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import os
import logging
from itertools import chain
from urllib.parse import urlparse
from typing import List, Dict, Any
import numpy as np
from AnyQt.QtWidgets import \
QStyle, QComboBox, QMessageBox, QGridLayout, QLabel, \
QLineEdit, QSizePolicy as Policy, QCompleter
from AnyQt.QtCore import Qt, QTimer, QSize, QUrl
from orangewidget.utils.filedialogs import format_filter
from orangewidget.workflow.drophandler import SingleUrlDropHandler
from Orange.data.table import Table, get_sample_datasets_dir
from Orange.data.io import FileFormat, UrlReader, class_from_qualified_name
from Orange.data.io_base import MissingReaderException
from Orange.util import log_warnings
from Orange.widgets import widget, gui
from Orange.widgets.utils.localization import pl
from Orange.widgets.settings import Setting, ContextSetting, \
PerfectDomainContextHandler, SettingProvider
from Orange.widgets.utils.domaineditor import DomainEditor
from Orange.widgets.utils.itemmodels import PyListModel
from Orange.widgets.utils.filedialogs import RecentPathsWComboMixin, \
open_filename_dialog, stored_recent_paths_prepend
from Orange.widgets.utils.filedialogs import OWUrlDropBase
from Orange.widgets.utils.widgetpreview import WidgetPreview
from Orange.widgets.widget import Output, Msg
from Orange.widgets.utils.combobox import TextEditCombo
from Orange.widgets.utils.state_summary import missing_values
# Backward compatibility: class RecentPath used to be defined in this module,
# and it is used in saved (pickled) settings. It must be imported into the
# module's namespace so that old saved settings still work
from Orange.widgets.utils.filedialogs import RecentPath
DEFAULT_READER_TEXT = "Determine type from the file extension"
log = logging.getLogger(__name__)
def add_origin(examples, filename):
"""
Adds attribute with file location to each string variable
Used for relative filenames stored in string variables (e.g. pictures)
TODO: we should consider a cleaner solution (special variable type, ...)
"""
if not filename:
return
strings = [var
for var in examples.domain.variables + examples.domain.metas
if var.is_string]
dir_name, _ = os.path.split(filename)
for var in strings:
if "type" in var.attributes and "origin" not in var.attributes:
var.attributes["origin"] = dir_name
class NamedURLModel(PyListModel):
def __init__(self, mapping):
self.mapping = mapping
super().__init__()
def data(self, index, role=Qt.DisplayRole):
data = super().data(index, role)
if role == Qt.DisplayRole:
return self.mapping.get(data, data)
return data
def add_name(self, url, name):
self.mapping[url] = name
self.modelReset.emit()
class LineEditSelectOnFocus(QLineEdit):
def focusInEvent(self, event):
super().focusInEvent(event)
# If selectAll is called directly, placing the cursor unselects the text
QTimer.singleShot(0, self.selectAll)
class OWFile(OWUrlDropBase, RecentPathsWComboMixin):
name = "File"
id = "orange.widgets.data.file"
description = "Read data from an input file or network " \
"and send a data table to the output."
icon = "icons/File.svg"
priority = 10
category = "Data"
keywords = "file, load, read, open"
class Outputs:
data = Output("Data", Table,
doc="Attribute-valued dataset read from the input file.")
want_main_area = False
buttons_area_orientation = None
SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
SIZE_LIMIT = 1e7
LOCAL_FILE, URL = range(2)
settingsHandler = PerfectDomainContextHandler(
match_values=PerfectDomainContextHandler.MATCH_VALUES_ALL
)
# pylint seems to want declarations separated from definitions
recent_paths: List[RecentPath]
recent_urls: List[str]
variables: list
# Overload RecentPathsWidgetMixin.recent_paths to set defaults
recent_paths = Setting([
RecentPath("", "sample-datasets", "iris.tab"),
RecentPath("", "sample-datasets", "titanic.tab"),
RecentPath("", "sample-datasets", "housing.tab"),
RecentPath("", "sample-datasets", "heart_disease.tab"),
RecentPath("", "sample-datasets", "brown-selected.tab"),
RecentPath("", "sample-datasets", "zoo.tab"),
])
recent_urls = Setting([])
source = Setting(LOCAL_FILE)
sheet_names = Setting({})
url = Setting("")
variables = ContextSetting([])
domain_editor = SettingProvider(DomainEditor)
class Information(widget.OWWidget.Information):
no_file_selected = Msg("No file selected.")
