1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817
|
# Test methods with long descriptive names can omit docstrings
# pylint: disable=missing-docstring
import pickle
import contextlib
import unittest.mock
import unittest
import string
import numpy as np
from numpy.testing import assert_almost_equal
from Orange.data.sql.backend.base import BackendError
from Orange.data import filter, ContinuousVariable, DiscreteVariable, \
StringVariable, TimeVariable, Table, Domain
from Orange.data.sql.table import SqlTable
from Orange.preprocess.discretize import EqualWidth
from Orange.statistics.basic_stats import BasicStats, DomainBasicStats
from Orange.statistics.contingency import Continuous, Discrete, get_contingencies
from Orange.statistics.distribution import get_distributions
from Orange.tests.sql.base import DataBaseTest as dbt
class TestSqlTable(unittest.TestCase, dbt):
def setUpDB(self):
self.conn, self.iris = self.create_iris_sql_table()
def tearDownDB(self):
self.drop_iris_sql_table()
def float_variable(self, size):
return [i * .1 for i in range(size)]
def discrete_variable(self, size):
return ["mf"[i % 2] for i in range(size)]
def string_variable(self, size):
return string.ascii_letters[:size]
@contextlib.contextmanager
def sql_table_from_data(self, data, guess_values=True):
params, table_name = self.create_sql_table(data)
yield SqlTable(params, table_name,
inspect_values=guess_values)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_constructs_correct_attributes(self):
data = list(zip(self.float_variable(21),
self.discrete_variable(21),
self.string_variable(21)))
with self.sql_table_from_data(data) as table:
self.assertEqual(len(table.domain.variables), 2)
self.assertEqual(len(table.domain.metas), 1)
float_attr, discrete_attr = table.domain.variables
string_attr, = table.domain.metas
self.assertIsInstance(float_attr, ContinuousVariable)
self.assertEqual(float_attr.name, "col0")
self.assertTrue('"col0"' in float_attr.to_sql())
self.assertIsInstance(discrete_attr, DiscreteVariable)
self.assertEqual(discrete_attr.name, "col1")
self.assertTrue('"col1"' in discrete_attr.to_sql())
self.assertEqual(discrete_attr.values, ('f', 'm'))
self.assertIsInstance(string_attr, StringVariable)
self.assertEqual(string_attr.name, "col2")
self.assertTrue('"col2"' in string_attr.to_sql())
@dbt.run_on(["postgres"])
def test_make_attributes(self):
table1 = SqlTable(self.conn, self.iris)
table2 = SqlTable(self.conn, self.iris)
self.assertEqual(table1.domain[0], table2.domain[0])
@dbt.run_on(["postgres", "mssql"])
def test_len(self):
with self.sql_table_from_data(zip(self.float_variable(26))) as table:
self.assertEqual(len(table), 26)
with self.sql_table_from_data(zip(self.float_variable(0))) as table:
self.assertEqual(len(table), 0)
@dbt.run_on(["postgres", "mssql"])
def test_bool(self):
with self.sql_table_from_data(()) as table:
self.assertEqual(bool(table), False)
with self.sql_table_from_data(zip(self.float_variable(1))) as table:
self.assertEqual(bool(table), True)
@dbt.run_on(["postgres", "mssql"])
def test_len_with_filter(self):
data = zip(self.discrete_variable(26))
with self.sql_table_from_data(data) as table:
self.assertEqual(len(table), 26)
filtered_table = filter.SameValue(table.domain[0], 'm')(table)
self.assertEqual(len(filtered_table), 13)
table.domain[0].add_value('x')
filtered_table = filter.SameValue(table.domain[0], 'x')(table)
self.assertEqual(len(filtered_table), 0)
@dbt.run_on(["postgres", "mssql"])
def test_XY_small(self):
mat = np.random.randint(0, 2, (20, 3))
conn, table_name = self.create_sql_table(mat)
sql_table = SqlTable(conn, table_name,
type_hints=Domain([], DiscreteVariable(
name='col2', values=('0', '1', '2'))))
assert_almost_equal(sql_table.X, mat[:, :2])
assert_almost_equal(sql_table.Y.flatten(), mat[:, 2])
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
@unittest.mock.patch("Orange.data.sql.table.AUTO_DL_LIMIT", 100)
def test_XY_large(self):
from Orange.data.sql.table import AUTO_DL_LIMIT as DLL
