File: InternalCalibration_2.idXML

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<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="http://open-ms.sourceforge.net/XSL/IdXML.xsl" ?>
<IdXML version="1.2" xsi:noNamespaceSchemaLocation="http://open-ms.sourceforge.net/SCHEMAS/IdXML_1_2.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
	<SearchParameters id="SP_0" db="ProtStandard" db_version="ups1-kt1.fasta" taxonomy="All entries" mass_type="monoisotopic" charges="" enzyme="trypsin" missed_cleavages="1" precursor_peak_tolerance="10" peak_mass_tolerance="0.4" >
		<FixedModification name="Carbamidomethyl (C)" />
		<VariableModification name="Oxidation (M)" />
		<VariableModification name="Oxidation (W)" />
	</SearchParameters>
	<IdentificationRun date="2009-10-12T13:33:49" search_engine="Mascot" search_engine_version="2.2.04" search_parameters_ref="SP_0" >
		<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="27" MZ="688.04" RT="1182.23" >
				<PeptideHit score="0" sequence="VVDLM(Oxidation)VHMASKE" charge="2" >
					<userParam type="float" name="Mascot_score" value="58.12"/>
					<userParam type="float" name="homology_threshold" value="0"/>
					<userParam type="float" name="identity_threshold" value="27"/>
					<userParam type="float" name="EValue" value="4.4e-05"/>
				</PeptideHit>
			</PeptideIdentification>
			<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="24" MZ="720.39" RT="1229.42" >
				<PeptideHit score="0" sequence="GGADATEDVTAVEVDPADRNR" charge="3" >
					<userParam type="float" name="Mascot_score" value="41.41"/>
					<userParam type="float" name="homology_threshold" value="24"/>
					<userParam type="float" name="identity_threshold" value="28"/>
					<userParam type="float" name="EValue" value="0.0024"/>
				</PeptideHit>
			</PeptideIdentification>
			<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="25" MZ="927.46" RT="1375.28" >
				<PeptideHit score="0.0101920815366523" sequence="YLYEIAR" charge="1" >
					<userParam type="float" name="Mascot_score" value="23.57"/>
					<userParam type="float" name="homology_threshold" value="25"/>
					<userParam type="float" name="identity_threshold" value="27"/>
					<userParam type="float" name="EValue" value="0.13"/>
				</PeptideHit>
			</PeptideIdentification>
			<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="15" MZ="1052.28" RT="2126.71" >
				<PeptideHit score="0" sequence="GIDALPLTGQYTHYALNKK" charge="2" >
					<userParam type="float" name="Mascot_score" value="37.76"/>
					<userParam type="float" name="homology_threshold" value="15"/>
					<userParam type="float" name="identity_threshold" value="25"/>
					<userParam type="float" name="EValue" value="0.003"/>
				</PeptideHit>
			</PeptideIdentification>
			<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="23" MZ="1224.77" RT="2250.93" >
				<PeptideHit score="0" sequence="VIPAADLSEQISTAGTEASGTGNMK" charge="2" >
					<userParam type="float" name="Mascot_score" value="107.02"/>
					<userParam type="float" name="homology_threshold" value="23"/>
					<userParam type="float" name="identity_threshold" value="26"/>
					<userParam type="float" name="EValue" value="4e-10"/>
				</PeptideHit>
			</PeptideIdentification>
			<PeptideIdentification identification_run_ref="PI_0" score_type="q-value" higher_score_better="false" significance_threshold="17" MZ="998.42" RT="2303.35" >
				<PeptideHit score="0.00830696202531645" sequence="DLTDYLMK" charge="1" >
					<userParam type="float" name="Mascot_score" value="23.98"/>
					<userParam type="float" name="homology_threshold" value="17"/>
					<userParam type="float" name="identity_threshold" value="26"/>
					<userParam type="float" name="EValue" value="0.091"/>
				</PeptideHit>
			</PeptideIdentification>
	</IdentificationRun>
</IdXML>