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Source: optimir
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Dylan Aïssi <daissi@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3,
python3-setuptools
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/optimir
Vcs-Git: https://salsa.debian.org/med-team/optimir.git
Homepage: https://github.com/FlorianThibord/OptimiR
Rules-Requires-Root: no
Package: optimir
Architecture: all
Depends: ${misc:Depends},
${shlibs:Depends},
${python3:Depends},
python3-pysam,
python3-biopython,
bowtie2,
cutadapt,
samtools
Recommends: r-cran-gridextra,
r-cran-ggplot2
Description: Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information
to assess the impact of variants on miRNA expression.
.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs,
isomiRs and polymiRs from miRSeq data, & study the impact of genetic
variations on polymiRs' expression.
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