mat = np.random.randint(0, 2, (DLL + 100, 3))
conn, table_name = self.create_sql_table(mat)
sql_table = SqlTable(conn, table_name,
type_hints=Domain([], DiscreteVariable(
name='col2', values=('0', '1', '2'))))
self.assertRaises(ValueError, lambda: sql_table.X)
self.assertRaises(ValueError, lambda: sql_table.Y)
with self.assertRaises(ValueError):
sql_table.download_data(DLL + 10)
# Download partial data
sql_table.download_data(DLL + 10, partial=True)
assert_almost_equal(sql_table.X, mat[:DLL + 10, :2])
assert_almost_equal(sql_table.Y.flatten()[:DLL + 10], mat[:DLL + 10, 2])
# Download all data
sql_table.download_data()
assert_almost_equal(sql_table.X, mat[:, :2])
assert_almost_equal(sql_table.Y.flatten(), mat[:, 2])
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_download_data(self):
mat = np.random.randint(0, 2, (20, 3))
conn, table_name = self.create_sql_table(mat)
for member in ('X', 'Y', 'metas', 'W', 'ids'):
sql_table = SqlTable(conn, table_name,
type_hints=Domain([], DiscreteVariable(
name='col2', values=('0', '1', '2'))))
self.assertFalse(getattr(sql_table, member) is None)
# has all necessary class members to create a standard Table
Table.from_table(sql_table.domain, sql_table)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_query_all(self):
table = SqlTable(self.conn, self.iris, inspect_values=True)
results = list(table)
self.assertEqual(len(results), 150)
@dbt.run_on(["postgres", "mssql"])
def test_unavailable_row(self):
table = SqlTable(self.conn, self.iris)
self.assertRaises(IndexError, lambda: table[151])
@dbt.run_on(["postgres", "mssql"])
def test_query_subset_of_attributes(self):
table = SqlTable(self.conn, self.iris)
attributes = [
self._mock_attribute("sepal length"),
self._mock_attribute("sepal width"),
self._mock_attribute("double width", '2 * "sepal width"')
]
results = list(table._query(
attributes
))
self.assertSequenceEqual(
results[:5],
[(5.1, 3.5, 7.0),
(4.9, 3.0, 6.0),
(4.7, 3.2, 6.4),
(4.6, 3.1, 6.2),
(5.0, 3.6, 7.2)]
)
@dbt.run_on(["postgres"])
def test_query_subset_of_rows(self):
table = SqlTable(self.conn, self.iris)
all_results = list(table._query())
results = list(table._query(rows=range(10)))
self.assertEqual(len(results), 10)
self.assertSequenceEqual(results, all_results[:10])
results = list(table._query(rows=range(10)))
self.assertEqual(len(results), 10)
self.assertSequenceEqual(results, all_results[:10])
results = list(table._query(rows=slice(None, 10)))
self.assertEqual(len(results), 10)
self.assertSequenceEqual(results, all_results[:10])
results = list(table._query(rows=slice(10, None)))
self.assertEqual(len(results), 140)
self.assertSequenceEqual(results, all_results[10:])
@dbt.run_on(["postgres", "mssql"])
def test_getitem_single_value(self):
table = SqlTable(self.conn, self.iris, inspect_values=True)
self.assertAlmostEqual(table[0, 0], 5.1)
self.assertAlmostEqual(table[0, table.domain[0]], 5.1)
self.assertEqual(table[0, 4], "Iris-setosa")
self.assertEqual(table[0, table.domain[4]], "Iris-setosa")
@dbt.run_on(["postgres", "mssql"])
def test_type_hints(self):
table = SqlTable(self.conn, self.iris, inspect_values=True)
self.assertEqual(len(table.domain.variables), 5)
self.assertEqual(len(table.domain.metas), 0)
table = SqlTable(self.conn, self.iris, inspect_values=True,
type_hints=Domain([], [], metas=[
StringVariable("iris")]))
self.assertEqual(len(table.domain.variables), 4)
self.assertEqual(len(table.domain.metas), 1)
@dbt.run_on(["postgres"])
def test_joins(self):
table = SqlTable(
self.conn,
"""SELECT a."sepal length",
b. "petal length",
CASE WHEN b."petal length" < 3 THEN '<'
ELSE '>'
END AS "qualitative petal length"
FROM iris a
INNER JOIN iris b ON a."sepal width" = b."sepal width"
WHERE a."petal width" < 1
ORDER BY a."sepal length", b. "petal length" ASC""",
type_hints=Domain([DiscreteVariable(
name="qualitative petal length",
values=('<', '>'))], []))
self.assertEqual(len(table), 498)
self.assertAlmostEqual(list(table[497]), [5.8, 1.2, 0.])
