File: openms-common.7

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.TH "OPENMS-COMMON" "7" "November 2012"

.SH "NAME"
openms\-common \- library for LC/MS data management and analysis - common files

.SH "DESCRIPTION"
This manual page documents briefly the \fBopenms\-common\fR package
that ships shared data for the OpenMS software framework. OpenMS
offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization
solutions. OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It
provides build-in algorithms for de-novo identification and database
search, as well as adapters to other state-of-the art tools like
X!Tandem, Mascot, OMSSA… OpenMS supports the Proteomics Standard
Initiative (PSI) formats for MS data and supports easy integration of
tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS
via the TOPPtools concept and a unified parameter handling.

.SH "BIBLIOGRAPHICAL REFERENCE TO BE CITED"
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra
Zerck, Knut Reinert, and Oliver Kohlbacher (2008)  OpenMS – an
Open-Source Software Framework for Mass Spectrometry. \fI BMC
Bioinformatics\fP, 9:163. doi:10.1186/1471-2105-9-163.

.SH "SEE ALSO" 
.BR libopenms (3),
.BR topp (1),
.BR openms (7),
.BR openms\-doc (7).
.PP 
The program is documented fully in the \fITutorials\fP,
that are packaged in \fBopenms\-doc\fR.

.SH "AUTHOR" 
This manual page was written by Filippo Rusconi
<\&lopippo@debian.org\&>. Permission is granted to copy,
distribute and/or modify this document under the terms of the GNU
General Public License, Version 3, published by the Free Software
Foundation.
.PP 
 On a Debian system the complete text of the GNU General Public
License version 3 can be found in the file
`\fI\%/usr/share/common-licenses/GPL\-3\fP'.