class Warning(widget.OWWidget.Warning):
file_too_big = Msg("The file is too large to load automatically."
" Press Reload to load.")
load_warning = Msg("Read warning:\n{}")
performance_warning = Msg(
"Categorical variables with >100 values may decrease performance.")
renamed_vars = Msg("Some variables have been renamed "
"to avoid duplicates.\n{}")
multiple_targets = Msg("Most widgets do not support multiple targets")
class Error(widget.OWWidget.Error):
file_not_found = Msg("File not found.")
missing_reader = Msg("Missing reader.")
select_file_type = Msg("Select file type.")
sheet_error = Msg("Error listing available sheets.")
unknown = Msg("Read error:\n{}")
unknown_select = Msg(
"Read error, possibly due to incorrect choice of file type:\n{}")
UserAdviceMessages = [
widget.Message(
"Use CSV File Import widget for advanced options "
"for comma-separated files",
"use-csv-file-import"),
widget.Message(
"This widget loads only tabular data. Use other widgets to load "
"other data types like models, distance matrices and networks.",
"other-data-types"
)
]
def __init__(self):
super().__init__()
RecentPathsWComboMixin.__init__(self)
self.domain = None
self.data = None
self.loaded_file = ""
self.reader = None
readers = [f for f in FileFormat.formats
if getattr(f, 'read', None)
and getattr(f, "EXTENSIONS", None)]
def group_readers_per_addon_key(w):
# readers from Orange.data.io should go first
def package(w):
package = w.qualified_name().split(".")[:-1]
package = package[:2]
if ".".join(package) == "Orange.data":
return ["0"] # force "Orange" to come first
return package
return package(w), w.DESCRIPTION
self.available_readers = sorted(set(readers),
key=group_readers_per_addon_key)
layout = QGridLayout()
layout.setSpacing(4)
gui.widgetBox(self.controlArea, orientation=layout, box='Source')
vbox = gui.radioButtons(None, self, "source", box=True,
callback=self.load_data, addToLayout=False)
rb_button = gui.appendRadioButton(vbox, "File:", addToLayout=False)
layout.addWidget(rb_button, 0, 0, Qt.AlignVCenter)
box = gui.hBox(None, addToLayout=False, margin=0)
box.setSizePolicy(Policy.Expanding, Policy.Fixed)
self.file_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
self.file_combo.setMinimumSize(QSize(100, 1))
self.file_combo.activated[int].connect(self.select_file)
box.layout().addWidget(self.file_combo)
layout.addWidget(box, 0, 1)
file_button = gui.button(
None, self, '...', callback=self.browse_file, autoDefault=False)
file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
layout.addWidget(file_button, 0, 2)
reload_button = gui.button(
None, self, "Reload", callback=self.load_data, autoDefault=False)
reload_button.setIcon(self.style().standardIcon(
QStyle.SP_BrowserReload))
reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
layout.addWidget(reload_button, 0, 3)
self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
self.sheet_combo = QComboBox()
self.sheet_combo.textActivated.connect(self.select_sheet)
self.sheet_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
self.sheet_combo.setMinimumSize(QSize(50, 1))
self.sheet_label = QLabel()
self.sheet_label.setText('Sheet')
self.sheet_label.setSizePolicy(
Policy.MinimumExpanding, Policy.Fixed)
self.sheet_box.layout().addWidget(
self.sheet_label, Qt.AlignLeft)
self.sheet_box.layout().addWidget(