def _mock_attribute(self, attr_name, formula=None):
if formula is None:
formula = '"%s"' % attr_name
class Attr:
name = attr_name
@staticmethod
def to_sql():
return formula
return Attr
@dbt.run_on(["postgres"])
def test_universal_table(self):
_, table_name = self.construct_universal_table()
SqlTable(self.conn, """
SELECT
v1.col2 as v1,
v2.col2 as v2,
v3.col2 as v3,
v4.col2 as v4,
v5.col2 as v5
FROM %(table_name)s v1
INNER JOIN %(table_name)s v2 ON v2.col0 = v1.col0 AND v2.col1 = 2
INNER JOIN %(table_name)s v3 ON v3.col0 = v2.col0 AND v3.col1 = 3
INNER JOIN %(table_name)s v4 ON v4.col0 = v1.col0 AND v4.col1 = 4
INNER JOIN %(table_name)s v5 ON v5.col0 = v1.col0 AND v5.col1 = 5
WHERE v1.col1 = 1
ORDER BY v1.col0
""" % dict(table_name='"%s"' % table_name))
self.drop_sql_table(table_name)
def construct_universal_table(self):
values = []
for row in range(1, 6):
for col in range(1, 6):
values.extend((row, col, row * col))
table = Table.from_numpy(None, np.array(values).reshape((-1, 3)))
return self.create_sql_table(table)
IRIS_VARIABLE = DiscreteVariable(
"iris", values=('Iris-setosa', 'Iris-virginica', 'Iris-versicolor'))
@dbt.run_on(["postgres", "mssql"])
def test_class_var_type_hints(self):
iris = SqlTable(self.conn, self.iris,
type_hints=Domain([], self.IRIS_VARIABLE))
self.assertEqual(len(iris.domain.class_vars), 1)
self.assertEqual(iris.domain.class_vars[0].name, 'iris')
@dbt.run_on(["postgres", "mssql"])
def test_meta_type_hints(self):
iris = SqlTable(
self.conn,
self.iris,
type_hints=Domain([], metas=[self.IRIS_VARIABLE]),
)
self.assertEqual(len(iris.domain.metas), 1)
self.assertEqual(iris.domain.metas[0].name, "iris")
np.testing.assert_array_equal(
iris.metas.flatten(), [0] * 50 + [2] * 50 + [1] * 50
)
@dbt.run_on(["postgres", "mssql"])
def test_metas_type_hints(self):
iris = SqlTable(self.conn, self.iris,
type_hints=Domain([], [], metas=[self.IRIS_VARIABLE]))
self.assertEqual(len(iris.domain.metas), 1)
self.assertEqual(iris.domain.metas[0].name, 'iris')
@dbt.run_on(["postgres", "mssql"])
def test_select_all(self):
iris = SqlTable(self.conn, "SELECT * FROM iris",
type_hints=Domain([], self.IRIS_VARIABLE))
self.assertEqual(len(iris.domain.variables), 5)
@dbt.run_on(["postgres"])
def test_discrete_bigint(self):
table = np.arange(6).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['bigint'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_continous_bigint(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['bigint'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_discrete_int(self):
table = np.arange(6).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['int'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_continous_int(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['int'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_discrete_smallint(self):
table = np.arange(6).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['smallint'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_continous_smallint(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['smallint'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_boolean(self):
table = np.array(['F', 'T', 0, 1, 'False', 'True']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['boolean'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_discrete_char(self):
table = np.array(['M', 'F', 'M', 'F', 'M', 'F']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['char(1)'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_discrete_bigger_char(self):
"""Test if the discrete values are the same for bigger char fields"""
table = np.array(['M', 'F', 'M', 'F', 'M', 'F']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['char(10)'])
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertSequenceEqual(sql_table.domain[0].values, ['F', 'M'])
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_meta_char(self):
table = np.array(list('ABCDEFGHIJKLMNOPQRSTUVW')).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['char(1)'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
self.drop_sql_table(table_name)
# test if NULL is transformed to emtpy string
table = np.array(list("ABCDEFGHIJKLMNOPQRSTUVW") + [None]).reshape(
-1, 1
)
conn, table_name = self.create_sql_table(table, ["char(1)"])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
self.assertEqual("", sql_table.metas[-1, 0])
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
self.assertEqual("", sql_table.metas[-1, 0])
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_discrete_varchar(self):
table = np.array(['M', 'F', 'M', 'F', 'M', 'F']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['varchar(1)'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, DiscreteVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_meta_varchar(self):
