File: test_owcsvimport.py

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# pylint: disable=protected-access,invalid-name,arguments-differ
import tempfile
import unittest
from unittest import mock
from contextlib import ExitStack, contextmanager

import os
import io
import csv
import json
from typing import Type, TypeVar, Optional

import numpy as np
import pandas as pd
from numpy.testing import assert_array_equal

from AnyQt.QtCore import QSettings, Qt, QUrl
from AnyQt.QtGui import QIcon
from AnyQt.QtWidgets import QFileDialog
from AnyQt.QtTest import QSignalSpy

from orangewidget.tests.utils import simulate
from orangewidget.widget import OWBaseWidget

from Orange.data import DiscreteVariable, TimeVariable, ContinuousVariable, \
    StringVariable
from Orange.tests import named_file
from Orange.widgets.tests.base import WidgetTest, GuiTest
from Orange.widgets.data import owcsvimport
from Orange.widgets.data.owcsvimport import (
    OWCSVFileImport, pandas_to_table, ColumnType, RowSpec, ImportItem,
)
from Orange.widgets.utils.pathutils import PathItem, samepath
from Orange.widgets.utils.settings import QSettings_writeArray

W = TypeVar("W", bound=OWBaseWidget)


class TestOWCSVFileImport(WidgetTest):
    def create_widget(
            self, cls: Type[W], stored_settings: Optional[dict] = None,
            reset_default_settings=True, **kwargs) -> W:
        if reset_default_settings:
            self.reset_default_settings(cls)
        widget = cls.__new__(cls, signal_manager=self.signal_manager,
                             stored_settings=stored_settings, **kwargs)
        widget.__init__()

        def delete():
            widget.onDeleteWidget()
            widget.close()
            widget.deleteLater()

        self._stack.callback(delete)
        return widget

    def setUp(self):
        super().setUp()
        self._stack = ExitStack().__enter__()
        # patch `_local_settings` to avoid side effects, across tests
        fname = self._stack.enter_context(named_file(""))
        s = QSettings(fname, QSettings.IniFormat)
        self._stack.enter_context(mock.patch.object(
            owcsvimport.OWCSVFileImport, "_local_settings", lambda *a: s
        ))
        self.widget = self.create_widget(owcsvimport.OWCSVFileImport)

    def tearDown(self):
        del self.widget
        self._stack.close()
        super().tearDown()

    def test_basic(self):
        w = self.widget
        w.activate_recent(0)
        w.cancel()

    data_regions_options = owcsvimport.Options(
        encoding="ascii", dialect=csv.excel_tab(),
        columntypes=[
            (range(0, 1), ColumnType.Categorical),
            (range(1, 2), ColumnType.Text),
            (range(2, 3), ColumnType.Categorical),
        ], rowspec=[
            (range(0, 1), RowSpec.Header),
            (range(1, 3), RowSpec.Skipped),
        ],
    )
    data_regions_path = os.path.join(
        os.path.dirname(__file__), "data-regions.tab")

    def _check_data_regions(self, table):
        self.assertEqual(len(table), 3)
        self.assertEqual(len(table), 3)
        self.assertTrue(table.domain["id"].is_discrete)
        self.assertTrue(table.domain["continent"].is_discrete)
        self.assertTrue(table.domain["state"].is_string)
        assert_array_equal(table.X, [[0, 1], [1, 1], [2, 0]])
        assert_array_equal(table.metas,
                           np.array([["UK"], ["Russia"], ["Mexico"]], object))

    def test_restore(self):
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "data-regions.tab")

        w = self.create_widget(
            owcsvimport.OWCSVFileImport,
            stored_settings={
                "_session_items": [
                    (path, self.data_regions_options.as_dict())
                ]
            }
        )
        item = w.current_item()
        self.assertTrue(samepath(item.path(), path))
        self.assertEqual(item.options(), self.data_regions_options)
        out = self.get_output(w.Outputs.data)
        self._check_data_regions(out)
        self.assertEqual(out.name, "data-regions")

