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openms (2.6.0+cleaned1-3) unstable; urgency=medium
* Team upload.
* Include code copy of header files of seqan-dev (limited to those header
files that are needed to build the package)
Closes: #982567
* Document code copy of seqan in debian/README.source
* Add debian/salsa-ci.yml
-- Andreas Tille <tille@debian.org> Tue, 02 Mar 2021 08:20:17 +0100
openms (2.6.0+cleaned1-2) unstable; urgency=low
* Implement the patch by Logan Rosen <logan@ubuntu.com> to fix the GLPK
version check that doesn't account for major version, fixing FTBFS against
GLPK 5. Thanks, Logan! Closes: #978194. Patch suggested upstream.
-- Filippo Rusconi <lopippo@debian.org> Mon, 04 Jan 2021 20:12:34 +0100
openms (2.6.0+cleaned1-1) unstable; urgency=low
* New upstream version.
* d/copyright: whole project revision, many files added.
* Fix bug (Closes: #975588), required specifying libboost packages with
version: libboost1.74-dev, libboost-iostreams1.74-dev,
libboost-date-time1.74-dev, libboost-math1.74-dev.
-- Filippo Rusconi <lopippo@debian.org> Tue, 15 Dec 2020 14:29:00 +0100
openms (2.5.0+cleaned1-5) unstable; urgency=low
* Fix the bug on mipsel (Closes: #964315). Thanks to Adrian Bunk
<bunk@debian.org> for the fix.
-- Filippo Rusconi <lopippo@debian.org> Wed, 08 Jul 2020 00:39:47 +0200
openms (2.5.0+cleaned1-4) unstable; urgency=low
* Fix the stable->sid upgrade problem (Breaks+Replaces bug ; Closes:#962832 ;
thanks to Andreas Beckmann <anbe@debian.org>) for reporting the
piuparts-detected failure.
-- Filippo Rusconi <lopippo@debian.org> Mon, 15 Jun 2020 09:57:32 +0200
openms (2.5.0+cleaned1-3) unstable; urgency=low
* Cleanup the Replaces/Conflics field to simplify to last
reasonable version: libopenms2.4.0-real-1.
* Since we replace the old version, lets close the bug that was
kindly reported by Paolo Greppi <paolo.greppi@libpf.com> (Closes:
#943450).
-- Filippo Rusconi <lopippo@debian.org> Fri, 12 Jun 2020 14:59:53 +0200
openms (2.5.0+cleaned1-2) unstable; urgency=low
* Fix location of the header files.
* Some other improvements to the packaging.
-- Filippo Rusconi <lopippo@debian.org> Tue, 02 Jun 2020 15:28:50 +0200
openms (2.5.0+cleaned1-1) unstable; urgency=low
* New upstream version.
-- Filippo Rusconi <lopippo@debian.org> Tue, 12 May 2020 14:31:14 +0200
openms (2.4.0-real-2) UNRELEASED; urgency=low
* debian/binaries-extract-one-line-man-desc.sh: Fix a non-reproducible build failure.
* debian/control: Standards-Version: 4.3.0
-- Filippo Rusconi <lopippo@debian.org> Fri, 08 Mar 2019 10:23:37 +0100
openms (2.4.0-real-1) unstable; urgency=low
* Really released 2.4.0 version with Qt5 port merged;
* d/control: update website url to http://www.openms.de (thanks to Adrian Bunk
<bunk@debian.org>; Closes: #906561);
* d/copyright: update website url and copyright years.
add Design Science License (Thanks to Dmitry Smirnov
<onlyjob@debian.org>, Closes: #822412);
* d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev
(>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks
to Adrian Bunk <bunk@debian.org>, Closes: #906666);
* Use secure copyright file specification URI.
* Trim trailing whitespace.
Jelmer Vernooij <jelmer@debian.org> Mon, 15 Oct 2018 06:59:37 +0000
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
-- Filippo Rusconi <lopippo@debian.org> Sat, 17 Nov 2018 17:24:48 +0100
openms (2.4.0-1) unstable; urgency=low
* New upstream version (release branch with Qt5 port merged).
-- Filippo Rusconi <lopippo@debian.org> Thu, 16 Aug 2018 13:45:17 +0200
openms (2.3-20180419-git-a0b7f650-1) experimental; urgency=low
* New upstream version (development branch with Qt5 port merged).
-- Filippo Rusconi <lopippo@debian.org> Thu, 19 Apr 2018 11:02:39 +0200
openms (20170907-1) UNRELEASED; urgency=medium
* New upstream version ported to Qt5.
-- Filippo Rusconi <lopippo@debian.org> Wed, 06 Sep 2017 10:47:49 +0200
openms (2.0.0-4) unstable; urgency=medium
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
* debian/rules: fix the OPENMS_DATA_PATH value so that it points to
/us/share/openms-common and not /usr/share/openms-common/OpenMS.
* debian/rules: Put dh_clean at the end of the clean target.
* switched doc_minimal doc_class_only targets around in the make call
because the doxygen-based documentation for the classes did not get
generated fully.
* Remove the git protocol URL for the repos and switch to secure http for
the other URL.
* debian/control: Standards-Version: 3.9.7. No changes required.
* debian/rules: Reinstate DEB_BUILD_MAINT_OPTIONS along with the hardening
flag +all..
* debian/rules: Make sure libSuperHirn and libOpenMS_GUI libraries are
processed fine with respect to the symbols control file.