table = np.array(list('ABCDEFGHIJKLMNOPQRSTUVW')).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['varchar(1)'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_time_date(self):
table = np.array(['2014-04-12', '2014-04-13', '2014-04-14',
'2014-04-15', '2014-04-16']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['date'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_time_time(self):
table = np.array(['17:39:51', '11:51:48.46', '05:20:21.492149',
'21:47:06', '04:47:35.8']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['time'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_time_timetz(self):
table = np.array(['17:39:51+0200', '11:51:48.46+01', '05:20:21.4921',
'21:47:06-0600', '04:47:35.8+0330']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['timetz'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_time_timestamp(self):
table = np.array(['2014-07-15 17:39:51.348149',
'2008-10-05 11:51:48.468149',
'2008-11-03 05:20:21.492149',
'2015-01-02 21:47:06.228149',
'2016-04-16 04:47:35.892149']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['timestamp'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_time_timestamptz(self):
table = np.array(['2014-07-15 17:39:51.348149+0200',
'2008-10-05 11:51:48.468149+02',
'2008-11-03 05:20:21.492149+01',
'2015-01-02 21:47:06.228149+0100',
'2016-04-16 04:47:35.892149+0330']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['timestamptz'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, TimeVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_double_precision(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['double precision'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_numeric(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['numeric(15, 2)'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_real(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['real'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_serial(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['serial'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres>90200"])
def test_smallserial(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['smallserial'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres>90200"])
def test_bigserial(self):
table = np.arange(25).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['bigserial'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstAttrIsInstance(sql_table, ContinuousVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_text(self):
table = np.array(list('ABCDEFGHIJKLMNOPQRSTUVW')).reshape((-1, 1))
conn, table_name = self.create_sql_table(table, ['text'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_other(self):
table = np.array(['bcd4d9c0-361e-bad4-7ceb-0d171cdec981',
'544b7ddc-d861-0201-81c8-9f7ad0bbf531',
'b35a10f7-7901-f313-ec16-5ad9778040a6',
'b267c4be-4a26-60b5-e664-737a90a40e93']).reshape(-1, 1)
conn, table_name = self.create_sql_table(table, ['uuid'])
sql_table = SqlTable(conn, table_name, inspect_values=False)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
sql_table = SqlTable(conn, table_name, inspect_values=True)
self.assertFirstMetaIsInstance(sql_table, StringVariable)
filters = filter.Values([filter.FilterString(-1, filter.FilterString.Equal, 'foo')])
self.assertEqual(len(filters(sql_table)), 0)
self.drop_sql_table(table_name)
@dbt.run_on(["postgres", "mssql"])
def test_recovers_connection_after_sql_error(self):
conn, table_name = self.create_sql_table(
np.arange(25).reshape((-1, 1)))
sql_table = SqlTable(conn, table_name)
try:
broken_query = "SELECT 1/%s FROM %s" % (
sql_table.domain.attributes[0].to_sql(), sql_table.table_name)
with sql_table.backend.execute_sql_query(broken_query) as cur:
cur.fetchall()
except BackendError:
pass
working_query = "SELECT %s FROM %s" % (
sql_table.domain.attributes[0].to_sql(), sql_table.table_name)
with sql_table.backend.execute_sql_query(working_query) as cur:
cur.fetchall()
self.drop_sql_table(table_name)
@dbt.run_on(["postgres"])
def test_basic_stats(self):
iris = SqlTable(self.conn, self.iris, inspect_values=True)
stats = BasicStats(iris, iris.domain['sepal length'])
self.assertAlmostEqual(stats.min, 4.3)
self.assertAlmostEqual(stats.max, 7.9)
self.assertAlmostEqual(stats.mean, 5.8, 1)
self.assertEqual(stats.nans, 0)
self.assertEqual(stats.non_nans, 150)
domain_stats = DomainBasicStats(iris, include_metas=True)
self.assertEqual(len(domain_stats.stats),
len(iris.domain.variables) + len(iris.domain.metas))
stats = domain_stats['sepal length']
self.assertAlmostEqual(stats.min, 4.3)
self.assertAlmostEqual(stats.max, 7.9)
self.assertAlmostEqual(stats.mean, 5.8, 1)
self.assertEqual(stats.nans, 0)
self.assertEqual(stats.non_nans, 150)
@dbt.run_on(["postgres"])
@unittest.mock.patch("Orange.data.sql.table.LARGE_TABLE", 100)
def test_basic_stats_on_large_data(self):