    def test_restore_from_local(self):
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "data-regions.tab")
        s = owcsvimport.OWCSVFileImport._local_settings()
        s.clear()
        QSettings_writeArray(
            s, "recent", [
                {"path": path,
                 "options": json.dumps(self.data_regions_options.as_dict())}]
        )
        w = self.create_widget(
            owcsvimport.OWCSVFileImport,
        )
        item = w.current_item()
        self.assertIsNone(item)
        simulate.combobox_activate_index(w.recent_combo, 0)
        item = w.current_item()
        self.assertTrue(samepath(item.path(), path))
        self.assertEqual(item.options(), self.data_regions_options)
        data = w.settingsHandler.pack_data(w)
        self.assertEqual(
            data['_session_items_v2'], [
                (PathItem.AbsPath(path).as_dict(),
                 self.data_regions_options.as_dict())
            ],
            "local settings item must be recorded in _session_items_v2 when "
            "activated",
        )
        self._check_data_regions(self.get_output(w.Outputs.data))

    data_csv_types_options = owcsvimport.Options(
        encoding="ascii", dialect=csv.excel_tab(),
        columntypes=[
            (range(0, 5), ColumnType.Auto),
        ]
    )

    def test_type_guessing(self):
        """ Check if correct column type is guessed when column type auto """
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "data-csv-types.tab")
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport,
            stored_settings={
                "_session_items": [
                    (path, self.data_csv_types_options.as_dict())
                ],
                "__version__": 2  # guessing works for versions >= 2
            }
        )
        widget.commit()
        self.wait_until_finished(widget)
        output = self.get_output(widget.Outputs.data)
        domain = output.domain

        self.assertIsInstance(domain["time"], TimeVariable)
        self.assertIsInstance(domain["discrete1"], DiscreteVariable)
        self.assertIsInstance(domain["discrete2"], DiscreteVariable)
        self.assertIsInstance(domain["numeric1"], ContinuousVariable)
        self.assertIsInstance(domain["numeric2"], ContinuousVariable)
        self.assertIsInstance(domain["string"], StringVariable)

    def test_discrete_values_sort(self):
        """ Values in the discrete variable should be naturally sorted """
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "data-csv-types.tab")
        options = owcsvimport.Options(
            encoding="ascii", dialect=csv.excel_tab(),
            columntypes=[
                (range(0, 1), ColumnType.Auto),
                (range(1, 2), ColumnType.Categorical),
                (range(2, 5), ColumnType.Auto)
            ]
        )
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport,
            stored_settings={
                "_session_items": [
                    (path, options.as_dict())
                ],
                "__version__": 2  # guessing works for versions >= 2
            }
        )
        widget.commit()
        self.wait_until_finished(widget)
        output = self.get_output(widget.Outputs.data)
        self.assertTupleEqual(('1', '3', '4', '5', '12'), output.domain.attributes[1].values)

    def test_backward_compatibility(self):
        """
        Check that widget have old behaviour on workflows with version < 2
        """
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "data-csv-types.tab")
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport,
            stored_settings={
                "_session_items": [
                    (path, self.data_csv_types_options.as_dict())
                ],
                "__version__": 1  # guessing works for versions >= 2
            }
        )
        widget.commit()
        self.wait_until_finished(widget)
        output = self.get_output(widget.Outputs.data)
        domain = output.domain

        self.assertIsInstance(domain["time"], StringVariable)
        self.assertIsInstance(domain["discrete1"], ContinuousVariable)
        self.assertIsInstance(domain["discrete2"], StringVariable)
        self.assertIsInstance(domain["numeric1"], ContinuousVariable)
        self.assertIsInstance(domain["numeric2"], ContinuousVariable)
        self.assertIsInstance(domain["string"], StringVariable)

