File: libopenms.3

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.TH "LIBOPENMS" "3" "October 2012"

.SH "NAME"
libopenms \- library for LC/MS data management and analysis

.SH "DESCRIPTION"
This manual page documents briefly the \fBlibopenms\fR package that
brings a library for LC/MS data management and analysis. OpenMS offers
an infrastructure for the development of mass spectrometry-related
software and powerful 2D and 3D visualization solutions. OpenMS offers
analyses for various quantitation protocols, including label-free
quantitation, SILAC, iTRAQ, SRM, SWATH… It provides build-in
algorithms for de-novo identification and database search, as well as
adapters to other state-of-the art tools like X!Tandem, Mascot, OMSSA…
OpenMS supports the Proteomics Standard Initiative (PSI) formats for
MS data and supports easy integration of tools into workflow engines
like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.

.SH "BIBLIOGRAPHICAL REFERENCE TO BE CITED"
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra
Zerck, Knut Reinert, and Oliver Kohlbacher (2008)  OpenMS – an
Open-Source Software Framework for Mass Spectrometry. \fI BMC
Bioinformatics\fP, 9:163. doi:10.1186/1471-2105-9-163.

.SH "SEE ALSO" 
.BR topp (1),
.BR openms-common (7),
.BR openms (7),
.BR openms\-doc (7).
.PP 
The program is documented fully in the \fITutorials\fP,
that are packaged in openms\-doc.

.SH "AUTHOR" 
This manual page was written by Filippo Rusconi
<\&lopippo@debian.org\&>. Permission is granted to copy,
distribute and/or modify this document under the terms of the GNU
General Public License, Version 3, published by the Free Software
Foundation.
.PP 
 On a Debian system the complete text of the GNU General Public
License version 3 can be found in the file
`\fI\%/usr/share/common-licenses/GPL\-3\fP'.