_type="monoisotopic" charges="+1, +2, +3" enzyme="unknown_enzyme" missed_cleavages="0" precursor_peak_tolerance="1" peak_mass_tolerance="0.3" >
<FixedModification name="Fixed" />
<FixedModification name="Fixed2" />
<VariableModification name="Variable" />
<VariableModification name="Variable2" />
</SearchParameters>
<IdentificationRun date="2006-01-12T12:13:14" search_engine="Mascot" search_engine_version="2.1.0" search_parameters_ref="SP_0" >
<ProteinIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
<ProteinHit id="PH_0" accession="PROT1" score="34.4" sequence="ABCDEFG" >
<UserParam type="string" name="name" value="ProteinHit"/>
</ProteinHit>
<ProteinHit id="PH_1" accession="PROT2" score="24.4" sequence="ABCDEFG" >
</ProteinHit>
<UserParam type="string" name="name" value="ProteinIdentification"/>
<UserParam type="string" name="protein_group_0" value="0.88,PH_0,PH_1"/>
<UserParam type="string" name="indistinguishable_proteins_0" value="0,PH_0,PH_1"/>
</ProteinIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="false" significance_threshold="0" MZ="675.9" RT="1234.5" spectrum_reference="17" >
<PeptideHit score="0.9" sequence="PEP1" charge="1" aa_before="A" aa_after="B" protein_refs="PH_0 PH_1" >
<UserParam type="string" name="name" value="PeptideHit"/>
</PeptideHit>
<PeptideHit score="1.4" sequence="PEP2" charge="1" >
</PeptideHit>
<UserParam type="string" name="name" value="PeptideIdentification"/>
</PeptideIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
<PeptideHit score="44.4" sequence="PEP3" charge="2" >
</PeptideHit>
<PeptideHit score="33.3" sequence="PEP4" charge="2" >
</PeptideHit>
</PeptideIdentification>
</IdentificationRun>
<IdentificationRun date="2007-01-12T12:13:14" search_engine="Mascot" search_engine_version="2.1.1" search_parameters_ref="SP_1" >
<ProteinIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
<ProteinHit id="PH_2" accession="PROT3" score="100.0" sequence="" >
</ProteinHit>
</ProteinIdentification>
<PeptideIdentification score_type="MOWSE" higher_score_better="true" significance_threshold="0" >
<PeptideHit score="1.4" sequence="PEP5" charge="1" protein_refs="PH_2" >
</PeptideHit>
</PeptideIdentification>
</IdentificationRun>
</IdXML>
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