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#------------------------------------------------------------------------------
# This file is part of the OpenStructure project <www.openstructure.org>
#
# Copyright (C) 2008-2020 by the OpenStructure authors
#
# This library is free software; you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the Free
# Software Foundation; either version 3.0 of the License, or (at your option)
# any later version.
# This library is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this library; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
#------------------------------------------------------------------------------
from ._ost_conop import *
# The 20 standard amino acids in no particular order
STANDARD_AMINOACIDS=(
'ALA', 'ARG', 'ASN',
'ASP', 'GLN', 'GLU',
'LYS', 'SER', 'CYS',
'MET', 'TRP', 'TYR',
'THR', 'VAL', 'ILE',
'LEU', 'GLY', 'PRO',
'HIS', 'PHE',
)
def SetDefaultLib(compound_lib):
'''
Set the default compound library. The compound library is used by various
functions of the framework that requires knowledge of naming and
connectivity of residues.
'''
conop_inst=Conopology.Instance()
conop_inst.SetDefaultLib(compound_lib)
def GetDefaultLib():
conop_inst=Conopology.Instance()
return conop_inst.GetDefaultLib()
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