# By setting LARGE_TABLE to 100, iris will be treated as
# a large table and sampling will be used. As the table
# is actually small, time base sampling should return
# all rows, so the same assertions can be used.
iris = SqlTable(self.conn, self.iris, inspect_values=True)
stats = BasicStats(iris, iris.domain['sepal length'])
self.assertAlmostEqual(stats.min, 4.3)
self.assertAlmostEqual(stats.max, 7.9)
self.assertAlmostEqual(stats.mean, 5.8, 1)
self.assertEqual(stats.nans, 0)
self.assertEqual(stats.non_nans, 150)
domain_stats = DomainBasicStats(iris, include_metas=True)
self.assertEqual(len(domain_stats.stats),
len(iris.domain.variables) + len(iris.domain.metas))
stats = domain_stats['sepal length']
self.assertAlmostEqual(stats.min, 4.3)
self.assertAlmostEqual(stats.max, 7.9)
self.assertAlmostEqual(stats.mean, 5.8, 1)
self.assertEqual(stats.nans, 0)
self.assertEqual(stats.non_nans, 150)
@dbt.run_on(["postgres", "mssql"])
def test_distributions(self):
iris = SqlTable(self.conn, self.iris, inspect_values=True)
dists = get_distributions(iris)
self.assertEqual(len(dists), 5)
dist = dists[0]
self.assertAlmostEqual(dist.min(), 4.3)
self.assertAlmostEqual(dist.max(), 7.9)
self.assertAlmostEqual(dist.mean(), 5.8, 1)
@dbt.run_on(["postgres"])
def test_contingencies(self):
iris = SqlTable(self.conn, self.iris, inspect_values=True)
iris.domain = Domain(iris.domain[2:4] + (EqualWidth()(iris, iris.domain['sepal width']),),
iris.domain['iris'])
conts = get_contingencies(iris)
self.assertEqual(len(conts), 3)
self.assertIsInstance(conts[0], Continuous)
self.assertIsInstance(conts[1], Continuous)
self.assertIsInstance(conts[2], Discrete)
@dbt.run_on(["postgres"])
def test_pickling_restores_connection_pool(self):
iris = SqlTable(self.conn, self.iris, inspect_values=True)
iris2 = pickle.loads(pickle.dumps(iris))
self.assertEqual(iris[0], iris2[0])
@dbt.run_on(["postgres"])
def test_pickling_respects_downloaded_state(self):
iris = SqlTable(self.conn, self.iris, inspect_values=True)
iris2 = pickle.loads(pickle.dumps(iris))
# pylint: disable=protected-access
self.assertIsNone(iris._X)
self.assertIsNone(iris2._X)
self.assertIsNone(iris._ids)
self.assertIsNone(iris2._ids)
# trigger download into X, Y, metas
iris.X.shape[0] # pylint: disable=pointless-statement
self.assertIsNotNone(iris._X)
self.assertIsNotNone(iris._ids)
iris2 = pickle.loads(pickle.dumps(iris))
self.assertIsNotNone(iris2._X)
self.assertIsNotNone(iris2._ids)
np.testing.assert_equal(iris.X, iris2.X)
self.assertEqual(len(set(iris.ids) | set(iris2.ids)), 300)
@dbt.run_on(["postgres"])
def test_list_tables_with_schema(self):
with self.backend.execute_sql_query("DROP SCHEMA IF EXISTS orange_tests CASCADE") as cur:
cur.execute("CREATE SCHEMA orange_tests")
cur.execute("CREATE TABLE orange_tests.efgh (id int)")
cur.execute("INSERT INTO orange_tests.efgh (id) VALUES (1)")
cur.execute("INSERT INTO orange_tests.efgh (id) VALUES (2)")
try:
tables = self.backend.list_tables("orange_tests")
self.assertTrue(any([t.name == "efgh" for t in tables]))
SqlTable(self.conn, tables[0], inspect_values=True)
finally:
with self.backend.execute_sql_query("DROP SCHEMA IF EXISTS orange_tests CASCADE"):
pass
@dbt.run_on(["postgres", "mssql"])
def test_nan_frequency(self):
ar = np.random.random((4, 3))
ar[:2, 1:] = np.nan
conn, table_name = self.create_sql_table(ar)
table = SqlTable(conn, table_name, inspect_values=False)
table.domain = Domain(table.domain.attributes[:-1],
table.domain.attributes[-1])
self.assertEqual(table.get_nan_frequency_class(), 0.5)
self.assertEqual(table.get_nan_frequency_attribute(), 0.25)
self.drop_sql_table(table_name)
def assertFirstAttrIsInstance(self, table, variable_type):
self.assertGreater(len(table.domain.variables), 0)
attr = table.domain[0]
self.assertIsInstance(attr, variable_type)
def assertFirstMetaIsInstance(self, table, variable_type):
self.assertGreater(len(table.domain.metas), 0)
attr = table.domain[-1]
self.assertIsInstance(attr, variable_type)
if __name__ == "__main__":
unittest.main()
|