File: compound-view.sdf

package info (click to toggle)
openstructure 2.11.1-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 206,256 kB
  • sloc: cpp: 188,571; python: 36,686; ansic: 34,298; fortran: 3,275; sh: 312; xml: 146; makefile: 29
file content (440 lines) | stat: -rw-r--r-- 8,914 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
Test Ligand


 21 23  0  0  0  0            999 V2000
   33.9561    6.2475   23.4088 C   0  0  0  0  0  0
   32.6324    6.6232   23.1367 C   0  0  0  0  0  0
   34.5295    6.5843   24.6557 C   0  0  0  0  0  0
   31.8762    7.3329   24.0856 C   0  0  0  0  0  0
   33.7671    7.2733   25.6188 C   0  0  0  0  0  0
   32.4286    7.6460   25.3459 C   0  0  0  0  0  0
   31.5951    8.3119   26.3710 C   0  0  0  0  0  0
   31.3314    7.9140   27.6484 C   0  0  0  0  0  0
   31.8735    6.7525   28.4344 C   0  0  0  0  0  0
   30.4351    8.7885   28.2094 N   0  0  0  0  0  0
   31.7811    6.9129   29.7679 N   0  0  0  0  0  0
   30.1110    9.7809   27.3482 N   0  0  0  0  0  0
   32.3829    6.0325   30.7674 C   0  0  0  0  0  0
   30.7767    9.4820   26.2306 C   0  0  0  0  0  0
   31.3859    4.9676   31.2295 C   0  0  0  0  0  0
   30.7144   10.3135   25.0185 C   0  0  0  0  0  0
   31.9150   10.8059   24.4681 C   0  0  0  0  0  0
   31.8995   11.6150   23.3143 C   0  0  0  0  0  0
   30.6694   11.9024   22.6787 C   0  0  0  0  0  0
   29.4673   11.4261   23.2329 C   0  0  0  0  0  0
   29.4821   10.6385   24.4075 C   0  0  0  0  0  0
  1  2  1  0  0  0
  1  3  2  0  0  0
  2  4  2  0  0  0
  3  5  1  0  0  0
  4  6  1  0  0  0
  5  6  2  0  0  0
  6  7  1  0  0  0
  7  8  2  0  0  0
  7 14  1  0  0  0
  8  9  1  0  0  0
  8 10  1  0  0  0
  9 11  1  0  0  0
 10 12  1  0  0  0
 11 13  1  0  0  0
 12 14  2  0  0  0
 13 15  1  0  0  0
 14 16  1  0  0  0
 16 17  1  0  0  0
 16 21  2  0  0  0
 17 18  2  0  0  0
 18 19  1  0  0  0
 19 20  2  0  0  0
 20 21  1  0  0  0
M  END
> <i_i_glide_confnum>
2

