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//------------------------------------------------------------------------------
// This file is part of the OpenStructure project <www.openstructure.org>
//
// Copyright (C) 2008-2020 by the OpenStructure authors
//
// This library is free software; you can redistribute it and/or modify it under
// the terms of the GNU Lesser General Public License as published by the Free
// Software Foundation; either version 3.0 of the License, or (at your option)
// any later version.
// This library is distributed in the hope that it will be useful, but WITHOUT
// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
// details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with this library; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
//------------------------------------------------------------------------------
/*
* Authors: Marco Biasini, Juergen Haas
*/
#define BOOST_TEST_DYN_LINK
#include <boost/test/unit_test.hpp>
#include <ost/mol/mol.hh>
#include <ost/message.hh>
#include <iostream>
using namespace ost;
using namespace ost::mol;
template <typename HANDLE, typename ITER>
void test_res_handle_iterator_b(HANDLE ch) {
ITER r1=ch.ResiduesBegin();
ITER r2=ch.ResiduesEnd();
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "D");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "E");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "F");
++r1;
BOOST_CHECK(r1==r2);
}
template <typename HANDLE, typename ITER>
void test_res_handle_iterator_a(HANDLE eh) {
ITER r1=eh.ResiduesBegin();
ITER r2=eh.ResiduesEnd();
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "A");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "B");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "C");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "D");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "E");
++r1;
BOOST_CHECK(r1!=r2);
BOOST_CHECK_EQUAL((*r1).GetName(), "F");
++r1;
BOOST_CHECK(r1==r2);
}
template <typename HANDLE, typename ITER>
void test_atom_handle_iterator_c(HANDLE en) {
ITER a1=en.AtomsBegin();
ITER a2=en.AtomsEnd();
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "X");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "Y");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "U");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "V");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "M");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "N");
++a1;
BOOST_CHECK(a1==a2);
}
template <typename HANDLE, typename ITER>
void test_atom_handle_iterator_a(HANDLE ch) {
ITER a1=ch.AtomsBegin();
ITER a2=ch.AtomsEnd();
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "X");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "Y");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "U");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "V");
++a1;
BOOST_CHECK(a1==a2);
}
template <typename HANDLE, typename ITER>
void test_atom_handle_iterator_b(HANDLE rr) {
ITER a1=rr.AtomsBegin();
ITER a2=rr.AtomsEnd();
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "X");
++a1;
BOOST_CHECK(a1!=a2);
BOOST_CHECK_EQUAL((*a1).GetName(), "Y");
++a1;
BOOST_CHECK(a1==a2);
}
BOOST_AUTO_TEST_SUITE( mol_base );
BOOST_AUTO_TEST_CASE(chain_handle_iterator)
{
EntityHandle ent=CreateEntity();
XCSEditor editor=ent.EditXCS();
ChainHandle ch1=editor.InsertChain("A");
ChainHandle ch2=editor.InsertChain("B");
ChainHandle ch3=editor.InsertChain("C");
ChainHandleIter ch_it=ent.ChainsBegin();
ChainHandleIter ch_end=ent.ChainsEnd();
BOOST_CHECK(ch_it!=ch_end);
BOOST_CHECK_EQUAL((*ch_it).GetName(), "A");
++ch_it;
BOOST_CHECK(ch_it!=ch_end);
