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from itertools import chain
from copy import deepcopy
import numpy as np
import scipy.sparse as sp
from AnyQt.QtCore import Qt, QAbstractTableModel
from AnyQt.QtGui import QColor, QFont
from AnyQt.QtWidgets import QComboBox, QTableView, QSizePolicy
from Orange.data import DiscreteVariable, ContinuousVariable, StringVariable, \
TimeVariable, Domain
from Orange.misc.collections import natural_sorted
from Orange.data.util import get_unique_names_duplicates
from Orange.statistics.util import unique
from Orange.widgets import gui
from Orange.widgets.gui import HorizontalGridDelegate
from Orange.widgets.settings import ContextSetting
from Orange.widgets.utils.itemmodels import TableModel
class Column:
name = 0
tpe = 1
place = 2
values = 3
not_valid = 4
class Place:
feature = 0
class_var = 1
meta = 2
skip = 3
class VarTableModel(QAbstractTableModel):
DISCRETE_VALUE_DISPLAY_LIMIT = 20
places = "feature", "target", "meta", "skip"
typenames = "categorical", "numeric", "text", "datetime"
vartypes = DiscreteVariable, ContinuousVariable, StringVariable, TimeVariable
name2type = dict(zip(typenames, vartypes))
type2name = dict(zip(vartypes, typenames))
def __init__(self, variables, *args):
super().__init__(*args)
self.variables = variables
self.orig_variables = None
self.set_orig_variables(variables)
def set_orig_variables(self, variables):
self.orig_variables = deepcopy(variables)
def reset_variables(self):
self.set_variables(deepcopy(self.orig_variables))
def set_variables(self, variables):
self.modelAboutToBeReset.emit()
self.variables = variables
self.modelReset.emit()
def rowCount(self, parent):
return 0 if parent.isValid() else len(self.variables)
@staticmethod
def columnCount(parent):
return 0 if parent.isValid() else Column.not_valid
def data(self, index, role):
row, col = index.row(), index.column()
val = self.variables[row][col]
if role in (Qt.DisplayRole, Qt.EditRole):
if col == Column.tpe:
return self.type2name[val]
if col == Column.place:
return self.places[val]
else:
return val
if role == Qt.DecorationRole:
if col == Column.tpe:
return gui.attributeIconDict[self.vartypes.index(val) + 1]
if role == Qt.ForegroundRole:
if self.variables[row][Column.place] == Place.skip and col != Column.place:
return QColor(160, 160, 160)
# The background is light-ish, force dark text color - same as data table
return self.data(index, Qt.BackgroundRole) and QColor(0, 0, 0, 200)
if role == Qt.BackgroundRole:
place = self.variables[row][Column.place]
mapping = [Place.meta, Place.feature, Place.class_var, None]
return TableModel.ColorForRole.get(mapping[place], None)
if role == Qt.FontRole:
if self.variables[row] != self.orig_variables[row]:
font = QFont()
font.setBold(True)
return font
return None
def setData(self, index, value, role=Qt.EditRole):
row, col = index.row(), index.column()
row_data = self.variables[row]
if role == Qt.EditRole:
if col == Column.name and not (value.isspace() or value == ""):
row_data[col] = value
elif col == Column.tpe:
vartype = self.name2type[value]
row_data[col] = vartype
if not vartype.is_primitive() and \
row_data[Column.place] < Place.meta:
row_data[Column.place] = Place.meta
elif col == Column.place:
row_data[col] = self.places.index(value)
else:
return False
# Settings may change background colors
self.dataChanged.emit(index.sibling(row, 0), index.sibling(row, 3))
return True
return False
def headerData(self, i, orientation, role=Qt.DisplayRole):
if orientation == Qt.Horizontal and role == Qt.DisplayRole and i < 4:
return ("Name", "Type", "Role", "Values")[i]
if role == Qt.TextAlignmentRole:
return Qt.AlignLeft
return super().headerData(i, orientation, role)
def flags(self, index):
if index.column() == Column.values:
return super().flags(index)
return super().flags(index) | Qt.ItemIsEditable
class ComboDelegate(HorizontalGridDelegate):
def __init__(self, view, items):
super().__init__()
self.view = view
self.items = items
def createEditor(self, parent, _option, index):
# This ugly hack closes the combo when the user selects an item
class Combo(QComboBox):
def __init__(self, *args):
super().__init__(*args)
self.popup_shown = False
self.highlighted_text = None
def highlight(self, index):
self.highlighted_text = index
def showPopup(self, *args):
super().showPopup(*args)
self.popup_shown = True
# Here, we need `self` from the closure
# pylint: disable=no-self-argument,attribute-defined-outside-init
def hidePopup(me):
if me.popup_shown:
self.view.model().setData(
index, me.highlighted_text, Qt.EditRole)
self.popup_shown = False
super().hidePopup()
self.view.closeEditor(me, self.NoHint)
combo = Combo(parent)
combo.textHighlighted.connect(combo.highlight)
return combo
class VarTypeDelegate(ComboDelegate):
def setEditorData(self, combo, index):
combo.clear()
no_numeric = not self.view.model().variables[
index.row()][Column.not_valid]
if no_numeric:
# Do not allow selection of numeric and datetime
items = [i for i in self.items if i not in ("numeric", "datetime")]
else:
items = self.items
ind = items.index(index.data())
combo.addItems(items)
combo.setCurrentIndex(ind)
combo.showPopup()
class PlaceDelegate(ComboDelegate):
def setEditorData(self, combo, index):
combo.clear()
to_meta = not self.view.model().variables[
index.row()][Column.tpe].is_primitive()
combo.addItems(self.items[2 * to_meta:])
combo.setCurrentIndex(self.items.index(index.data()) - 2 * to_meta)
combo.showPopup()
class DomainEditor(QTableView):
"""Component for editing of variable types.
