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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
#include <OpenMS/VISUAL/VISUALIZER/ModificationVisualizer.h>
//QT
#include <QtGui/QTextEdit>
#include <QtGui/QComboBox>
#include <QtGui/QLineEdit>
#include <iostream>
#include <vector>
using namespace std;
namespace OpenMS
{
ModificationVisualizer::ModificationVisualizer(bool editable, QWidget * parent) :
BaseVisualizerGUI(editable, parent),
BaseVisualizer<Modification>()
{
addLabel_("Modify Modification information");
addSeparator_();
addLineEdit_(treatmenttype_, "Treatment type");
addTextEdit_(treatmentcomment_, "Comment");
addLineEdit_(modificationname_, "Reagent name");
addDoubleLineEdit_(modificationmass_, "Mass change");
addComboBox_(modificationspecificity_, "Specificity Type");
addLineEdit_(modificationAA_, "Affected Amino Acids");
finishAdding_();
}
void ModificationVisualizer::update_()
{
if (!isEditable())
{
fillComboBox_(modificationspecificity_, &temp_.NamesOfSpecificityType[temp_.getSpecificityType()], 1);
}
else
{
fillComboBox_(modificationspecificity_, temp_.NamesOfSpecificityType, Modification::SIZE_OF_SPECIFICITYTYPE);
modificationspecificity_->setCurrentIndex(temp_.getSpecificityType());
}
treatmenttype_->setText(temp_.getType().c_str());
treatmenttype_->setReadOnly(true);
treatmentcomment_->setText(temp_.getComment().c_str());
modificationname_->setText(temp_.getReagentName().c_str());
modificationmass_->setText(String(temp_.getMass()).c_str());
modificationAA_->setText(temp_.getAffectedAminoAcids().c_str());
}
void ModificationVisualizer::store()
{
try
{
ptr_->setComment(treatmentcomment_->toPlainText());
ptr_->setReagentName(modificationname_->text());
ptr_->setMass(modificationmass_->text().toFloat());
ptr_->setSpecificityType((Modification::SpecificityType)modificationspecificity_->currentIndex());
ptr_->setAffectedAminoAcids(modificationAA_->text());
temp_ = (*ptr_);
}
catch (exception & e)
{
std::cout << "Error while trying to store the new modification data. " << e.what() << endl;
}
}
void ModificationVisualizer::undo_()
{
update_();
}
}
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