1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
''' Unit tests for the Naccess wrapper
'''
import unittest
import sys
import shutil
import tempfile
from ost.bindings import naccess
from ost import io, settings
class TestNaccessBindings(unittest.TestCase):
def testTempDirWithDot(self):
# naccess itself has problems with '.' in the path. So we need to test
# that it works when data is used which has a correpsonding path.
na_tmp_dir = tempfile.mkdtemp(prefix="ih.")
def cleanup():
shutil.rmtree(na_tmp_dir)
self.addCleanup(cleanup)
ost_ent = io.LoadPDB('testfiles/testprotein.pdb')
excp_raised = False
try:
sasa = naccess.CalculateSurfaceArea(ost_ent,
scratch_dir=na_tmp_dir)
except:
excp_raised = True
raise
self.assertEqual(excp_raised, False, msg="Naccess raised an "+
"exception on a path containing a '.'. This is not "+
"supposed to happen.")
if __name__ == "__main__":
try:
settings.Locate("naccess")
except:
print("Could not find NACCESS, could not test binding...")
sys.exit(0)
from ost import testutils
testutils.RunTests()
|