Parameters
----------
widget : parent widget
"""
variables = ContextSetting([])
def __init__(self, widget):
super().__init__()
widget.settingsHandler.initialize(self)
widget.contextAboutToBeOpened.connect(lambda args: self.set_domain(args[0]))
widget.contextOpened.connect(lambda: self.model().set_variables(self.variables))
widget.contextClosed.connect(lambda: self.model().set_variables([]))
self.setModel(VarTableModel(self.variables, self))
self.setSelectionMode(QTableView.NoSelection)
self.horizontalHeader().setStretchLastSection(True)
self.setShowGrid(False)
self.setEditTriggers(
QTableView.SelectedClicked | QTableView.DoubleClicked)
self.setSizePolicy(
QSizePolicy.MinimumExpanding, QSizePolicy.MinimumExpanding)
# setItemDelegate(ForColumn) apparently does not take ownership
# of delegates, and coredumps if a a references is not stored somewhere.
# We thus store delegates as attributes
self.grid_delegate = HorizontalGridDelegate()
self.setItemDelegate(self.grid_delegate)
self.vartype_delegate = VarTypeDelegate(self, VarTableModel.typenames)
self.setItemDelegateForColumn(Column.tpe, self.vartype_delegate)
self.place_delegate = PlaceDelegate(self, VarTableModel.places)
self.setItemDelegateForColumn(Column.place, self.place_delegate)
@staticmethod
def _is_missing(x):
return str(x) in ("nan", "")
@staticmethod
def _iter_vals(x):
"""Iterate over values of sparse or dense arrays."""
for i in range(x.shape[0]):
yield x[i, 0]
@staticmethod
def _to_column(x, to_sparse, dtype=None):
"""Transform list of values to sparse/dense column array."""
x = np.asarray(x, dtype=dtype).reshape(-1, 1)
if to_sparse:
x = sp.csc_matrix(x)
return x
@staticmethod
def _merge(cols, force_dense=False):
if len(cols) == 0:
return None
all_dense = not any(sp.issparse(c) for c in cols)
if all_dense:
return np.hstack(cols)
if force_dense:
return np.hstack([c.toarray() if sp.issparse(c) else c for c in cols])
sparse_cols = [c if sp.issparse(c) else sp.csc_matrix(c) for c in cols]
return sp.hstack(sparse_cols).tocsr()
def get_domain(self, domain, data, deduplicate=False):
"""
Create domain (and dataset) from changes made in the widget.