    @staticmethod
    @contextmanager
    def _browse_setup(widget: OWCSVFileImport, path: str):
        browse_dialog = widget._browse_dialog
        with mock.patch.object(widget, "_browse_dialog") as r:
            dlg = browse_dialog()
            dlg.setOption(QFileDialog.DontUseNativeDialog)
            dlg.selectFile(path)
            dlg.exec = lambda: QFileDialog.Accepted
            r.return_value = dlg
            with mock.patch.object(owcsvimport.CSVImportDialog, "exec",
                                   lambda _: QFileDialog.Accepted):
                yield

    def test_browse(self):
        widget = self.widget
        path = self.data_regions_path
        with self._browse_setup(widget, path):
            widget.browse()
        cur = widget.current_item()
        self.assertIsNotNone(cur)
        self.assertTrue(samepath(cur.path(), path))

    def test_browse_prefix(self):
        widget = self.widget
        path = self.data_regions_path
        with self._browse_setup(widget, path):
            basedir = os.path.dirname(__file__)
            widget.workflowEnv = lambda: {"basedir": basedir}
            widget.workflowEnvChanged("basedir", basedir, "")
            widget.browse_relative(prefixname="basedir")

        cur = widget.current_item()
        self.assertIsNotNone(cur)
        self.assertTrue(samepath(cur.path(), path))
        self.assertIsInstance(cur.varPath(), PathItem.VarPath)

    def test_browse_prefix_parent(self):
        widget = self.widget
        path = self.data_regions_path

        with self._browse_setup(widget, path):
            basedir = os.path.join(os.path.dirname(__file__), "bs")
            widget.workflowEnv = lambda: {"basedir": basedir}
            widget.workflowEnvChanged("basedir", basedir, "")
            mb = widget._path_must_be_relative_mb = mock.Mock()
            widget.browse_relative(prefixname="basedir")
            mb.assert_called()
        self.assertIsNone(widget.current_item())

    @staticmethod
    @contextmanager
    def activate_recent_and_get_dialog(
            widget: OWCSVFileImport, recent_index: int = 0
    ) -> QFileDialog:
        """
        Activate the recent item (which MUST be missing on FS) and
        yield the QFileDialog which is shown.
        """
        browse_dialog = widget._browse_dialog
        with mock.patch.object(widget, "_browse_dialog") as r:
            dlg = browse_dialog()
            # segfaults in tests when using 'sheet' dialog on macos when parent
            # is destroyed (before the dialog fully hides - animation)?
            dlg.setParent(None)
            # calling selectFile when using native (macOS) dialog does not have
            # an effect - at least not immediately;
            dlg.setOption(QFileDialog.DontUseNativeDialog)
            r.return_value = dlg
            with mock.patch.object(dlg, "open") as r:
                widget.activate_recent(recent_index)
                r.assert_called()
        try:
            yield dlg
        finally:
            dlg.deleteLater()
        return

    def test_browse_for_missing(self):
        missing = os.path.dirname(__file__) + "/this file does not exist.csv"
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport, stored_settings={
                "_session_items": [
                    (missing, self.data_regions_options.as_dict())
                ]
            }
        )
        with self.activate_recent_and_get_dialog(widget) as dlg:
            dlg.selectFile(self.data_regions_path)
            dlg.accept()
            cur = widget.current_item()
            self.assertTrue(samepath(self.data_regions_path, cur.path()))
            self.assertEqual(
                self.data_regions_options.as_dict(), cur.options().as_dict()
            )

    def test_browse_for_missing_prefixed(self):
        path = self.data_regions_path
        basedir = os.path.dirname(path)
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport, stored_settings={
                "__version__": 3,
                "_session_items_v2": [
                    (PathItem.VarPath("basedir", "this file does not exist.csv").as_dict(),
                     self.data_regions_options.as_dict())]
            },
            env={"basedir": basedir}
        )
        with self.activate_recent_and_get_dialog(widget) as dlg:
            dlg.selectFile(path)
            dlg.accept()
            cur = widget.current_item()
            self.assertTrue(samepath(path, cur.path()))
            self.assertEqual(
                cur.varPath(), PathItem.VarPath("basedir", "data-regions.tab"))
            self.assertEqual(
                self.data_regions_options.as_dict(), cur.options().as_dict()
            )

