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//------------------------------------------------------------------------------
// This file is part of the OpenStructure project <www.openstructure.org>
//
// Copyright (C) 2008-2020 by the OpenStructure authors
//
// This library is free software; you can redistribute it and/or modify it under
// the terms of the GNU Lesser General Public License as published by the Free
// Software Foundation; either version 3.0 of the License, or (at your option)
// any later version.
// This library is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
// details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with this library; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
//------------------------------------------------------------------------------
/*
Author: Marco Biasini
*/
#define BOOST_TEST_DYN_LINK
#include <boost/test/unit_test.hpp>
#include <ost/seq/invalid_sequence.hh>
#include <ost/io/seq/pir_io_handler.hh>
#include <ost/io/seq/load.hh>
#include <ost/io/io_exception.hh>
using namespace ost;
using namespace ost::io;
BOOST_AUTO_TEST_SUITE( io );
BOOST_AUTO_TEST_CASE(pir_filetypes)
{
BOOST_CHECK(PirIOHandler::ProvidesImport("","pir"));
BOOST_CHECK(PirIOHandler::ProvidesImport("alignment.pir"));
}
BOOST_AUTO_TEST_CASE(pir_simple)
{
seq::SequenceHandle s=LoadSequence("testfiles/pir/simple.pir");
BOOST_CHECK_EQUAL(s.GetName(), "name");
BOOST_CHECK_EQUAL(s.GetString(), "ABCDEFGHIJKLMNOP");
}
BOOST_AUTO_TEST_CASE(pir_seq_types)
{
seq::SequenceList s=LoadSequenceList("testfiles/pir/seq-types.pir");
}
BOOST_AUTO_TEST_CASE(pir_errors)
{
BOOST_CHECK_THROW(SequenceFromString(">", "pir"), IOException);
BOOST_CHECK_THROW(SequenceFromString(">P1", "pir"), IOException);
BOOST_CHECK_THROW(SequenceFromString(">P1;", "pir"), IOException);
BOOST_CHECK_THROW(SequenceFromString(">P1;name\n", "pir"), IOException);
BOOST_CHECK_THROW(SequenceFromString(">P1;name\ndescription\n", "pir"),
IOException);
}
BOOST_AUTO_TEST_CASE(pir_no_star)
{
BOOST_CHECK_THROW(LoadSequence("testfiles/pir/no-star.pir"),
seq::InvalidSequence);
}
BOOST_AUTO_TEST_SUITE_END();
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