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import os
import string
import unittest
from urllib import parse
import random
import inspect
import numpy as np
import pandas as pd
from Orange.data import Table
def parse_uri(uri):
"""Parse uri to db type and dictionary of connection parameters."""
if uri == "":
return "", dict()
parsed_uri = parse.urlparse(uri)
database = parsed_uri.path.strip('/')
if "/" in database:
database, table = database.split('/', 1)
else:
table = ""
params = parse.parse_qs(parsed_uri.query)
for key, value in params.items():
if len(params[key]) == 1:
params[key] = value[0]
params.update(dict(
host=parsed_uri.hostname,
port=parsed_uri.port,
user=parsed_uri.username,
database=database,
password=parsed_uri.password,
))
if table:
params['table'] = table
return parsed_uri.scheme, params
class TestParseUri(unittest.TestCase):
def test_parses_connection_uri(self):
parameters = parse_uri(
"sql://user:password@host:7678/database/table")
self.assertEqual("sql", parameters[0])
self.assertDictContainsSubset(dict(
host="host",
user="user",
password="password",
port=7678,
database="database",
table="table"
), parameters[1])
def test_parse_minimal_connection_uri(self):
parameters = parse_uri(
"sql://host/database/table")
self.assertEqual("sql", parameters[0])
self.assertDictContainsSubset(
dict(host="host", database="database", table="table"),
parameters[1]
)
def test_parse_empty(self):
parameters = parse_uri("")
self.assertEqual("", parameters[0])
self.assertDictContainsSubset(
dict(),
parameters[1]
)
def assertDictContainsSubset(self, subset, dictionary, msg=None):
"""Checks whether dictionary is a superset of subset.
This method has been copied from unittest/case.py and undeprecated.
"""
from unittest.case import safe_repr
missing = []
mismatched = []
for key, value in subset.items():
if key not in dictionary:
missing.append(key)
elif value != dictionary[key]:
mismatched.append('%s, expected: %s, actual: %s' %
(safe_repr(key), safe_repr(value),
safe_repr(dictionary[key])))
if not (missing or mismatched):
return
standardMsg = ''
if missing:
standardMsg = 'Missing: %s' % ','.join(safe_repr(m) for m in
missing)
if mismatched:
if standardMsg:
standardMsg += '; '
standardMsg += 'Mismatched values: %s' % ','.join(mismatched)
self.fail(self._formatMessage(msg, standardMsg))
def connection_params():
"""
Get environment variable that holds db connection parameters.
You can assign multiple connections by concatenating them with '|'.
"""
dburi = os.environ.get('ORANGE_TEST_DB_URI', "")
return dict(parse_uri(uri) for uri in dburi.split("|"))
class DBTestConnection:
"""Used to prepare the connection to the database"""
uri_name = ""
module = ""
def __init__(self, params):
self._params = params
self.is_module = False
self.is_active = False
self.try_connection()
@property
def params(self):
return self._params.copy()
def try_connection(self):
"""
Test if db specific connection module is installed and if you can
connect to db.
"""
raise NotImplementedError()
def create_sql_table(self, data, sql_column_types=None,
sql_column_names=None, table_name=None):
"""This creates a new sql table in the specific db."""
raise NotImplementedError()
@staticmethod
def _get_column_types(data):
if not data:
return [0] * 3
column_size = [0] * len(data[0])
for row in data:
for i, value in enumerate(row):
if isinstance(value, str):
column_size[i] = max(len(value), column_size[i])
return column_size
def drop_sql_table(self, table_name):
"""This drops given sql table in the specific db."""
raise NotImplementedError
def get_backend(self):
"""This returns the db specific Orange Backend."""