BOOST_CHECK_EQUAL((*ch_it).GetName(), "B");
++ch_it;
BOOST_CHECK(ch_it!=ch_end);
BOOST_CHECK_EQUAL((*ch_it).GetName(), "C");
++ch_it;
BOOST_CHECK(ch_it==ch_end);
}
BOOST_AUTO_TEST_CASE(test_res_handle_iterator)
{
EntityHandle eh=CreateEntity();
XCSEditor editor=eh.EditXCS();
ChainHandle ch1=editor.InsertChain("A");
editor.AppendResidue(ch1, "A");
editor.AppendResidue(ch1, "B");
editor.AppendResidue(ch1, "C");
// make sure the iterator knows how to deal with empty chains
ChainHandle ch3=editor.InsertChain("B");
ChainHandle ch2=editor.InsertChain("C");
editor.AppendResidue(ch2, "D");
editor.AppendResidue(ch2, "E");
editor.AppendResidue(ch2, "F");
EntityView v1=eh.CreateFullView();
test_res_handle_iterator_b<ChainHandle, ResidueHandleIter>(ch2);
test_res_handle_iterator_a<EntityHandle, ResidueHandleIter>(eh);
test_res_handle_iterator_a<EntityView, ResidueViewIter>(v1);
// make the sure the iterator knows how to deal with an empty chain at
// the end
ChainHandle ch4=editor.InsertChain("D");
test_res_handle_iterator_a<EntityHandle, ResidueHandleIter>(eh);
EntityView v2=eh.CreateFullView();
test_res_handle_iterator_a<EntityView, ResidueViewIter>(v2);
test_res_handle_iterator_b<ChainHandle, ResidueHandleIter>(ch2);
editor.AppendResidue(ch4, "D");
editor.AppendResidue(ch4, "E");
editor.AppendResidue(ch4, "F");
test_res_handle_iterator_b<ChainHandle, ResidueHandleIter>(ch2);
}
BOOST_AUTO_TEST_CASE(test_empty_iterators)
{
EntityHandle eh=CreateEntity();
BOOST_CHECK(eh.ChainsBegin()==eh.ChainsEnd());
BOOST_CHECK(eh.ResiduesBegin()==eh.ResiduesEnd());
BOOST_CHECK(eh.AtomsBegin()==eh.AtomsEnd());
XCSEditor editor=eh.EditXCS();
ChainHandle ch1=editor.InsertChain("A");
BOOST_CHECK(ch1.ResiduesBegin()==ch1.ResiduesEnd());
BOOST_CHECK(ch1.AtomsBegin()==ch1.AtomsEnd());
ResidueHandle r1=editor.AppendResidue(ch1, "A");
BOOST_CHECK(r1.AtomsBegin()==r1.AtomsEnd());
eh=CreateEntity();
editor=eh.EditXCS();
ch1=editor.InsertChain("A");
r1=editor.AppendResidue(ch1, "A");
ResidueHandle r2=editor.AppendResidue(ch1, "B");
editor.InsertAtom(r1, "X", geom::Vec3());
editor.InsertAtom(r1, "Y", geom::Vec3());
editor.InsertAtom(r2, "U", geom::Vec3());
editor.InsertAtom(r2, "V", geom::Vec3());
// testcase for ticket #120
EntityView ev=eh.CreateFullView();
AtomViewList avl=ev.GetAtomList();
for (AtomViewList::const_iterator i=avl.begin(), e=avl.end(); i!=e; ++i) {
ev.RemoveAtom(*i);
}
BOOST_CHECK(ev.AtomsBegin()==ev.AtomsEnd());
BOOST_CHECK(ev.GetAtomList().empty());
//BOOST_CHECK(ev.FindChain("A").AtomsBegin()==ev.FindChain("A").AtomsEnd());
}
BOOST_AUTO_TEST_CASE(test_atom_handle_iterator)
{
EntityHandle eh=CreateEntity();
XCSEditor editor=eh.EditXCS();
ChainHandle ch1=editor.InsertChain("A");
ResidueHandle r1=editor.AppendResidue(ch1, "A");
ResidueHandle r2=editor.AppendResidue(ch1, "B");
editor.InsertAtom(r1, "X", geom::Vec3());
editor.InsertAtom(r1, "Y", geom::Vec3());
editor.InsertAtom(r2, "U", geom::Vec3());
editor.InsertAtom(r2, "V", geom::Vec3());
ChainHandle ch2=editor.InsertChain("B");
ResidueHandle r4=editor.AppendResidue(ch2, "D");
editor.InsertAtom(r4, "M", geom::Vec3());
editor.InsertAtom(r4, "N", geom::Vec3());
test_atom_handle_iterator_a<ChainHandle, AtomHandleIter>(ch1);
test_atom_handle_iterator_b<ResidueHandle, AtomHandleIter>(r1);
test_atom_handle_iterator_c<EntityHandle, AtomHandleIter>(eh);
editor.InsertChain("C");
// make sure the iterator knows how to deal with an empty chain at the end
EntityView v=eh.CreateFullView();
test_atom_handle_iterator_c<EntityHandle, AtomHandleIter>(eh);
test_atom_handle_iterator_c<EntityView, AtomViewIter>(v);
}
BOOST_AUTO_TEST_SUITE_END();
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