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<?xml version="1.0" encoding="UTF-8"?>
<msms_pipeline_analysis date="2007-12-05T17:49:46" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://regis-web.systemsbiology.net/pepXML http://www.matrixscience.com/xmlns/schema/pepXML_v18/pepXML_v18.xsd" summary_xml=".xml">
<msms_run_summary base_name="PepXMLFile_test_201.tmp" raw_data_type="raw" raw_data=".mzXML" search_engine="X! Tandem (k-score)">
<sample_enzyme name="trypsin">
<specificity cut="KR" no_cut="P" sense="C"/>
</sample_enzyme>
<search_summary base_name="PepXMLFile_test_201.tmp" search_engine="X! Tandem (k-score)" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="" out_data="" search_id="1">
<search_database local_path="./current.fasta" type="AA"/>
<aminoacid_modification aminoacid="C" massdiff="57.021464" mass="160.0306489852" variable="Y" binary="N" description="Carbamidomethyl (C)"/>
<terminal_modification terminus="n" massdiff="-17.026549" mass="0" variable="Y" description="Gln->pyro-Glu (N-term Q)" protein_terminus=""/>
<terminal_modification terminus="n" massdiff="-18.010565" mass="0" variable="Y" description="Glu->pyro-Glu (N-term E)" protein_terminus=""/>
</search_summary>
<analysis_timestamp analysis="peptideprophet" time="2007-12-05T17:49:52" id="1"/>
<spectrum_query spectrum="1" start_scan="1" end_scan="1" precursor_neutral_mass="1612.8242994304" assumed_charge="3" index="1" retention_time_sec="1.3653" >
<search_result>
<search_hit hit_rank="1" peptide="ELNKEMAAEKAKAAAG" peptide_prev_aa="R" peptide_next_aa="E" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="1612.8242994304" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<modification_info modified_peptide="(Glu->pyro-Glu)ELNKEMAAEKAKAAAG" mod_nterm_mass="129.0425942233">
</modification_info>
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="8" all_ntt_prob="(8,8,8)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="2" start_scan="2" end_scan="2" precursor_neutral_mass="1273.7758132857" assumed_charge="2" index="2" retention_time_sec="1.719" >
<search_result>
<search_hit hit_rank="1" peptide="QLPGVNIKPVVK" peptide_prev_aa="R" peptide_next_aa="V" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="1273.7758132857" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<modification_info modified_peptide="(Gln->pyro-Glu)QLPGVNIKPVVK" mod_nterm_mass="128.0585782552">
</modification_info>
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="7.7" all_ntt_prob="(7.7,7.7,7.7)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="3" start_scan="3" end_scan="3" precursor_neutral_mass="1354.7285291262" assumed_charge="2" index="3" retention_time_sec="2.0436" >
<search_result>
<search_hit hit_rank="1" peptide="IFQAALYAAPYK" peptide_prev_aa="K" peptide_next_aa="S" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="1354.7285291262" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="4.9" all_ntt_prob="(4.9,4.9,4.9)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="4" start_scan="4" end_scan="4" precursor_neutral_mass="2285.138699104" assumed_charge="3" index="4" retention_time_sec="2.7843" >
<search_result>
<search_hit hit_rank="1" peptide="EISPDTTLLDLQNNDISELR" peptide_prev_aa="K" peptide_next_aa="K" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="2285.138699104" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="0.00091" all_ntt_prob="(0.00091,0.00091,0.00091)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="5" start_scan="5" end_scan="5" precursor_neutral_mass="2285.138699104" assumed_charge="2" index="5" retention_time_sec="3.085" >
<search_result>
<search_hit hit_rank="1" peptide="EISPDTTLLDLQNNDISELR" peptide_prev_aa="K" peptide_next_aa="K" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="2285.138699104" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="7.9e-05" all_ntt_prob="(7.9e-05,7.9e-05,7.9e-05)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="6" start_scan="6" end_scan="6" precursor_neutral_mass="2307.1212295002" assumed_charge="3" index="6" retention_time_sec="3.4018" >
<search_result>
<search_hit hit_rank="1" peptide="RSHTILNSSQSFAKGCVQCK" peptide_prev_aa="K" peptide_next_aa="H" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="2307.1212295002" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<modification_info modified_peptide="RSHTILNSSQSFAKGC(Carbamidomethyl)VQC(Carbamidomethyl)K">
<mod_aminoacid_mass position="16" mass="160.0306489852"/>
<mod_aminoacid_mass position="19" mass="160.0306489852"/>
</modification_info>
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="14" all_ntt_prob="(14,14,14)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="7" start_scan="7" end_scan="7" precursor_neutral_mass="2269.1954242316" assumed_charge="3" index="7" retention_time_sec="4.4573" >
<search_result>
<search_hit hit_rank="1" peptide="VSLPNYPAIPSDATLEVQSLR" peptide_prev_aa="K" peptide_next_aa="S" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="2269.1954242316" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="0.65" all_ntt_prob="(0.65,0.65,0.65)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="8" start_scan="8" end_scan="8" precursor_neutral_mass="1612.7593913176" assumed_charge="2" index="8" retention_time_sec="4.8288" >
<search_result>
<search_hit hit_rank="1" peptide="NALWHTGDTESQVR" peptide_prev_aa="R" peptide_next_aa="L" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="1612.7593913176" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="0.0046" all_ntt_prob="(0.0046,0.0046,0.0046)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
<spectrum_query spectrum="9" start_scan="9" end_scan="9" precursor_neutral_mass="1023.5349143287" assumed_charge="2" index="9" retention_time_sec="5.1785" >
<search_result>
<search_hit hit_rank="1" peptide="SSLKNYANK" peptide_prev_aa="R" peptide_next_aa="I" protein="Protein1" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="0" calc_neutral_pep_mass="1023.5349143287" massdiff="0.0" num_tol_term="0" num_missed_cleavages="0" is_rejected="0" protein_descr="Protein No. 1">
<analysis_result analysis="peptideprophet">
<peptideprophet_result probability="1.1" all_ntt_prob="(1.1,1.1,1.1)">
</peptideprophet_result>
</analysis_result>
</search_hit>
</search_result>
</spectrum_query>
</msms_run_summary>
</msms_pipeline_analysis>
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