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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2018.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: $
// $Authors: Marc Sturm, Chris Bielow $
// --------------------------------------------------------------------------
/**
@page TOPP_concepts TOPP and %OpenMS
TOPP, The %OpenMS Proteomics Pipeline provides
a set of computational tools which can be easily combined into analysis pipelines even by non-experts and then be used
in proteomics workflows. These applications range from useful utilities file format conversion, peak picking) over wrapper
applications for known applications (e.g. Mascot) to completely new algorithmic techniques for data reduction and data
analysis. TOPP is based on the %OpenMS library and as more functionality
is added to new %OpenMS releases, TOPP will naturally contain new or updated tools.
In addition to offering a toolbox, TOPP contains TOPPView - the central graphical user interface - which allows the user to view,
inspect and manipulate proteomics data. TOPPView reads standard formats and allows the user not only to view the data, but also
to interactively call TOPP tools and display the results. As such it is a powerful tool for interactive data manipulation.
In this tutorial we will now in detail explain the capabilities of TOPPView and the TOPP tools using real data sets and
standard analysis tasks.
*/
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