File: sequence_profile_formats.rst

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Supported Sequence Profile File Formats
================================================================================

HHblits output
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

*Recognized File Extensions*
  .hhm, .hhm.gz
  
*Format Name*
  hhm
  

PSI-BLAST output
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

ASCII Table (PSSM) output of PSI-BLAST as generated with blastpgp and flag -Q.

*Recognized File Extensions*
  .pssm, .pssm.gz
  
*Format Name*
  pssm