    def test_browse_for_missing_prefixed_parent(self):
        path = self.data_regions_path
        basedir = os.path.join(os.path.dirname(path), "origin1")
        item = (PathItem.VarPath("basedir",
                                 "this file does not exist.csv"),
                self.data_regions_options)
        widget = self.create_widget(
            owcsvimport.OWCSVFileImport, stored_settings={
                "__version__": 3,
                "_session_items_v2": [(item[0].as_dict(), item[1].as_dict())]
            },
            env={"basedir": basedir}
        )
        mb = widget._path_must_be_relative_mb = mock.Mock()
        with self.activate_recent_and_get_dialog(widget) as dlg:
            dlg.selectFile(path)
            dlg.accept()
            mb.assert_called()
            cur = widget.current_item()
            self.assertEqual(item[0], cur.varPath())
            self.assertEqual(item[1].as_dict(), cur.options().as_dict())

    def test_activate_import_dialog(self):
        path = self.data_regions_path
        item = ImportItem.fromPath(path)
        self.widget.import_items_model.appendRow(ImportItem.fromPath(path))
        opts = item.options()
        self.assertIsNone(opts)
        with mock.patch.object(owcsvimport.CSVImportDialog, "show"):
            self.widget.import_options_button.click()
            dlg = self.widget.findChild(owcsvimport.CSVImportDialog)
            dlg.accept()
        item_ = self.widget.current_item()
        self.assertEqual(item.path(), item_.path())
        self.assertIsNotNone(item_.options())

    def test_drop_file(self):
        self.assertFalse(self.widget.canDropUrl(QUrl("https://aa-bb.com")))
        url = QUrl.fromLocalFile(self.data_regions_path)
        self.assertTrue(self.widget.canDropUrl(url))

        with mock.patch.object(owcsvimport.CSVImportDialog, "show"):
            self.widget.handleDroppedUrl(url)
            dlg = self.widget.findChild(owcsvimport.CSVImportDialog)
            dlg.reject()
        item = self.widget.current_item()
        self.assertIsNone(item, "Rejecting the dialog should not record the recent file")

        with mock.patch.object(owcsvimport.CSVImportDialog, "show"):
            self.widget.handleDroppedUrl(url)
            dlg = self.widget.findChild(owcsvimport.CSVImportDialog)
            dlg.accept()
        item = self.widget.current_item()
        self.assertEqual(item.path(), url.toLocalFile())
        out = self.get_output(self.widget.Outputs.data)
        self.assertEqual(len(out.domain), 3)

    def test_long_data(self):
        with tempfile.TemporaryDirectory() as tmp:
            path = os.path.join(tmp, "test.csv")
            nums = np.tile([-3, -2, -1, 0, 1, 2], 100000)
            pd.DataFrame(
                {"A": np.hstack((nums, ["ABC"], nums))}
            ).to_csv(path, index=False)

            with self._browse_setup(self.widget, path):
                self.widget.browse()
            out = self.get_output(self.widget.Outputs.data)
            self.assertIsInstance(out.domain.attributes[0], DiscreteVariable)
            self.assertTupleEqual((6 * 100000 * 2 + 1, 1), out.X.shape)


class TestImportDialog(GuiTest):
    @staticmethod
    def test_dialog():
        dirname = os.path.dirname(__file__)
        path = os.path.join(dirname, "grep_file.txt")
        d = owcsvimport.CSVImportDialog()
        d.setPath(path)
        opts = owcsvimport.Options(
            encoding="utf-8",
            dialect=owcsvimport.textimport.Dialect(
                " ", "\"", "\\", True, True
            ),
            columntypes=[
                (range(0, 2), ColumnType.Numeric),
                (range(2, 3), ColumnType.Categorical)
            ],
            rowspec=[
                (range(0, 4), RowSpec.Skipped),
                (range(4, 5), RowSpec.Header),
                (range(8, 13), RowSpec.Skipped),
            ]
        )
        d.setOptions(opts)
        d.restoreDefaults()
        opts1 = d.options()
        d.reset()
        opts1 = d.options()