self.sheet_combo, Qt.AlignVCenter)
layout.addWidget(self.sheet_box, 2, 1)
self.sheet_box.hide()
rb_button = gui.appendRadioButton(vbox, "URL:", addToLayout=False)
layout.addWidget(rb_button, 3, 0, Qt.AlignVCenter)
self.url_combo = url_combo = TextEditCombo()
url_model = NamedURLModel(self.sheet_names)
url_model.wrap(self.recent_urls)
url_combo.setLineEdit(LineEditSelectOnFocus())
url_combo.setModel(url_model)
url_combo.setSizePolicy(Policy.Ignored, Policy.Fixed)
url_combo.setInsertPolicy(url_combo.InsertAtTop)
url_edit = url_combo.lineEdit()
margins = url_edit.textMargins()
l, t, r, b = margins.left(), margins.top(), margins.right(), margins.bottom()
url_edit.setTextMargins(l + 5, t, r, b)
layout.addWidget(url_combo, 3, 1, 1, 3)
url_combo.activated.connect(self._url_set)
# whit completer we set that combo box is case sensitive when
# matching the history
completer = QCompleter()
completer.setCaseSensitivity(Qt.CaseSensitive)
url_combo.setCompleter(completer)
layout = QGridLayout()
layout.setSpacing(4)
gui.widgetBox(self.controlArea, orientation=layout, box='File Type')
box = gui.hBox(None, addToLayout=False, margin=0)
box.setSizePolicy(Policy.Expanding, Policy.Fixed)
self.reader_combo = QComboBox(self)
self.reader_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
self.reader_combo.setMinimumSize(QSize(100, 1))
self.reader_combo.activated[int].connect(self.on_reader_change)
box.layout().addWidget(self.reader_combo)
layout.addWidget(box, 0, 1)
box = gui.vBox(self.controlArea, "Info")
self.infolabel = gui.widgetLabel(box, 'No data loaded.')
box = gui.widgetBox(self.controlArea, "Columns (Double click to edit)")
self.domain_editor = DomainEditor(self)
self.editor_model = self.domain_editor.model()
box.layout().addWidget(self.domain_editor)
box = gui.hBox(box)
gui.button(
box, self, "Reset", callback=self.reset_domain_edit,
autoDefault=False
)
gui.rubber(box)
self.apply_button = gui.button(
box, self, "Apply", callback=self.apply_domain_edit)
self.apply_button.setEnabled(False)
self.apply_button.setFixedWidth(170)
self.editor_model.dataChanged.connect(
lambda: self.apply_button.setEnabled(True))
hBox = gui.hBox(self.controlArea)
gui.rubber(hBox)
gui.button(
hBox, self, "Browse documentation datasets",
callback=lambda: self.browse_file(True), autoDefault=False)
gui.rubber(hBox)
self.set_file_list()
# Must not call open_file from within __init__. open_file
# explicitly re-enters the event loop (by a progress bar)
self.setAcceptDrops(True)
if self.source == self.LOCAL_FILE:
last_path = self.last_path()
if last_path and os.path.exists(last_path) and \
os.path.getsize(last_path) > self.SIZE_LIMIT:
self.Warning.file_too_big()
return
QTimer.singleShot(0, self.load_data)
def sizeHint(self):
return QSize(600, 550)
def select_file(self, n):
assert n < len(self.recent_paths)
super().select_file(n)
if self.recent_paths:
self.source = self.LOCAL_FILE
self.load_data()
self.set_file_list()
def select_sheet(self):
# pylint: disable=unsubscriptable-object
self.recent_paths[0].sheet = self.sheet_combo.currentText()
self.load_data()
def on_reader_change(self, n):
self.select_reader(n)
self.load_data()
def select_reader(self, n):
if self.source != self.LOCAL_FILE:
return # ignore for URL's
if self.recent_paths:
path = self.recent_paths[0] # pylint: disable=unsubscriptable-object
if n == 0: # default
