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## --------------------------------------------------------------------------
## OpenMS -- Open-Source Mass Spectrometry
## --------------------------------------------------------------------------
## Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
## ETH Zurich, and Freie Universitaet Berlin 2002-2018.
##
## This software is released under a three-clause BSD license:
## * Redistributions of source code must retain the above copyright
## notice, this list of conditions and the following disclaimer.
## * Redistributions in binary form must reproduce the above copyright
## notice, this list of conditions and the following disclaimer in the
## documentation and/or other materials provided with the distribution.
## * Neither the name of any author or any participating institution
## may be used to endorse or promote products derived from this software
## without specific prior written permission.
## For a full list of authors, refer to the file AUTHORS.
## --------------------------------------------------------------------------
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
## IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
## ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
## INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
##
## --------------------------------------------------------------------------
## $Maintainer: Stephan Aiche $
## $Authors: Stephan Aiche, Andreas Bertsch $
## --------------------------------------------------------------------------
## bashrc for the OpenMS/TOPP command shell ##
# check if this is a TOPP-shell or if the user included this file
if [ -n "$IS_TOPP_SHELL" ]; then
## we need the systems profile for the bash
source /etc/profile
## also add user profile; if it exists
if [ -e ~/.profile ]; then
source ~/.profile
fi
fi
if [ -z "${OPENMS_TOPP_PATH}" ]; then
echo "ERROR: You need to set \${OPENMS_TOPP_PATH} to the folder where OpenMS was installed. E.g."
echo "export OPENMS_TOPP_PATH=/Applications/OpenMS-1.10.0/"
echo "source \${OPENMS_TOPP_PATH}/.TOPP_bash_profile"
else
## setting of the OpenMS data path to the share directory
export OPENMS_DATA_PATH=${OPENMS_TOPP_PATH}/share/OpenMS
## add TOPPView, TOPPAS, and INIFileEditor to PATH
export PATH=${OPENMS_TOPP_PATH}/TOPPView.app/Contents/MacOS/:${PATH}
export PATH=${OPENMS_TOPP_PATH}/INIFileEditor.app/Contents/MacOS/:${PATH}
export PATH=${OPENMS_TOPP_PATH}/TOPPAS.app/Contents/MacOS/:${PATH}
## also the search engines
for folder in ${OPENMS_DATA_PATH}/THIRDPARTY/*/ ; do
export PATH=$folder:$PATH
done
## and finally the bin folder
export PATH=${OPENMS_TOPP_PATH}/bin:${PATH}
fi
## EOF
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