class TestModel(GuiTest):
    def test_model(self):
        path = TestOWCSVFileImport.data_regions_path
        model = owcsvimport.VarPathItemModel()
        model.setItemPrototype(owcsvimport.ImportItem())
        it1 = owcsvimport.ImportItem()
        it1.setVarPath(PathItem.VarPath("prefix", "data-regions.tab"))
        it2 = owcsvimport.ImportItem()
        it2.setVarPath(PathItem.AbsPath(path))
        model.appendRow([it1])
        model.appendRow([it2])

        def data(row, role):
            return model.data(model.index(row, 0), role)

        self.assertIsInstance(data(0, Qt.DecorationRole), QIcon)
        self.assertIsInstance(data(1, Qt.DecorationRole), QIcon)

        self.assertEqual(data(0, Qt.DisplayRole), "data-regions.tab")
        self.assertEqual(data(1, Qt.DisplayRole), "data-regions.tab")

        self.assertEqual(data(0, Qt.ToolTipRole), "${prefix}/data-regions.tab (missing)")
        self.assertTrue(samepath(data(1, Qt.ToolTipRole), path))

        self.assertIsNotNone(data(0, Qt.ForegroundRole))
        self.assertIsNone(data(1, Qt.ForegroundRole))
        spy = QSignalSpy(model.dataChanged)
        model.setReplacementEnv({"prefix": os.path.dirname(path)})
        self.assertSequenceEqual(
            [[model.index(0, 0), model.index(1, 0), []]],
            list(spy)
        )
        self.assertEqual(data(0, Qt.ToolTipRole), "${prefix}/data-regions.tab")
        self.assertIsNone(data(0, Qt.ForegroundRole))


class TestUtils(unittest.TestCase):
    def test_load_csv(self):
        contents = (
            b'1/1/1990,1.0,[,one,\n'
            b'1/1/1990,2.0,],two,\n'
            b'1/1/1990,3.0,{,three,'
        )
        opts = owcsvimport.Options(
            encoding="ascii",
            dialect=csv.excel(),
            columntypes=[
                (range(0, 1), ColumnType.Time),
                (range(1, 2), ColumnType.Numeric),
                (range(2, 3), ColumnType.Text),
                (range(3, 4), ColumnType.Categorical),
                (range(4, 5), ColumnType.Auto),
            ],
            rowspec=[]
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        self.assertEqual(df.shape, (3, 5))
        resolution = "ns" if pd.__version__ < "3.0" else "s"
        self.assertSequenceEqual(
            list(df.dtypes),
            [np.dtype(f"M8[{resolution}]"), np.dtype(float), np.dtype(object),
             "category", np.dtype(float)],
        )
        opts = owcsvimport.Options(
            encoding="ascii",
            dialect=csv.excel(),
            columntypes=[
                (range(0, 1), ColumnType.Skip),
                (range(1, 2), ColumnType.Numeric),
                (range(2, 3), ColumnType.Skip),
                (range(3, 4), ColumnType.Categorical),
                (range(4, 5), ColumnType.Skip),
            ],
            rowspec=[
                (range(1, 2), RowSpec.Skipped)
            ]
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        self.assertEqual(df.shape, (2, 2))
        self.assertSequenceEqual(
            list(df.dtypes), [np.dtype(float), "category"]
        )
        self.assertSequenceEqual(
            list(df.iloc[:, 0]), [1.0, 3.0]
        )
        self.assertSequenceEqual(
            list(df.iloc[:, 1]), ["one", "three"]
        )

    @staticmethod
    def test_convert():
        contents = (
            b'I, J,  K\n'
            b' , A,   \n'
            b'B,  ,  1\n'
            b'?, ., NA'
        )

        class dialect(csv.excel):
            skipinitialspace = True

        opts = owcsvimport.Options(
            encoding="ascii",
            dialect=dialect(),
            columntypes=[
                (range(0, 1), ColumnType.Text),
                (range(1, 2), ColumnType.Categorical),
                (range(2, 3), ColumnType.Text),