raise NotImplementedError
class PostgresTestConnection(DBTestConnection):
uri_name = "postgres"
module = "psycopg2"
def try_connection(self):
try:
import psycopg2
self.is_module = True
with psycopg2.connect(**self.params) as conn:
self.is_active = True
self.version = conn.server_version
except:
pass
def create_sql_table(self, data, sql_column_types=None,
sql_column_names=None, table_name=None):
data = list(data)
if table_name is None:
table_name = ''.join(random.choices(string.ascii_lowercase, k=16))
if sql_column_types is None:
column_size = self._get_column_types(data)
sql_column_types = [
'float' if size == 0 else 'varchar({})'.format(size)
for size in column_size
]
if sql_column_names is None:
sql_column_names = ["col{}".format(i)
for i in range(len(sql_column_types))]
else:
sql_column_names = map(lambda x: '"{}"'.format(x), sql_column_names)
drop_table_sql = "DROP TABLE IF EXISTS {}".format(table_name)
create_table_sql = "CREATE TABLE {} ({})".format(
table_name,
", ".join('{} {}'.format(n, t)
for n, t in zip(sql_column_names, sql_column_types)))
insert_values = ", ".join(
"({})".format(
", ".join("NULL" if pd.isna(v) else "'{}'".format(v)
for v, t in zip(row, sql_column_types))
) for row in data
)
insert_sql = "INSERT INTO {} VALUES {}".format(table_name,
insert_values)
import psycopg2
with psycopg2.connect(**self.params) as conn:
with conn.cursor() as curs:
curs.execute(drop_table_sql)
with conn.cursor() as curs:
curs.execute(create_table_sql)
if insert_values:
with conn.cursor() as curs:
curs.execute(insert_sql)
return self.params, table_name
def drop_sql_table(self, table_name):
import psycopg2
with psycopg2.connect(**self.params) as conn:
with conn.cursor() as curs:
curs.execute("DROP TABLE {}".format(table_name))
def get_backend(self):
from Orange.data.sql.backend import Psycopg2Backend
return Psycopg2Backend(self.params)
class MicrosoftTestConnection(DBTestConnection):
uri_name = "mssql"
module = "pymssql"
def try_connection(self):
try:
import pymssql
self.is_module = True
with pymssql.connect(**self.params):
self.is_active = True
except:
pass
def create_sql_table(self, data, sql_column_types=None,
sql_column_names=None, table_name=None):
data = list(data)
if table_name is None:
table_name = ''.join(random.choices(string.ascii_lowercase, k=16))
if sql_column_types is None:
column_size = self._get_column_types(data)
sql_column_types = [
'float' if size == 0 else 'varchar({})'.format(size)
for size in column_size
]
if sql_column_names is None:
sql_column_names = ["col{}".format(i)
for i in range(len(sql_column_types))]
else:
sql_column_names = map(lambda x: '"{}"'.format(x), sql_column_names)
drop_table_sql = "DROP TABLE IF EXISTS {}".format(table_name)
create_table_sql = "CREATE TABLE {} ({})".format(
table_name,
", ".join('{} {}'.format(n, t)
for n, t in zip(sql_column_names, sql_column_types)))
insert_values = ", ".join(
"({})".format(
", ".join("NULL" if pd.isna(v) else "'{}'".format(v)
for v, t in zip(row, sql_column_types))
) for row in data
)
insert_sql = "INSERT INTO {} VALUES {}".format(table_name,
insert_values)
import pymssql
with pymssql.connect(**self.params) as conn:
with conn.cursor() as cursor:
cursor.execute(drop_table_sql)
cursor.execute(create_table_sql)
if insert_values:
cursor.execute(insert_sql)
conn.commit()
return self.params, table_name
def drop_sql_table(self, table_name):
import pymssql
with pymssql.connect(**self.params) as conn:
with conn.cursor() as cursor:
cursor.execute("DROP TABLE {}".format(table_name))
conn.commit()
def get_backend(self):
from Orange.data.sql.backend import PymssqlBackend
return PymssqlBackend(self.params)
test_connections = {
PostgresTestConnection.uri_name: PostgresTestConnection,
MicrosoftTestConnection.uri_name: MicrosoftTestConnection
}
def dbs():
"""Parse env variable and initialize connection to given dbs."""