Returns
-------
Args:
domain (Domain): original domain
data (Table): original data
deduplicate (bool): if True, variable names are deduplicated and
the result contains an additional list with names of renamed
variables
Returns:
(new_domain, [attribute_columns, class_var_columns, meta_columns])
or
(new_domain, [attribute_columns, class_var_columns, meta_columns], renamed)
"""
# Allow type-checking with type() instead of isinstance() for exact comparison
# pylint: disable=unidiomatic-typecheck
variables = self.model().variables
places = [[], [], []] # attributes, class_vars, metas
cols = [[], [], []] # Xcols, Ycols, Mcols
def numbers_are_round(var, col_data):
if type(var) == ContinuousVariable:
data = np.asarray(col_data.data) # Works for dense and sparse
data = data[~np.isnan(data)]
return (data == data.astype(int)).all()
return False
# Exit early with original domain if the user didn't actually change anything
if all((name == orig_var.name and tpe == type(orig_var) and place == orig_plc)
for (name, tpe, place, _, _), (orig_var, orig_plc) in
zip(variables,
chain(((at, Place.feature) for at in domain.attributes),
((cl, Place.class_var) for cl in domain.class_vars),
((mt, Place.meta) for mt in domain.metas)))):
if deduplicate:
return domain, [data.X, data.Y, data.metas], []
else:
return domain, [data.X, data.Y, data.metas]
relevant_names = [var[0] for var in variables if var[2] != Place.skip]
if deduplicate:
renamed_iter = iter(get_unique_names_duplicates(relevant_names))
else:
renamed_iter = iter(relevant_names)
renamed = []
for (name, tpe, place, _, may_be_numeric), (orig_var, orig_plc) in \
zip(variables,
chain([(at, Place.feature) for at in domain.attributes],
[(cl, Place.class_var) for cl in domain.class_vars],
[(mt, Place.meta) for mt in domain.metas])):
if place == Place.skip:
continue
new_name = next(renamed_iter)
if new_name != name and name not in renamed:
renamed.append(name)
col_data = self._get_column(data, orig_var, orig_plc)
is_sparse = sp.issparse(col_data)
if new_name == orig_var.name and tpe == type(orig_var):
var = orig_var
elif tpe == type(orig_var):
var = orig_var.copy(name=new_name)
elif tpe == DiscreteVariable:
values = natural_sorted(
list(str(i) for i in unique(col_data)
if not self._is_missing(i))
)
round_numbers = numbers_are_round(orig_var, col_data)
col_data = [np.nan if self._is_missing(x) else values.index(str(x))
for x in self._iter_vals(col_data)]
if round_numbers:
values = [str(int(float(v))) for v in values]
var = tpe(new_name, values)
col_data = self._to_column(col_data, is_sparse)
elif tpe == StringVariable:
var = tpe.make(new_name)
if type(orig_var) in [DiscreteVariable, TimeVariable]:
col_data = [orig_var.repr_val(x) if not np.isnan(x) else ""
for x in self._iter_vals(col_data)]
elif type(orig_var) == ContinuousVariable:
round_numbers = numbers_are_round(orig_var, col_data)
col_data = ['' if np.isnan(x) else
str(int(x)) if round_numbers else
orig_var.repr_val(x)
for x in self._iter_vals(col_data)]
# don't obey sparsity for StringVariable since they are
# in metas which are transformed to dense below
col_data = self._to_column(col_data, False, dtype=object)
elif tpe == ContinuousVariable and type(orig_var) == DiscreteVariable:
var = tpe.make(new_name)
if may_be_numeric:
col_data = [np.nan if self._is_missing(x) else float(orig_var.values[int(x)])
for x in self._iter_vals(col_data)]
col_data = self._to_column(col_data, is_sparse)
else:
var = tpe(new_name)
places[place].append(var)
cols[place].append(col_data)
# merge columns for X, Y and metas
feats = cols[Place.feature]
X = self._merge(feats) if feats else np.empty((len(data), 0))
Y = self._merge(cols[Place.class_var], force_dense=True)
m = self._merge(cols[Place.meta], force_dense=True)
domain = Domain(*places)
if deduplicate:
return domain, [X, Y, m], renamed
else:
return domain, [X, Y, m]
@staticmethod
def _get_column(data, source_var, source_place):
""" Extract column from data and preserve sparsity. """
if source_place == Place.meta:
col_data = data[:, source_var].metas
elif source_place == Place.class_var:
col_data = data[:, source_var].Y.reshape(-1, 1)
else:
col_data = data[:, source_var].X
return col_data
def set_domain(self, domain):
self.variables = self.parse_domain(domain)
self.model().set_orig_variables(self.variables)
def reset_domain(self):
self.model().reset_variables()
self.variables = self.model().variables
def mousePressEvent(self, event):
if event.button() == Qt.LeftButton:
index = self.indexAt(event.pos())
self.edit(index)
event.accept()
else:
super().mousePressEvent(event)
@staticmethod
def parse_domain(domain):
"""Convert domain into variable representation used by
the VarTableModel.
Parameters
----------
domain : the domain to convert
Returns
-------
list of [variable_name, var_type, place, values, can_be_numeric] lists.
"""
if domain is None:
return []
def may_be_numeric(var):
if var.is_continuous:
return True
if var.is_discrete:
try:
sum(float(x) for x in var.values)
return True
except ValueError:
return False
return False
def discrete_value_display(value_list):
result = ", ".join(str(v)
for v in value_list[:VarTableModel.DISCRETE_VALUE_DISPLAY_LIMIT])
if len(value_list) > VarTableModel.DISCRETE_VALUE_DISPLAY_LIMIT:
result += ", ..."
return result
return [
[var.name, type(var), place,
discrete_value_display(var.values) if var.is_discrete else "",
may_be_numeric(var)]
for place, vars in enumerate(
(domain.attributes, domain.class_vars, domain.metas))
for var in vars
]
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