            ],
            rowspec=[(range(0, 1), RowSpec.Header)]
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        tb = pandas_to_table(df)

        assert_array_equal(tb.metas[:, 0], ["", "B", "?"])
        assert_array_equal(tb.metas[:, 1], ["", "1", "NA"])
        assert_array_equal(tb.X[:, 0], [0.0, np.nan, np.nan])

        opts = owcsvimport.Options(
            encoding="ascii",
            dialect=dialect(),
            columntypes=[
                (range(0, 1), ColumnType.Categorical),
                (range(1, 2), ColumnType.Categorical),
                (range(2, 3), ColumnType.Numeric),
            ],
            rowspec=[(range(0, 1), RowSpec.Header)]
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        tb = pandas_to_table(df)

        assert_array_equal(tb.X[:, 0], [np.nan, 0, np.nan])
        assert_array_equal(tb.X[:, 1], [0, np.nan, np.nan])
        assert_array_equal(tb.X[:, 2], [np.nan, 1, np.nan])

    def test_decimal_format(self):
        class Dialect(csv.excel):
            delimiter = ";"

        contents = b'3,21;3,37\n4,13;1.000,142'
        opts = owcsvimport.Options(
            encoding="ascii",
            dialect=Dialect(),
            decimal_separator=",",
            group_separator=".",
            columntypes=[
                (range(0, 2), ColumnType.Numeric),
            ],
            rowspec=[],
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        assert_array_equal(df.values, np.array([[3.21, 3.37], [4.13, 1000.142]]))

    def test_tz_local(self):
        contents = (
            b'1970-01-01T00:00:00Z\n'
            b'1970-01-01T00:00:00+0100\n'
            b'1999-12-31T00:00:00Z'
        )
        opts = owcsvimport.Options(
            encoding="ascii",
            columntypes=[
                (range(0, 1), ColumnType.Time),
            ],
            rowspec=[]
        )
        df = owcsvimport.load_csv(io.BytesIO(contents), opts)
        tb = pandas_to_table(df)
        self.assertEqual(tb.X[0, 0], 0.0)
        self.assertEqual(tb.X[1, 0], -3600.0)

    def test_open_compressed(self):
        content = 'abc'
        for ext in ["txt", "gz", "bz2", "xz", "zip"]:
            with named_file('', suffix=f".{ext}") as fname:
                with _open_write(fname, "wt", encoding="ascii") as f:
                    f.write(content)
                f.close()

                with owcsvimport._open(fname, "rt", encoding="ascii") as f:
                    self.assertEqual(content, f.read())

    def test_sniff_csv(self):
        f = io.StringIO("A|B|C\n1|2|3\n1|2|3")
        dialect, header = owcsvimport.sniff_csv(f)
        self.assertEqual(dialect.delimiter, "|")
        self.assertTrue(header)
        with self.assertRaises(csv.Error):
            owcsvimport.sniff_csv(f, delimiters=["."])


def _open_write(path, mode, encoding=None):
    # pylint: disable=import-outside-toplevel
    if mode not in {'w', 'wb', 'wt'}:
        raise ValueError('r')
    _, ext = os.path.splitext(path)
    ext = ext.lower()
    if ext == ".gz":
        import gzip
        return gzip.open(path, mode, encoding=encoding)
    elif ext == ".bz2":
        import bz2
        return bz2.open(path, mode, encoding=encoding)
    elif ext == ".xz":
        import lzma
        return lzma.open(path, mode, encoding=encoding)
    elif ext == ".zip":
        import zipfile
        arh = zipfile.ZipFile(path, 'w')
        filename, _ = os.path.splitext(os.path.basename(path))
        f = arh.open(filename, mode="w")
        f_close = f.close
        # patch the f.close to also close the main archive file

        def close_():
            f_close()
            arh.close()
        f.close = close_
        if 't' in mode:
            f = io.TextIOWrapper(f, encoding=encoding)
        return f
    else:
        return open(path, mode, encoding=encoding)


if __name__ == "__main__":
    unittest.main()