> <i_i_glide_lignum>
1

> <i_i_glide_posenum>
352

> <r_i_docking_score>
-8.84426

> <r_i_glide_ecoul>
-16.1644

> <r_i_glide_einternal>
6.78671

> <r_i_glide_emodel>
-96.9661

> <r_i_glide_energy>
-62.2146

> <r_i_glide_erotb>
0.517993

> <r_i_glide_esite>
-0.0291388

> <r_i_glide_evdw>
-46.0502

> <r_i_glide_gscore>
-8.84426

> <r_i_glide_hbond>
-0.960751

> <r_i_glide_ligand_efficiency>
-0.327565

> <r_i_glide_ligand_efficiency_ln>
-2.0588

> <r_i_glide_ligand_efficiency_sa>
-0.982695

> <r_i_glide_lipo>
-2.84534

> <r_i_glide_metal>
-0

> <r_i_glide_rewards>
-0.799851

> <r_i_glide_rmsd>
0.6819

$$$$
Test Ligand


 21 23  0  0  0  0            999 V2000
   34.1450    6.3862   23.4047 C   0  0  0  0  0  0
   34.6745    6.7394   24.6654 C   0  0  0  0  0  0
   32.7998    6.7274   23.0916 C   0  0  0  0  0  0
   33.8742    7.4015   25.6120 C   0  0  0  0  0  0
   32.0035    7.3913   24.0448 C   0  0  0  0  0  0
   32.5275    7.7230   25.3191 C   0  0  0  0  0  0
   31.6607    8.3431   26.3377 C   0  0  0  0  0  0
   31.4133    7.9370   27.6169 C   0  0  0  0  0  0
   31.9782    6.7689   28.3776 C   0  0  0  0  0  0
   30.5206    8.8053   28.2099 N   0  0  0  0  0  0
   32.0029    6.9625   29.7121 N   0  0  0  0  0  0
   30.1677    9.8050   27.3570 N   0  0  0  0  0  0
   32.5238    6.0208   30.6934 C   0  0  0  0  0  0
   30.8244    9.5086   26.2225 C   0  0  0  0  0  0
   31.3863    5.1079   31.1861 C   0  0  0  0  0  0
   30.7465   10.3438   25.0101 C   0  0  0  0  0  0
   31.9316   10.8558   24.4417 C   0  0  0  0  0  0
   31.8920   11.6586   23.2829 C   0  0  0  0  0  0
   30.6518   11.9231   22.6600 C   0  0  0  0  0  0
   29.4612   11.4393   23.2345 C   0  0  0  0  0  0
   29.4978   10.6576   24.4073 C   0  0  0  0  0  0
  1  2  1  0  0  0
  1  3  2  0  0  0
  2  4  2  0  0  0
  3  5  1  0  0  0
  4  6  1  0  0  0
  5  6  2  0  0  0
  6  7  1  0  0  0
  7  8  2  0  0  0
  7 14  1  0  0  0
  8  9  1  0  0  0
  8 10  1  0  0  0
  9 11  1  0  0  0
 10 12  1  0  0  0
 11 13  1  0  0  0
 12 14  2  0  0  0
 13 15  1  0  0  0
 14 16  1  0  0  0
 16 17  1  0  0  0
 16 21  2  0  0  0
 17 18  2  0  0  0
 18 19  1  0  0  0
 19 20  2  0  0  0
 20 21  1  0  0  0
M  END
> <i_i_glide_confnum>
14

> <i_i_glide_lignum>
1

> <i_i_glide_posenum>
302

> <r_i_docking_score>
-8.79327

> <r_i_glide_ecoul>
-16.9687

> <r_i_glide_einternal>
5.76514

> <r_i_glide_emodel>
-98.4298

> <r_i_glide_energy>
-63.3874

> <r_i_glide_erotb>
0.517993

> <r_i_glide_esite>
-0.00975737

> <r_i_glide_evdw>
-46.4187

> <r_i_glide_gscore>
-8.79327

> <r_i_glide_hbond>
-0.966475

> <r_i_glide_ligand_efficiency>
-0.325677

> <r_i_glide_ligand_efficiency_ln>
-2.04693

> <r_i_glide_ligand_efficiency_sa>
-0.97703

> <r_i_glide_lipo>
-2.69167

> <r_i_glide_metal>
-0

> <r_i_glide_rewards>
-0.777126

> <r_i_glide_rmsd>
0.605551

$$$$
Test Ligand


 21 23  0  0  0  0            999 V2000
   34.2768    6.4601   23.4276 C   0  0  0  0  0  0
   34.7199    6.6807   24.7535 C   0  0  0  0  0  0
   32.9608    6.8443   23.0740 C   0  0  0  0  0  0
   33.8637    7.2655   25.7079 C   0  0  0  0  0  0
   32.1001    7.4207   24.0338 C   0  0  0  0  0  0
   32.5448    7.6388   25.3572 C   0  0  0  0  0  0
   31.6578    8.2493   26.3632 C   0  0  0  0  0  0
   31.3829    7.8493   27.6381 C   0  0  0  0  0  0
   31.8957    6.6637   28.4136 C   0  0  0  0  0  0
   30.4903    8.7246   28.2064 N   0  0  0  0  0  0
   31.7656    6.7961   29.7467 N   0  0  0  0  0  0
   30.1647    9.7304   27.3526 N   0  0  0  0  0  0
   32.1947    5.8187   30.7363 C   0  0  0  0  0  0
   30.8430    9.4334   26.2330 C   0  0  0  0  0  0
   33.6957    5.9781   31.0077 C   0  0  0  0  0  0
   30.7874   10.2877   25.0301 C   0  0  0  0  0  0
   31.9854   10.7833   24.4695 C   0  0  0  0  0  0
   31.9583   11.6080   23.3306 C   0  0  0  0  0  0
   30.7247   11.9044   22.7018 C   0  0  0  0  0  0
   29.5221   11.4297   23.2588 C   0  0  0  0  0  0
   29.5448   10.6400   24.4309 C   0  0  0  0  0  0
  1  2  1  0  0  0
  1  3  2  0  0  0
  2  4  2  0  0  0
  3  5  1  0  0  0
  4  6  1  0  0  0
  5  6  2  0  0  0
  6  7  1  0  0  0
  7  8  2  0  0  0
  7 14  1  0  0  0
  8  9  1  0  0  0
  8 10  1  0  0  0
  9 11  1  0  0  0
 10 12  1  0  0  0
 11 13  1  0  0  0
 12 14  2  0  0  0
 13 15  1  0  0  0
 14 16  1  0  0  0
 16 17  1  0  0  0
 16 21  2  0  0  0
 17 18  2  0  0  0
 18 19  1  0  0  0
 19 20  2  0  0  0
 20 21  1  0  0  0
M  END
> <i_i_glide_confnum>
1