-- Filippo Rusconi <lopippo@debian.org> Wed, 30 Mar 2016 12:06:31 +0200
openms (2.0.0-3) unstable; urgency=medium
* Ship the dynamically generated cmake files to the -dev package.
* Improve the build system patch to state that we prefer libboost shared
objects.
* debian/rules: Packaging (debian/*.install files) now uses the material
that has been installed with make install DESTDIR=debian/build after
cmake call with -DCMAKE_INSTALL_PREFIX=/usr.
-- Filippo Rusconi <lopippo@debian.org> Mon, 18 Jan 2016 21:35:18 +0100
openms (2.0.0-2) unstable; urgency=medium
* Ship the code examples to the openms-doc package. These examples are
partially described in the documentation (html format) but having the
whole code files is more interesting.
* d/control: add "Replaces: libopenms-1.11" to fix upgrade problem
(Closes: #810356), thanks to Andreas Beckmann <anbe@debian.org> for
the report.
* Bump-up debian/compat to 9.
* debian/watch: use sf redirector.
-- Filippo Rusconi <lopippo@debian.org> Thu, 14 Jan 2016 12:36:43 +0100
openms (2.0.0-1) unstable; urgency=medium
* New upstream version (Closes: #790624 ; Closes: #804496).
-- Filippo Rusconi <lopippo@debian.org> Mon, 17 Aug 2015 17:17:37 +0200
openms (1.11.1-5) unstable; urgency=medium
* mv upstream upstream/metadata
-- Filippo Rusconi <lopippo@debian.org> Mon, 18 Aug 2014 11:48:52 +0200
openms (1.11.1-4) unstable; urgency=low
* Apply a patch suggested by Stephan Aiche <Stephan.Aiche@fu-berlin.de>
to fix the failure when buiding the manuals using the LaTeX code
created by Doxygen.
* Create debian/missing-sources/jquery-1.7.1.js with the source file
from http://code.jquery.com/jquery-1.7.1.js (lintian warning).
* Add #DEBHELPER# to postinst (lintian warning).
* Fix syntax error in the copyright file (lintian warning).
* Remove ${shlibs:Depends} from Depends: of -common and -doc.
* debian/copyright: fix syntax of the copyright field of the Files: *
section.
-- Filippo Rusconi <lopippo@debian.org> Mon, 30 Jun 2014 09:46:50 +0200
openms (1.11.1-3) unstable; urgency=low
* remove version number from libbost development package names;
* ensure that AUTHORS is correctly shipped in all packages.
-- Filippo Rusconi <lopippo@debian.org> Fri, 20 Dec 2013 11:30:16 +0100
openms (1.11.1-2) unstable; urgency=low
* New upstream release.
* debian/control: canonicalize the Vcs-Git and Vcs-Browser fields;
* debian/control: remove the Conflicts declaration for -dev, which is not
required at all;
* add *.desktop files to reference OpenMS in the non-Debian menus
(thanks to Olivier Langella). Note that preexisting topp.menu shows
the menus in the Debian menu if menu-xdg is installed. Sent enquiry
about having these two files included in upstream.
* Standards-Version: 3.9.4;
-- Filippo Rusconi <lopippo@debian.org> Thu, 19 Dec 2013 09:41:22 +0100
openms (1.11.0-1) UNRELEASED; urgency=low
* New upstream release.
-- Filippo Rusconi <lopippo@debian.org> Wed, 10 Jul 2013 22:54:41 +0200
openms (1.10.0-1) UNRELEASED; urgency=low
* New upstream release.
-- Filippo Rusconi <lopippo@debian.org> Wed, 10 Jul 2013 22:54:41 +0200
openms (1.9.0-4) unstable; urgency=low
* debian/rules: reinstate the .NOTPARALLEL: directive to preclude
parallelization of the build, as the errors are too complicated to
follow in the build log. Also inhibit the
parallel=%,$(DEB_BUILD_OPTIONS) and NUMJOBS options processing, as
suggested by Aaron M. Ucko" <ucko@debian.org> (Closes: #702606).
-- Filippo Rusconi <lopippo@debian.org> Fri, 29 Mar 2013 13:05:15 +0100
openms (1.9.0-3) unstable; urgency=low
* debian/rules: fix problem with DEB_BUILD_GNU_TYPE not holding proper
values on some platforms, like i386, by adding
DEB_HOST_MULTIARCH. Thanks to "Aaron M. Ucko" <ucko@debian.org>
(Closes: #702512);
* Fix the watch file, thanks to Nick Black <nick.black@sprezzatech.com>
(Closes: #702518);
* New code in patch ensures that there is no creation of symlinks by
CMake after building of the libraries, since the symlinks are created
anyways in debian/.
-- Filippo Rusconi <lopippo@debian.org> Thu, 07 Mar 2013 18:38:56 +0100
openms (1.9.0-2) unstable; urgency=low
* Transition from experimental to unstable. Tests were positive.
* Fix non-inclusion of generated config include files in the
/usr/include/OpenMS directory
-- Filippo Rusconi <lopippo@debian.org> Wed, 06 Mar 2013 14:11:11 +0100
openms (1.9.0-1) experimental; urgency=low
* 1.9.0 First Debian package release (Closes: #691129).
-- Filippo Rusconi <lopippo@debian.org> Mon, 12 Nov 2012 15:58:12 +0100
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