File: OMSSAXMLFile_test_1.xml

package info (click to toggle)
openms 1.11.1-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 436,688 kB
  • ctags: 150,907
  • sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (440 lines) | stat: -rw-r--r-- 18,903 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
<?xml version="1.0"?>
<MSResponse
    xmlns="http://www.ncbi.nlm.nih.gov"
    xmlns:xs="http://www.w3.org/2001/XMLSchema-instance"
    xs:schemaLocation="http://www.ncbi.nlm.nih.gov OMSSA.xsd"
>
  <MSResponse_hitsets>
    <MSHitSet>
      <MSHitSet_number>1</MSHitSet_number>
      <MSHitSet_hits>
        <MSHits>
          <MSHits_evalue>0.000577565403218471</MSHits_evalue>
          <MSHits_pvalue>1.30821853998612e-08</MSHits_pvalue>
          <MSHits_charge>1</MSHits_charge>
          <MSHits_pephits>
            <MSPepHit>
              <MSPepHit_start>0</MSPepHit_start>
              <MSPepHit_stop>8</MSPepHit_stop>
              <MSPepHit_accession>CRHU2</MSPepHit_accession>
              <MSPepHit_defline>carbonate dehydratase (EC 4.2.1.1) II [validated] - human</MSPepHit_defline>
              <MSPepHit_protlength>260</MSPepHit_protlength>
              <MSPepHit_oid>1602</MSPepHit_oid>
            </MSPepHit>
            <MSPepHit>
              <MSPepHit_start>0</MSPepHit_start>
              <MSPepHit_stop>8</MSPepHit_stop>
              <MSPepHit_accession>AAO85140</MSPepHit_accession>
              <MSPepHit_defline>AY240020 NID:  - Bos taurus</MSPepHit_defline>
              <MSPepHit_protlength>260</MSPepHit_protlength>
              <MSPepHit_oid>318026</MSPepHit_oid>
            </MSPepHit>
            <MSPepHit>
              <MSPepHit_start>0</MSPepHit_start>
              <MSPepHit_stop>8</MSPepHit_stop>
              <MSPepHit_accession>AAH11949</MSPepHit_accession>
              <MSPepHit_defline>BC011949 NID:  - Homo sapiens</MSPepHit_defline>
              <MSPepHit_protlength>260</MSPepHit_protlength>
              <MSPepHit_oid>352948</MSPepHit_oid>
            </MSPepHit>
            <MSPepHit>
              <MSPepHit_start>0</MSPepHit_start>
              <MSPepHit_stop>8</MSPepHit_stop>
              <MSPepHit_accession>CAA27012</MSPepHit_accession>
              <MSPepHit_defline>HSCAII NID:  - Homo sapiens</MSPepHit_defline>
              <MSPepHit_protlength>77</MSPepHit_protlength>
              <MSPepHit_oid>359165</MSPepHit_oid>
            </MSPepHit>
          </MSHits_pephits>
          <MSHits_mzhits>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>1</MSMZHit_number>
              <MSMZHit_mz>219080</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>2</MSMZHit_number>
              <MSMZHit_mz>356139</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>3</MSMZHit_number>
              <MSMZHit_mz>493198</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>4</MSMZHit_number>
              <MSMZHit_mz>679277</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>5</MSMZHit_number>
              <MSMZHit_mz>736298</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>6</MSMZHit_number>
              <MSMZHit_mz>899361</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>1</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>7</MSMZHit_number>
              <MSMZHit_mz>956382</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>0</MSMZHit_number>
              <MSMZHit_mz>147118</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>1</MSMZHit_number>
              <MSMZHit_mz>204139</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>2</MSMZHit_number>
              <MSMZHit_mz>367202</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>3</MSMZHit_number>
              <MSMZHit_mz>424223</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>4</MSMZHit_number>
              <MSMZHit_mz>610302</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>5</MSMZHit_number>
              <MSMZHit_mz>747361</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>6</MSMZHit_number>
              <MSMZHit_mz>884420</MSMZHit_mz>
            </MSMZHit>