path.file_format = None
elif n <= len(self.available_readers):
reader = self.available_readers[n - 1]
path.file_format = reader.qualified_name()
else: # the rest include just qualified names
path.file_format = self.reader_combo.itemText(n)
def _url_set(self):
index = self.url_combo.currentIndex()
url = self.url_combo.currentText()
url = url.strip()
if not urlparse(url).scheme:
url = 'http://' + url
self.url_combo.setItemText(index, url)
if index != 0:
model = self.url_combo.model()
root = self.url_combo.rootModelIndex()
model.moveRow(root, index, root, 0)
assert self.url_combo.currentIndex() == 0
self.source = self.URL
self.load_data()
def browse_file(self, in_demos=False):
if in_demos:
start_file = get_sample_datasets_dir()
if not os.path.exists(start_file):
QMessageBox.information(
None, "File",
"Cannot find the directory with documentation datasets")
return
else:
start_file = self.last_path() or os.path.expanduser("~/")
filename, reader, _ = open_filename_dialog(
start_file, None, self.available_readers,
add_all="*")
if not filename:
return
self.add_path(filename)
if reader is not None:
# pylint: disable=unsubscriptable-object
self.recent_paths[0].file_format = reader.qualified_name()
self.source = self.LOCAL_FILE
self.load_data()
# Open a file, create data from it and send it over the data channel
def load_data(self):
# We need to catch any exception type since anything can happen in
# file readers
self.closeContext()
self.domain_editor.set_domain(None)
self.apply_button.setEnabled(False)
self.clear_messages()
self.set_file_list()
error = self._try_load()
if error:
error()
self.data = None
self.sheet_box.hide()
self.Outputs.data.send(None)
self.infolabel.setText("No data.")
def _try_load(self):
self._initialize_reader_combo()
# pylint: disable=broad-except
if self.source == self.LOCAL_FILE:
if self.last_path() is None:
return self.Information.no_file_selected
elif not os.path.exists(self.last_path()):
return self.Error.file_not_found
else:
url = self.url_combo.currentText().strip()
if not url:
return self.Information.no_file_selected
try:
self.reader = self._get_reader() # also sets current reader index
assert self.reader is not None
except MissingReaderException:
if self.reader_combo.currentIndex() > 0:
return self.Error.missing_reader
else:
return self.Error.select_file_type
except Exception as ex:
log.exception(ex)
if self.reader_combo.currentIndex() > 0:
return lambda x=ex: self.Error.unknown(str(x))
else:
return lambda x=ex: self.Error.unknown_select(str(x))
try:
self._update_sheet_combo()
except Exception:
return self.Error.sheet_error
with log_warnings() as warnings:
try:
data = self.reader.read()
except Exception as ex:
log.exception(ex)
return lambda x=ex: self.Error.unknown(str(x))
if warnings:
self.Warning.load_warning(warnings[-1].message.args[0])
self.infolabel.setText(self._describe(data))
self.loaded_file = self.last_path()
add_origin(data, self.loaded_file)
self.data = data
self.openContext(data.domain)
self.apply_domain_edit() # sends data
return None
def _get_reader(self) -> FileFormat:
"""
Get the reader for the current file.
For local files, this also observes the stored settings and the reader
combo, as follows:
1. If the file format is known (from stored settings), use it and set
the reader combo to the corresponding index (as in settings)
