File: control

package info (click to toggle)
openms 2.4.0-real-1
  • links: PTS, VCS
  • area: main
  • in suites: buster, sid
  • size: 646,136 kB
  • sloc: cpp: 392,260; xml: 215,373; python: 10,976; ansic: 3,325; php: 2,482; sh: 901; ruby: 399; makefile: 141; perl: 85
file content (211 lines) | stat: -rw-r--r-- 8,411 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
Source: openms
Section: science
Priority: optional
Maintainer: The Debichem Group <debichem-devel@lists.alioth.debian.org>
Uploaders: Filippo Rusconi <lopippo@debian.org>
Build-Depends: debhelper (>= 9.20151004),
               dpkg-dev (>= 1.16.1~),
               cmake (>= 3.0.2),
               libxerces-c-dev (>= 3.1.1),
               libeigen3-dev,
               libwildmagic-dev,
               libboost-dev (>= 1.54.0),
               libboost-iostreams-dev (>= 1.54.0),
               libboost-date-time-dev (>= 1.54.0),
               libboost-math-dev (>= 1.54.0),
               libsqlite3-dev,
               seqan-dev (>= 1.4.1),
               libsvm-dev (>= 3.12),
               libglpk-dev (>= 4.52.1),
               zlib1g-dev (>= 1.2.7),
               libbz2-dev (>= 1.0.6),
               cppcheck (>= 1.54),
               qtbase5-dev (>= 5.7.0),
							 libqt5opengl5-desktop-dev (>= 5.7.0),
               libqt5svg5-dev (>= 5.7.0),
               coinor-libcbc-dev (>= 2.8.12-1+b2),
               coinor-libcgl-dev (>= 0.58.9-1+b1),
               imagemagick,
               doxygen (>= 1.8.1.2),
               graphviz,
               texlive-extra-utils,
               texlive-latex-extra,
               texlive-latex-recommended,
               texlive-fonts-extra,
               texlive-font-utils,
               texlive-plain-generic,
               tex-gyre,
               ghostscript,
               texlive-fonts-recommended
Standards-Version: 4.2.1
Homepage: http://www.openms.de
Vcs-Browser: https://salsa.debian.org/debichem-team/openms
Vcs-Git: https://salsa.debian.org/debichem-team/openms.git


Package: libopenms2.4.0
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         openms-common (= ${source:Version})
Breaks: libopenms-1.11, libopenms2.0, libopenms2.3
Replaces: libopenms-1.11, libopenms2.0, libopenms2.3
Suggests: openms-doc
Section: libs
Description: library for LC/MS data management and analysis - runtime
 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.


Package: libopenms-dev
Architecture: any
Depends: ${misc:Depends},
         libopenms2.4.0 (= ${binary:Version})
Suggests: openms-doc
Section: libdevel
Description: library for LC/MS data management and analysis - dev files
 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package ships the library development files.


Package: topp
Architecture: any
Depends: ${shlibs:Depends},
         ${misc:Depends},
         libopenms2.4.0 (= ${binary:Version}),
         openms-common (= ${source:Version})
Suggests: openms-doc
Description: set of programs implementing The OpenMS Proteomic Pipeline
 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem. The applications make use of the libopenms
 library. Some examples of these applications are :
 .
   - TOPPView: A viewer for mass spectrometry data.
   - TOPPAS: An assistant for GUI-driven TOPP workflow design.
   - DTAExtractor: Extracts spectra of an MS run file to several
     files in DTA format.
   - FileConverter:  Converts between different MS file formats.
   - FileFilter: Extracts or manipulates portions of data from peak,
     feature or consensus feature files.
   - SpectraMerger: Merges spectra from an LC/MS map, either by
     precursor or by RT blocks.
   - BaselineFilter: Removes the baseline from profile spectra using a
     top-hat filter.
   - InternalCalibration: Applies an internal calibration.
   - PTModel: Trains a model for the prediction of proteotypic
     peptides from a training set.
   - RTPredict: Predicts retention times for peptides using a model
     trained by RTModel.
   - ExecutePipeline: Executes workflows created by TOPPAS.


Package: openms-common
Architecture: all
Depends: ${misc:Depends}
Suggests: libopenms2.4.0 (= ${binary:Version}),
          topp (= ${binary:Version})
Description: package for LC/MS data management and analysis - shared data
 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings data shared by the different binaries of the
 OpenMS software package (libOpenMS and libOpenMS_GUI libraries and
 the OpenMS Proteomic Pipeline binary tools).


Package: openms-doc
Architecture: all
Depends: ${misc:Depends},
         libjs-jquery
Suggests: libopenms2.4.0 (= ${binary:Version}),
          topp (= ${binary:Version})
Section: doc
Description: package for LC/MS data management and analysis - documentation
 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings full documentation for both the libopenms library
 package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic
 Pipeline (topp) package.


Package: openms
Architecture: all
Depends: ${misc:Depends},
         libopenms2.4.0 (>= ${source:Version}),
         topp (>= ${source:Version})
Suggests: openms-doc
Description: package for LC/MS data management and analysis
 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem.
 .
 This package is a metapackage that depends on both the libopenms
 library package (libOpenMS and libOpenMS_GUI) and the OpenMS
 Proteomic Pipeline (topp) package.