            <MSMZHit>
              <MSMZHit_ion>
                <MSIonType>4</MSIonType>
              </MSMZHit_ion>
              <MSMZHit_charge>1</MSMZHit_charge>
              <MSMZHit_number>7</MSMZHit_number>
              <MSMZHit_mz>971452</MSMZHit_mz>
            </MSMZHit>
          </MSHits_mzhits>
          <MSHits_pepstring>MSHHWGYGK</MSHits_pepstring>
          <MSHits_mass>1101492</MSHits_mass>
          <MSHits_pepstart></MSHits_pepstart>
          <MSHits_pepstop>H</MSHits_pepstop>
          <MSHits_theomass>1101484</MSHits_theomass>
        </MSHits>
      </MSHitSet_hits>
      <MSHitSet_ids></MSHitSet_ids>
      <MSHitSet_settingid>0</MSHitSet_settingid>
    </MSHitSet>
  </MSResponse_hitsets>
  <MSResponse_scale>1000</MSResponse_scale>
  <MSResponse_dbversion>401298</MSResponse_dbversion>
  <MSResponse_bioseqs>
    <MSBioseqSet>
      <MSBioseq>
        <MSBioseq_oid>1602</MSBioseq_oid>
        <MSBioseq_seq>
          <Bioseq>
            <Bioseq_id>
              <Seq-id>
                <Seq-id_local>
                  <Object-id>
                    <Object-id_str>CRHU2</Object-id_str>
                  </Object-id>
                </Seq-id_local>
              </Seq-id>
            </Bioseq_id>
            <Bioseq_descr>
              <Seq-descr>
                <Seqdesc>
                  <Seqdesc_title>carbonate dehydratase (EC 4.2.1.1) II [validated] - human</Seqdesc_title>
                </Seqdesc>
                <Seqdesc>
                  <Seqdesc_user>
                    <User-object>
                      <User-object_type>
                        <Object-id>
                          <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                        </Object-id>
                      </User-object_type>
                      <User-object_data>
                        <User-field>
                          <User-field_label>
                            <Object-id>
                              <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                            </Object-id>
                          </User-field_label>
                          <User-field_num>1</User-field_num>
                          <User-field_data>
                            <User-field_data_oss>
                              <User-field_data_oss_E>30803080A0801A39636172626F6E6174652064656879647261746173652028454320342E322E312E3129204949205B76616C6964617465645D202D2068756D616E0000A1803080A080A1801A0543524855320000000000000000A280020100000000000000</User-field_data_oss_E>
                            </User-field_data_oss>
                          </User-field_data>
                        </User-field>
                      </User-object_data>
                    </User-object>
                  </Seqdesc_user>
                </Seqdesc>
              </Seq-descr>
            </Bioseq_descr>
            <Bioseq_inst>
              <Seq-inst>
                <Seq-inst_repr value="raw"/>
                <Seq-inst_mol value="aa"/>
                <Seq-inst_length>260</Seq-inst_length>
                <Seq-inst_seq-data>
                  <Seq-data>
                    <Seq-data_ncbistdaa>
                      <NCBIstdaa>0C110808140716070A080D070E050814080A04060E09010A0705100F110E13040904120812010A16040E110B0A0E0B11131116040F0112110B10090B0D0D070801060D1305060404110F040A01130B0A07070E0B04071216100B090F060806081407110B04070F071105081213040A0A0A160101050B080B1308140D120A16070406070A01130F0F0E04070B01130B0709060B0A130711010A0E070B0F0A131304130B0411090A120A070A11010406120D06040E10070B0B0E05110B04161412160E07110B12120E0E0B0B050313121409130B0A050E0911131111050F130B0A06100A0B0D060D070507050E05050B0C13040D14100E010F0E0B0A0D100F090A0111060A</NCBIstdaa>
                    </Seq-data_ncbistdaa>
                  </Seq-data>
                </Seq-inst_seq-data>
              </Seq-inst>
            </Bioseq_inst>
          </Bioseq>
        </MSBioseq_seq>
      </MSBioseq>
      <MSBioseq>
        <MSBioseq_oid>318026</MSBioseq_oid>
        <MSBioseq_seq>
          <Bioseq>
            <Bioseq_id>