2. Otherwise, detect it from the extension and set the combo to
Auto detect, overriding any previous user-set choice
3. Otherwise, use the current combo state.
Returns:
FileFormat: reader instance
"""
if self.source == self.LOCAL_FILE:
path = self.last_path()
self.reader_combo.setEnabled(True)
# pylint: disable=unsubscriptable-object
if self.recent_paths and self.recent_paths[0].file_format:
qname = self.recent_paths[0].file_format
qname_index = {r.qualified_name(): i for i, r in enumerate(self.available_readers)}
if qname in qname_index:
self.reader_combo.setCurrentIndex(qname_index[qname] + 1)
else:
# reader may be accessible, but not in self.available_readers
# (perhaps its code was moved)
self.reader_combo.addItem(qname)
self.reader_combo.setCurrentIndex(len(self.reader_combo) - 1)
try:
reader_class = class_from_qualified_name(qname)
except Exception as ex:
raise MissingReaderException(f'Can not find reader "{qname}"') from ex
reader = reader_class(path)
else:
old_idx = self.reader_combo.currentIndex()
try:
self.reader_combo.setCurrentIndex(0)
reader = FileFormat.get_reader(path)
except MissingReaderException:
if old_idx == 0:
raise
# Set the path for the current file format,
# and repeat the call to return the corresponding reader
self.select_reader(old_idx)
return self._get_reader()
# pylint: disable=unsubscriptable-object
if self.recent_paths and self.recent_paths[0].sheet:
reader.select_sheet(self.recent_paths[0].sheet)
return reader
else:
url = self.url_combo.currentText().strip()
return UrlReader(url)
def _update_sheet_combo(self):
if len(self.reader.sheets) < 2:
self.sheet_box.hide()
self.reader.select_sheet(None)
return
self.sheet_combo.clear()
self.sheet_combo.addItems(self.reader.sheets)
self._select_active_sheet()
self.sheet_box.show()
def _select_active_sheet(self):
try:
idx = self.reader.sheets.index(self.reader.sheet)
self.sheet_combo.setCurrentIndex(idx)
except ValueError:
# Requested sheet does not exist in this file
self.reader.select_sheet(None)
self.sheet_combo.setCurrentIndex(0)
def _initialize_reader_combo(self):
# Reset to initial state without losing the current index or
# emitting any signals.
combo = self.reader_combo
if not combo.count():
filters = [format_filter(f) for f in self.available_readers]
combo.addItems([DEFAULT_READER_TEXT] + filters)
combo.setCurrentIndex(0)
else:
# additional readers may be added in self._get_reader()
n = len(self.available_readers) + 1
if combo.currentIndex() >= n:
combo.setCurrentIndex(0)
while combo.count() > n:
combo.removeItem(combo.count() - 1)
combo.setDisabled(True)
@staticmethod
def _describe(table):
domain = table.domain
text = ""
attrs = getattr(table, "attributes", {})
descs = [attrs[desc]
for desc in ("Name", "Description") if desc in attrs]
if len(descs) == 2:
descs[0] = f"<b>{descs[0]}</b>"
if descs:
text += f"<p>{'<br/>'.join(descs)}</p>"
text += f"<p>{len(table)} {pl(len(table), 'instance')}"
missing_in_attr = missing_in_class = ""
if table.X.size < OWFile.SIZE_LIMIT:
missing_in_attr = missing_values(table.get_nan_frequency_attribute())
missing_in_class = missing_values(table.get_nan_frequency_class())
nattrs = len(domain.attributes)
text += f"<br/>{nattrs} {pl(nattrs, 'feature')} {missing_in_attr}"
if domain.has_continuous_class:
text += f"<br/>Regression; numerical class {missing_in_class}"
elif domain.has_discrete_class:
nvals = len(domain.class_var.values)
text += "<br/>Classification; categorical class " \
f"with {nvals} {pl(nvals, 'value')} {missing_in_class}"
elif table.domain.class_vars:
ntargets = len(table.domain.class_vars)
text += "<br/>Multi-target; " \
f"{ntargets} target {pl(ntargets, 'variable')} " \
f"{missing_in_class}"
else:
text += "<br/>Data has no target variable."
