File: pom.xml

package info (click to toggle)
opsin 1.2.0-1
  • links: PTS, VCS
  • area: main
  • in suites: wheezy
  • size: 14,112 kB
  • sloc: java: 27,441; xml: 7,675; makefile: 10
file content (240 lines) | stat: -rw-r--r-- 7,493 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <parent>
    <groupId>uk.ac.cam.ch.wwmm</groupId>
    <artifactId>wwmm-parent</artifactId>
    <version>4</version>
  </parent>
  <groupId>uk.ac.cam.ch.opsin</groupId>
  <artifactId>opsin</artifactId>
  <version>1.2.0</version>
  <packaging>pom</packaging>
  <name>OPSIN</name>
  <description>Open Parser for Systematic IUPAC Nomenclature</description>
  <url>http://opsin.ch.cam.ac.uk</url>
  <licenses>
    <license>
      <name>Artistic License 2.0</name>
      <url>http://www.opensource.org/licenses/artistic-license-2.0.php</url>
    </license>
  </licenses>
  <scm>
    <url>http://bitbucket.org/dan2097/opsin/</url>
    <connection>
      scm:hg:http://bitbucket.org/dan2097/opsin
    </connection>
    <developerConnection>
      scm:hg:http://bitbucket.org/dan2097/opsin
    </developerConnection>
  </scm>
  <developers>
    <developer>
      <name>Daniel Lowe</name>
      <email>dl387@cam.ac.uk</email>
      <url>http://bitbucket.org/dan2097</url>
      <organization>University of Cambridge</organization>
      <organizationUrl>http://www.cam.ac.uk</organizationUrl>
      <roles>
         <role>Lead Programmer</role>
      </roles>
    </developer>
  </developers>
  <contributors>
    <contributor>
      <name>Peter Corbett</name>
    </contributor>
    <contributor>
      <name>Albina Asadulina</name>
    </contributor>
    <contributor>
      <name>Rich Apodaca</name>
    </contributor>
  </contributors>
  <modules>
    <module>opsin-core</module>
    <module>opsin-inchi</module>
  </modules>
  <distributionManagement>
    <repository>
      <id>ucc</id>
      <url>https://maven.ch.cam.ac.uk/content/repositories/releases</url>
    </repository>
    <site>
      <id>apidoc</id>
      <url>scp://apidoc.ch.cam.ac.uk/opsin/</url>
    </site>
  </distributionManagement>
  <build>
    <plugins>
      <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <inherited>false</inherited>
        <configuration>
          <descriptors>
            <descriptor>fullAssembly.xml</descriptor>
          </descriptors>
           <archive>
              <manifest>
                 <mainClass>uk.ac.cam.ch.wwmm.opsin.NameToStructure</mainClass>
              </manifest>
           </archive>
       </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>cobertura-maven-plugin</artifactId>
        <configuration>
          <check>
            <haltOnFailure>false</haltOnFailure>
            <regexes>
              <regex>
                <pattern>uk.ac.cam.ch.wwmm.*</pattern>
                <branchRate>80</branchRate>
                <lineRate>80</lineRate>
              </regex>
            </regexes>
          </check>
          <instrumentation>
            <includes>
              <include>uk/ac/cam/ch/wwmm/**/*.class</include>
            </includes>
          </instrumentation>
        </configuration>
        <executions>
          <execution>
            <id>clean</id>
            <phase>pre-site</phase>
            <goals>
              <goal>clean</goal>
            </goals>
          </execution>
          <execution>
            <id>instrument</id>
            <phase>site</phase>
            <goals>
              <goal>instrument</goal>
              <goal>cobertura</goal>
              <goal>check</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <artifactId>maven-site-plugin</artifactId>
        <version>3.0</version>
      </plugin>
    </plugins>
  </build>
  <reporting>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-project-info-reports-plugin</artifactId>
        <reportSets>
          <reportSet>
            <reports>
              <report>index</report>
              <report>summary</report>
              <report>dependencies</report>
              <report>project-team</report>
              <report>license</report>
              <report>cim</report>
              <report>scm</report>
            </reports>
          </reportSet>
        </reportSets>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-javadoc-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-report-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jxr-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-pmd-plugin</artifactId>
        <configuration>
          <targetJdk>1.5</targetJdk>
          <linkXref>true</linkXref>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>cobertura-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>apt-maven-plugin</artifactId>
      </plugin>
    </plugins>
  </reporting>
  <dependencyManagement>
    <dependencies>
      <dependency>
        <groupId>dk.brics.automaton</groupId>
        <artifactId>automaton</artifactId>
        <version>1.11-8</version>
      </dependency>
      <dependency>
        <groupId>xom</groupId>
        <artifactId>xom</artifactId>
        <version>1.2.5</version>
        <exclusions>
          <exclusion>
            <groupId>xml-apis</groupId>
            <artifactId>xml-apis</artifactId>
          </exclusion>
          <exclusion>
            <groupId>xerces</groupId>
            <artifactId>xercesImpl</artifactId>
          </exclusion>
          <exclusion>
            <groupId>xalan</groupId>
            <artifactId>xalan</artifactId>
          </exclusion>
        </exclusions>
      </dependency>
      <dependency>
        <groupId>log4j</groupId>
        <artifactId>log4j</artifactId>
        <version>1.2.16</version>
      </dependency>
      <dependency>
        <groupId>junit</groupId>
        <artifactId>junit</artifactId>
        <version>4.8.2</version>
      </dependency>
      <dependency>
        <groupId>org.mockito</groupId>
        <artifactId>mockito-all</artifactId>
        <version>1.8.5</version>
      </dependency>
      <dependency>
        <groupId>uk.ac.cam.ch.opsin</groupId>
        <artifactId>opsin-core</artifactId>
        <version>${project.version}</version>
      </dependency>
      <dependency>
        <groupId>net.sf.jni-inchi</groupId>
        <artifactId>jni-inchi</artifactId>
        <version>0.8</version>
      </dependency>
      <dependency>
        <groupId>commons-io</groupId>
        <artifactId>commons-io</artifactId>
        <version>2.0.1</version>
      </dependency>
      <dependency>
        <groupId>commons-cli</groupId>
        <artifactId>commons-cli</artifactId>
        <version>1.2</version>
      </dependency>
    </dependencies>
  </dependencyManagement>
</project>