              <Seq-id>
                <Seq-id_local>
                  <Object-id>
                    <Object-id_str>AAO85140</Object-id_str>
                  </Object-id>
                </Seq-id_local>
              </Seq-id>
            </Bioseq_id>
            <Bioseq_descr>
              <Seq-descr>
                <Seqdesc>
                  <Seqdesc_title>AY240020 NID:  - Bos taurus</Seqdesc_title>
                </Seqdesc>
                <Seqdesc>
                  <Seqdesc_user>
                    <User-object>
                      <User-object_type>
                        <Object-id>
                          <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                        </Object-id>
                      </User-object_type>
                      <User-object_data>
                        <User-field>
                          <User-field_label>
                            <Object-id>
                              <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                            </Object-id>
                          </User-field_label>
                          <User-field_num>1</User-field_num>
                          <User-field_data>
                            <User-field_data_oss>
                              <User-field_data_oss_E>30803080A0801A1B4159323430303230204E49443A20202D20426F73207461757275730000A1803080A080A1801A0841414F38353134300000000000000000A280020100000000000000</User-field_data_oss_E>
                            </User-field_data_oss>
                          </User-field_data>
                        </User-field>
                      </User-object_data>
                    </User-object>
                  </Seqdesc_user>
                </Seqdesc>
              </Seq-descr>
            </Bioseq_descr>
            <Bioseq_inst>
              <Seq-inst>
                <Seq-inst_repr value="raw"/>
                <Seq-inst_mol value="aa"/>
                <Seq-inst_length>260</Seq-inst_length>
                <Seq-inst_seq-data>
                  <Seq-data>
                    <Seq-data_ncbistdaa>
                      <NCBIstdaa>0C110808140716070A080D070E050814080A04060E09010D0705100F110E13040904120A0113130F040E010B0A0E0B010B1316070501121110100C130D0D070811060D1305160404110F040A01130B0A04070E0B12071216100B130F060806081407111104040F07110508121304100A0A160101050B080B1308140D120A16070406071201010F0F0E04070B0113130713060B0A130704010D0E010B0F0A130B04010B0411090A120A070A111204060E0D06040E07110B0B0E0D130B04161412160E07110B12120E0E0B0B051113121409130B0A050E09111311110F0F0C0B0A0610120B0D060D010507050E050B0B0C0B010D14100E010F0E0B0A0D100F131007060E0A</NCBIstdaa>
                    </Seq-data_ncbistdaa>
                  </Seq-data>
                </Seq-inst_seq-data>
              </Seq-inst>
            </Bioseq_inst>
          </Bioseq>
        </MSBioseq_seq>
      </MSBioseq>
      <MSBioseq>
        <MSBioseq_oid>352948</MSBioseq_oid>
        <MSBioseq_seq>
          <Bioseq>
            <Bioseq_id>
              <Seq-id>
                <Seq-id_local>
                  <Object-id>
                    <Object-id_str>AAH11949</Object-id_str>
                  </Object-id>
                </Seq-id_local>
              </Seq-id>
            </Bioseq_id>
            <Bioseq_descr>
              <Seq-descr>
                <Seqdesc>
                  <Seqdesc_title>BC011949 NID:  - Homo sapiens</Seqdesc_title>
                </Seqdesc>
                <Seqdesc>
                  <Seqdesc_user>
                    <User-object>
                      <User-object_type>
                        <Object-id>
                          <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                        </Object-id>
                      </User-object_type>
                      <User-object_data>
                        <User-field>
                          <User-field_label>
                            <Object-id>
                              <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                            </Object-id>