nmetas = len(domain.metas)
text += f"<br/>{nmetas} {pl(nmetas, 'meta attribute')}"
text += "</p>"
if 'Timestamp' in table.domain:
# Google Forms uses this header to timestamp responses
text += f"<p>First entry: {table[0, 'Timestamp']}<br/>" \
f"Last entry: {table[-1, 'Timestamp']}</p>"
return text
def storeSpecificSettings(self):
# pylint: disable=unsubscriptable-object
self.current_context.modified_variables = self.variables[:]
def retrieveSpecificSettings(self):
if hasattr(self.current_context, "modified_variables"):
# pylint: disable=unsubscriptable-object
self.variables[:] = self.current_context.modified_variables
def reset_domain_edit(self):
self.domain_editor.reset_domain()
self.apply_domain_edit()
def _inspect_discrete_variables(self, domain):
for var in chain(domain.variables, domain.metas):
if var.is_discrete and len(var.values) > 100:
self.Warning.performance_warning()
def apply_domain_edit(self):
self.Warning.performance_warning.clear()
self.Warning.renamed_vars.clear()
if self.data is None:
table = None
else:
domain, cols, renamed = \
self.domain_editor.get_domain(self.data.domain, self.data,
deduplicate=True)
if not (domain.variables or domain.metas):
table = None
elif domain is self.data.domain:
table = self.data
else:
X, y, m = cols
table = Table.from_numpy(domain, X, y, m, self.data.W)
table.name = self.data.name
table.ids = np.array(self.data.ids)
table.attributes = getattr(self.data, 'attributes', {})
self._inspect_discrete_variables(domain)
if renamed:
self.Warning.renamed_vars(f"Renamed: {', '.join(renamed)}")
self.Warning.multiple_targets(
shown=table is not None and len(table.domain.class_vars) > 1)
self.Outputs.data.send(table)
self.apply_button.setEnabled(False)
def get_widget_name_extension(self):
_, name = os.path.split(self.loaded_file)
return os.path.splitext(name)[0]
def send_report(self):
def get_ext_name(filename):
try:
return FileFormat.names[os.path.splitext(filename)[1]]
except KeyError:
return "unknown"
if self.data is None:
self.report_paragraph("File", "No file.")
return
if self.source == self.LOCAL_FILE:
home = os.path.expanduser("~")
if self.loaded_file.startswith(home):
# os.path.join does not like ~
name = "~" + os.path.sep + \
self.loaded_file[len(home):].lstrip("/").lstrip("\\")
else:
name = self.loaded_file
if self.sheet_combo.isVisible():
name += f" ({self.sheet_combo.currentText()})"
self.report_items("File", [("File name", name),
("Format", get_ext_name(name))])
else:
self.report_items("Data", [("Resource", self.url),
("Format", get_ext_name(self.url))])
self.report_data("Data", self.data)
def canDropUrl(self, url: QUrl) -> bool:
return OWFileDropHandler().canDropUrl(url)
def handleDroppedUrl(self, url: QUrl) -> None:
if url.isLocalFile():
self.add_path(url.toLocalFile()) # add first file
self.source = self.LOCAL_FILE
self.load_data()
else:
self.url_combo.insertItem(0, url.toString())
self.url_combo.setCurrentIndex(0)
self._url_set()
def workflowEnvChanged(self, key, value, oldvalue):
"""
Function called when environment changes (e.g. while saving the scheme)
It make sure that all environment connected values are modified
(e.g. relative file paths are changed)
"""
self.update_file_list(key, value, oldvalue)
class OWFileDropHandler(SingleUrlDropHandler):
WIDGET = OWFile
def canDropUrl(self, url: QUrl) -> bool:
if url.isLocalFile():
try:
FileFormat.get_reader(url.toLocalFile())
return True
except Exception: # noqa # pylint:disable=broad-except
return False
else:
return url.scheme().lower() in ("http", "https", "ftp")
def parametersFromUrl(self, url: QUrl) -> Dict[str, Any]:
if url.isLocalFile():
path = url.toLocalFile()
r = RecentPath(os.path.abspath(path), None, None,
os.path.basename(path))
return {
"recent_paths": stored_recent_paths_prepend(self.WIDGET, r),
"source": OWFile.LOCAL_FILE,
}
else:
return {
"recent_urls": [url.toString()],
"source": OWFile.URL,
}
if __name__ == "__main__": # pragma: no cover
WidgetPreview(OWFile).run()
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