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|
#!/bin/bash
# --------------------------------------------------------------------------
# OpenMS -- Open-Source Mass Spectrometry
# --------------------------------------------------------------------------
# Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
# ETH Zurich, and Freie Universitaet Berlin 2002-2020.
#
# This software is released under a three-clause BSD license:
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
# * Neither the name of any author or any participating institution
# may be used to endorse or promote products derived from this software
# without specific prior written permission.
# For a full list of authors, refer to the file AUTHORS.
# --------------------------------------------------------------------------
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
# INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# --------------------------------------------------------------------------
# $Maintainer: Julianus Pfeuffer$
# $Authors: Marc Sturm, Julianus Pfeuffer $
# --------------------------------------------------------------------------
# Takes source and contrib (freshly checked out from given branch or by specifying git folders),
# as well as a prebuilt documentation (should include tutorials), copies it
# to one folder and
while [[ $# > 1 ]]
do
key="$1"
case $key in
-s|--source)
SOURCEPATH="$2"
shift # past argument
;;
-c|--contrib)
CONTRIBPATH="$2"
shift # past argument
;;
-d|--docs)
DOCPATH="$2"
shift # past argument
;;
-b|--branch)
BRANCH="$2"
shift # past argument
;;
-r|--releaseversion)
RELVERSION="$2"
shift # past argument
;;
*)
# unknown option
;;
esac
shift # past argument or value
done
if [[ -z $BRANCH ]]; then
# branch defaults to master
BRANCH=master
fi
if [[ -z $CONTRIBPATH ]]; then
# Following line: to work on LNX and OSX
mycontribtmpdir=`mktemp -d 2>/dev/null || mktemp -d -t 'mycontribtmpdir'`
echo "Cloning contrib master to $mycontribtmpdir/contrib"
# needs git
git clone https://github.com/OpenMS/contrib/ $mycontribtmpdir/contrib || {
echo "Can not clone contrib to $mycontribtmpdir/contrib. Specify an already cloned contrib path via -c or make sure the folder is empty. Also check internet connection";
exit ${LINENO}
} >&2
CONTRIBPATH="$mycontribtmpdir/contrib"
fi
# If source not given, clone here
if [[ -z $SOURCEPATH ]]; then
# Following line: to work on LNX and OSX
mysourcetmpdir=`mktemp -d 2>/dev/null || mktemp -d -t 'mysourcetmpdir'`
echo "Cloning OpenMS sources of branch $BRANCH to $mysourcetmpdir/OpenMS-$RELVERSION"
# needs git
git clone https://github.com/OpenMS/OpenMS/ $mysourcetmpdir/OpenMS-$RELVERSION || {
echo "Can not clone sources to $mysourcetmpdir/OpenMS-$RELVERSION. Specify an already cloned OpenMS source path via -s or make sure the folder is empty. Also check internet connection";
exit ${LINENO}
} >&2
SOURCEPATH="$mysourcetmpdir/OpenMS-$RELVERSION"
fi
if [[ -z $DOCPATH ]]; then
echo "Path to documentation not specified. Please build the documentation with tutorials and specify path with -d";
exit ${LINENO}
fi
## Release version can be empty. Only affects name of the tarball
echo Used the following variables:
echo SOURCE = "${SOURCEPATH}"
echo CONTRIB = "${CONTRIBPATH}"
echo DOCU = "${DOCPATH}"
echo BRANCH = "${BRANCH}"
echo RELVER = "${RELVERSION}"
# copy documentation
echo "####################################################"
echo "copying documentation to release"
cp $DOCPATH/OpenMS_tutorial.pdf $SOURCEPATH/doc/
cp $DOCPATH/TOPP_tutorial.pdf $SOURCEPATH/doc/
cp -r $DOCPATH/html $SOURCEPATH/doc/
# move contrib
echo "####################################################"
echo "moving contrib into sources"
cp -r $CONTRIBPATH $SOURCEPATH
# create archive
echo "####################################################"
echo "creating archive"
TARNAME="OpenMS-$RELVERSION"
FILE="${TARNAME}-sources.tar.gz"
echo "creating archive $PWD/${FILE}"
tar zcf ${FILE} -C ${SOURCEPATH} ..
|