> <i_i_glide_lignum>
1

> <i_i_glide_posenum>
177

> <r_i_docking_score>
-8.70173

> <r_i_glide_ecoul>
-15.8862

> <r_i_glide_einternal>
1.84397

> <r_i_glide_emodel>
-99.0481

> <r_i_glide_energy>
-62.44

> <r_i_glide_erotb>
0.517993

> <r_i_glide_esite>
-0.0274759

> <r_i_glide_evdw>
-46.5538

> <r_i_glide_gscore>
-8.70173

> <r_i_glide_hbond>
-0.97397

> <r_i_glide_ligand_efficiency>
-0.322286

> <r_i_glide_ligand_efficiency_ln>
-2.02562

> <r_i_glide_ligand_efficiency_sa>
-0.966858

> <r_i_glide_lipo>
-2.74283

> <r_i_glide_metal>
-0

> <r_i_glide_rewards>
-0.764823

> <r_i_glide_rmsd>
0.543804

$$$$
Test Ligand


 21 23  0  0  0  0            999 V2000
   34.5144    6.6833   23.3611 C   0  0  0  0  0  0
   33.1880    6.9515   22.9860 C   0  0  0  0  0  0
   34.9381    7.0224   24.6610 C   0  0  0  0  0  0
   32.2870    7.5460   23.8905 C   0  0  0  0  0  0
   34.0422    7.6076   25.5720 C   0  0  0  0  0  0
   32.7085    7.8735   25.1943 C   0  0  0  0  0  0
   31.7655    8.4568   26.1623 C   0  0  0  0  0  0
   31.4563    8.0176   27.4151 C   0  0  0  0  0  0
   31.9612    6.8234   28.1735 C   0  0  0  0  0  0
   30.4991    8.8399   27.9505 N   0  0  0  0  0  0
   31.7656    6.8973   29.5011 N   0  0  0  0  0  0
   30.1623    9.8254   27.0921 N   0  0  0  0  0  0
   32.1790    5.9073   30.4826 C   0  0  0  0  0  0
   30.8968    9.5864   26.0023 C   0  0  0  0  0  0
   33.4739    6.3765   31.1528 C   0  0  0  0  0  0
   30.8088   10.4312   24.8021 C   0  0  0  0  0  0
   31.9800   11.0176   24.2785 C   0  0  0  0  0  0
   31.9238   11.8291   23.1331 C   0  0  0  0  0  0
   30.6968   12.0157   22.4634 C   0  0  0  0  0  0
   29.5186   11.4761   23.0060 C   0  0  0  0  0  0
   29.5649   10.7043   24.1795 C   0  0  0  0  0  0
  1  2  1  0  0  0
  1  3  2  0  0  0
  2  4  2  0  0  0
  3  5  1  0  0  0
  4  6  1  0  0  0
  5  6  2  0  0  0
  6  7  1  0  0  0
  7  8  2  0  0  0
  7 14  1  0  0  0
  8  9  1  0  0  0
  8 10  1  0  0  0
  9 11  1  0  0  0
 10 12  1  0  0  0
 11 13  1  0  0  0
 12 14  2  0  0  0
 13 15  1  0  0  0
 14 16  1  0  0  0
 16 17  1  0  0  0
 16 21  2  0  0  0
 17 18  2  0  0  0
 18 19  1  0  0  0
 19 20  2  0  0  0
 20 21  1  0  0  0
M  END
> <i_i_glide_confnum>
9

> <i_i_glide_lignum>
1

> <i_i_glide_posenum>
294

> <r_i_docking_score>
-8.69162

> <r_i_glide_ecoul>
-14.7519

> <r_i_glide_einternal>
5.89466

> <r_i_glide_emodel>
-97.7232

> <r_i_glide_energy>
-63.1839

> <r_i_glide_erotb>
0.517993

> <r_i_glide_esite>
-0.0119369

> <r_i_glide_evdw>
-48.432

> <r_i_glide_gscore>
-8.69162

> <r_i_glide_hbond>
-0.870172

> <r_i_glide_ligand_efficiency>
-0.321912

> <r_i_glide_ligand_efficiency_ln>
-2.02327

> <r_i_glide_ligand_efficiency_sa>
-0.965735

> <r_i_glide_lipo>
-2.92829

> <r_i_glide_metal>
-0

> <r_i_glide_rewards>
-0.764823

> <r_i_glide_rmsd>
0.463026

$$$$