params = connection_params()
db_conn = {}
for c in params:
if c and c in test_connections:
db_conn[c] = test_connections[c](params[c])
return db_conn
class DataBaseTest:
db_conn = dbs()
@classmethod
def _check_db(cls, db):
ver = None
if ">" in db:
i = db.find(">")
db, ver = db[:i], db[i:]
elif "<" in db:
i = db.find("<")
db, ver = db[:i], db[i:]
if db in cls.db_conn:
if not cls.db_conn[db].is_module:
raise unittest.SkipTest(
"{} module is required for this database".format(
cls.db_conn[db].module))
elif not cls.db_conn[db].is_active:
raise unittest.SkipTest("Database is not running")
else:
if db in test_connections.keys():
raise unittest.SkipTest("No connection provided for {}".format(db))
else:
raise Exception("Unsupported database")
if ver is not None:
if ver[0] == ">" and cls.db_conn[db].version <= int(ver[1:]):
raise unittest.SkipTest(
"This test is only run database version higher then {}"
.format(ver[1:]))
if ver[0] == "<" and cls.db_conn[db].version >= int(ver[1:]):
raise unittest.SkipTest(
"This test is only run on database version lower then {}"
.format(ver[1:]))
return db
@classmethod
def _setup_test_with(cls, test, db):
"""This is used to setup the `db` database and run `test` on it"""
def new_test(test_self, *args):
new_db = cls._check_db(db)
test_self.current_db = new_db
error = None
if hasattr(test_self, "setUpDB"):
test_self.setUpDB()
try:
test(test_self, *args)
except Exception as ex:
error = ex
finally:
if hasattr(test_self, "tearDownDB"):
test_self.tearDownDB()
if error is not None:
raise error
return new_test
@classmethod
def run_on(cls, dbs):
"""
Decorator used to create new test for every given database.
For every db in the list of dbs create a new test that:
* changes create_sql_table, drop_sql_table and backend to those
implemented in the db subclass of DBTestConnection
* runs setUpDB if exists
* runs original test
* runs tearDownDB if exists
"""
def decorator(function):
if function.__name__.startswith("test_db_"):
return function
stack = inspect.stack()
frame = stack[1]
frame_locals = frame[0].f_locals
for db in dbs:
name = 'test_db_' + db + '_' + function.__name__[5:]
frame_locals[name] = cls._setup_test_with(function, db)
frame_locals[name].__name__ = name
frame_locals[name].place_as = function
if function.__doc__ is not None:
frame_locals[name].__doc__ = 'On ' + db + ' run: ' + \
function.__doc__
function.__test__ = False
return decorator
@property
def backend(self):
"""This is according to the db currently being tested"""
return self.db_conn[self.current_db].get_backend()
def create_sql_table(self, data, sql_column_types=None,
sql_column_names=None, table_name=None):
"""This is according to the db currently being tested"""
return self.db_conn[self.current_db]\
.create_sql_table(data, sql_column_types=sql_column_types,
sql_column_names=sql_column_names,
table_name=table_name)
def drop_sql_table(self, table_name):
"""This is according to the db currently being tested"""
return self.db_conn[self.current_db]\
.drop_sql_table(table_name=table_name)
def create_iris_sql_table(self):
iris = Table("iris")
cn = ["sepal length", "sepal width", "petal length", "petal width",
"iris"]
ct = ["float", "float", "float", "float", "varchar(15)"]
Y = np.array(iris.domain.class_var.values)[iris.Y.astype(int)]
data = [list(x) + [y] for x, y in zip(iris.X, Y)]
return self.create_sql_table(data, table_name="iris",
sql_column_names=cn, sql_column_types=ct)
def drop_iris_sql_table(self):
self.drop_sql_table("iris")
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