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.TH "OPENMS-DOC" "7" "November 2012"
.SH "NAME"
openms\-doc \- library for LC/MS data management and analysis - documentation
.SH "DESCRIPTION"
This manual page documents briefly the \fBopenms\-doc\fR package that
brings a full set of documentation and tutorials to the OpenMS
software framework. OpenMS offers an infrastructure for the development
of mass spectrometry-related software and powerful 2D and 3D
visualization solutions. OpenMS offers analyses for various
quantitation protocols, including label-free quantitation, SILAC,
iTRAQ, SRM, SWATH… It provides build-in algorithms for de-novo
identification and database search, as well as adapters to other
state-of-the art tools like X!Tandem, Mascot, OMSSA… OpenMS supports
the Proteomics Standard Initiative (PSI) formats for MS data and
supports easy integration of tools into workflow engines like Knime,
Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified
parameter handling.
.SH "BIBLIOGRAPHICAL REFERENCE TO BE CITED"
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra
Zerck, Knut Reinert, and Oliver Kohlbacher (2008) OpenMS – an
Open-Source Software Framework for Mass Spectrometry. \fI BMC
Bioinformatics\fP, 9:163. doi:10.1186/1471-2105-9-163.
.SH "SEE ALSO"
.BR libopenms (3),
.BR topp (1),
.BR openms-common (7),
.BR openms (7),
.PP
.SH "AUTHOR"
This manual page was written by Filippo Rusconi
<\&lopippo@debian.org\&>. Permission is granted to copy,
distribute and/or modify this document under the terms of the GNU
General Public License, Version 3, published by the Free Software
Foundation.
.PP
On a Debian system the complete text of the GNU General Public
License version 3 can be found in the file
`\fI\%/usr/share/common-licenses/GPL\-3\fP'.
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