                          </User-field_label>
                          <User-field_num>1</User-field_num>
                          <User-field_data>
                            <User-field_data_oss>
                              <User-field_data_oss_E>30803080A0801A1D4243303131393439204E49443A20202D20486F6D6F2073617069656E730000A1803080A080A1801A0841414831313934390000000000000000A280020100000000000000</User-field_data_oss_E>
                            </User-field_data_oss>
                          </User-field_data>
                        </User-field>
                      </User-object_data>
                    </User-object>
                  </Seqdesc_user>
                </Seqdesc>
              </Seq-descr>
            </Bioseq_descr>
            <Bioseq_inst>
              <Seq-inst>
                <Seq-inst_repr value="raw"/>
                <Seq-inst_mol value="aa"/>
                <Seq-inst_length>260</Seq-inst_length>
                <Seq-inst_seq-data>
                  <Seq-data>
                    <Seq-data_ncbistdaa>
                      <NCBIstdaa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stdaa>
                    </Seq-data_ncbistdaa>
                  </Seq-data>
                </Seq-inst_seq-data>
              </Seq-inst>
            </Bioseq_inst>
          </Bioseq>
        </MSBioseq_seq>
      </MSBioseq>
      <MSBioseq>
        <MSBioseq_oid>359165</MSBioseq_oid>
        <MSBioseq_seq>
          <Bioseq>
            <Bioseq_id>
              <Seq-id>
                <Seq-id_local>
                  <Object-id>
                    <Object-id_str>CAA27012</Object-id_str>
                  </Object-id>
                </Seq-id_local>
              </Seq-id>
            </Bioseq_id>
            <Bioseq_descr>
              <Seq-descr>
                <Seqdesc>
                  <Seqdesc_title>HSCAII NID:  - Homo sapiens</Seqdesc_title>
                </Seqdesc>
                <Seqdesc>
                  <Seqdesc_user>
                    <User-object>
                      <User-object_type>
                        <Object-id>
                          <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                        </Object-id>
                      </User-object_type>
                      <User-object_data>
                        <User-field>
                          <User-field_label>
                            <Object-id>
                              <Object-id_str>ASN1_BlastDefLine</Object-id_str>
                            </Object-id>
                          </User-field_label>
                          <User-field_num>1</User-field_num>
                          <User-field_data>
                            <User-field_data_oss>
                              <User-field_data_oss_E>30803080A0801A1B485343414949204E49443A20202D20486F6D6F2073617069656E730000A1803080A080A1801A0843414132373031320000000000000000A280020100000000000000</User-field_data_oss_E>
                            </User-field_data_oss>
                          </User-field_data>
                        </User-field>
                      </User-object_data>
                    </User-object>
                  </Seqdesc_user>
                </Seqdesc>
              </Seq-descr>
            </Bioseq_descr>
            <Bioseq_inst>
              <Seq-inst>
                <Seq-inst_repr value="raw"/>
                <Seq-inst_mol value="aa"/>
                <Seq-inst_length>77</Seq-inst_length>
                <Seq-inst_seq-data>
                  <Seq-data>
                    <Seq-data_ncbistdaa>
                      <NCBIstdaa>0C110808140716070A080D070E050814080A04060E09010A0705100F110E13040904120812010A16040E110B0A0E0B11131116040F0112110B10090B0D0D070801060D1305060404110F040A01</NCBIstdaa>
                    </Seq-data_ncbistdaa>
                  </Seq-data>
                </Seq-inst_seq-data>
              </Seq-inst>
            </Bioseq_inst>
          </Bioseq>
        </MSBioseq_seq>
      </MSBioseq>
    </MSBioseqSet>
  </MSResponse_bioseqs>
</MSResponse>