1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
|
Query Test
Match_columns 141
No_of_seqs 253 out of 255
Neff 9.40349
Searched_HMMs 5
Date Thu Apr 16 22:48:40 2020
Command /scicore/soft/apps/HH-suite/3.2.0-foss-2018b-Boost-1.68.0-Python-3.6.6/bin/hhblits -cpu 1 -n 1 -e 0.001 -Z 10000 -B 10000 -i /scicore/home/schwede/studga00/prog/ost_dev/modules/bindings/tests/testfiles/testali.a3m -o /scratch/tmpc2d8_x_x/testali_cpu1_n1.hhr -d /scicore/home/schwede/studga00/prog/ost_dev/modules/bindings/tests/testfiles/hhblitsdb/unittestdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 Test 100.0 4.3E-39 9E-41 199.3 18.3 141 1-141 1-141 (141)
2 Test 1.6 3.2 0.068 12.3 1.6 10 9-18 120-129 (141)
3 fff405e08062fd0869ae7b125b27b3 0.2 24 0.51 11.5 6.8 18 29-46 320-337 (848)
4 fffff7f3b4369f17341d1230f9b841 0.0 28 0.6 8.1 -1.9 13 115-127 133-145 (195)
No 1
>Test
Probab=100.00 E-value=4.3e-39 Score=199.35 Aligned_cols=141 Identities=100% Similarity=1.413 Sum_probs=132.9 Template_Neff=9.300
Q ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhccCCHHHHH
Q Test 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 80 (141)
Q Consensus 1 ~lt~~~~~~i~~sW~~v~~~~~~~g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~h~~~v~~~l~~~i~~ld~~~~~l 80 (141)
+||++|+++|++||+.+.++.+++|..||.+||+.+|+++.+|+.++.+.+||.++.|+.+|+++|+.+|+++|++...+
T Consensus 1 ~lt~~~~~~i~~sW~~v~~~~~~~g~~~~~~lf~~~P~~~~~F~~~~~~~~~~~~~~h~~~v~~~l~~~i~~ld~~~~~l 80 (141)
T Test 1 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 80 (141)
T ss_pred CCCHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 68999999999999999888899999999999999999999999873335778999999999999999999999998899
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q Test 81 SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
Q Consensus 81 ~~l~~~H~~~~gv~~~~f~~~~~~l~~~l~~~lg~~~~~~~~~AW~~~~~~i~~~m~~~~~ 141 (141)
..+|+.|.+++||+|+||+.++++|+++|++.+|++||+++++||++++++|++.|.++|+
T Consensus 81 ~~l~~~H~~~~gv~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~AW~~~~~~i~~~m~~~y~ 141 (141)
T Test 81 SALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR 141 (141)
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999735999999999999999999999999999999999999999999999999985
No 2
>Test
Probab=1.57 E-value=3.2 Score=12.26 Aligned_cols=10 Identities=30% Similarity=0.185 Sum_probs=6.4 Template_Neff=9.300
Q ss_pred HHHHHHHHHh
Q Test 9 NVKAAWGKVG 18 (141)
Q Consensus 9 ~i~~sW~~v~ 18 (141)
.+..+|..+.
T Consensus 120 ~~~~AW~~~~ 129 (141)
T Test 120 AVHASLDKFL 129 (141)
T ss_pred HHHHHHHHHH
Confidence 3566777764
No 3
>fff405e08062fd0869ae7b125b27b353
Probab=0.20 E-value=24 Score=11.45 Aligned_cols=18 Identities=6% Similarity=0.048 Sum_probs=12.1 Template_Neff=9.500
Q ss_pred HHHHHhhCccccccCCCC
Q Test 29 LERMFLSFPTTKTYFPHF 46 (141)
Q Consensus 29 f~~lf~~~P~~~~~F~~~ 46 (141)
|.++++.+|.+...|..+
T Consensus 320 ~~~~~~~~~~l~~rf~~i 337 (848)
T fff405e08062fd 320 YRKHIEKDAALERRFQQV 337 (848)
T ss_pred HHHHHhcChhHhhcCeee
Confidence 456666777777777654
No 4
>fffff7f3b4369f17341d1230f9b841ec
Probab=0.04 E-value=28 Score=8.14 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.6 Template_Neff=7.400
Q ss_pred cCCCHHHHHHHHH
Q Test 115 AEFTPAVHASLDK 127 (141)
Q Consensus 115 ~~~~~~~~~AW~~ 127 (141)
.+|.+.....|..
T Consensus 133 ~~F~p~~~~~~~~ 145 (195)
T fffff7f3b4369f 133 TDFDSQTNVSQSK 145 (195)
T ss_pred ecCCCCCceeeec
Confidence 4566665566643
|
