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from typing import List, Optional, Tuple, Union, Dict
from functools import lru_cache
from xml.sax.saxutils import escape
import numpy as np
from AnyQt.QtCore import Qt, QPointF, QSize, Signal, QRectF
from AnyQt.QtGui import QColor
from AnyQt.QtWidgets import QApplication, QToolTip, QGraphicsSceneHelpEvent
import pyqtgraph as pg
from orangewidget.utils.visual_settings_dlg import VisualSettingsDialog, \
KeyType, ValueType
from Orange.data import Table, DiscreteVariable, ContinuousVariable, \
StringVariable, Variable
from Orange.widgets import gui
from Orange.widgets.settings import Setting, ContextSetting, \
DomainContextHandler, SettingProvider
from Orange.widgets.utils.annotated_data import create_annotated_table, \
ANNOTATED_DATA_SIGNAL_NAME
from Orange.widgets.utils import instance_tooltip
from Orange.widgets.utils.itemmodels import DomainModel
from Orange.widgets.utils.plot import OWPlotGUI, SELECT, PANNING, ZOOMING
from Orange.widgets.utils.sql import check_sql_input
from Orange.widgets.visualize.owscatterplotgraph import LegendItem
from Orange.widgets.visualize.utils.customizableplot import Updater, \
CommonParameterSetter
from Orange.widgets.visualize.utils.plotutils import AxisItem, \
HelpEventDelegate, PlotWidget
from Orange.widgets.widget import OWWidget, Input, Output, Msg
MAX_INSTANCES = 200
class BarPlotViewBox(pg.ViewBox):
def __init__(self, parent):
super().__init__()
self.graph = parent
self.setMouseMode(self.RectMode)
def mouseDragEvent(self, ev, axis=None):
if self.graph.state == SELECT and axis is None:
ev.accept()
if ev.button() == Qt.LeftButton:
self.updateScaleBox(ev.buttonDownPos(), ev.pos())
if ev.isFinish():
self.rbScaleBox.hide()
p1, p2 = ev.buttonDownPos(ev.button()), ev.pos()
p1 = self.mapToView(p1)
p2 = self.mapToView(p2)
self.graph.select_by_rectangle(QRectF(p1, p2))
else:
self.updateScaleBox(ev.buttonDownPos(), ev.pos())
elif self.graph.state == ZOOMING or self.graph.state == PANNING:
super().mouseDragEvent(ev, axis=axis)
else:
ev.ignore()
def mouseClickEvent(self, ev):
if ev.button() == Qt.LeftButton:
self.graph.select_by_click(self.mapSceneToView(ev.scenePos()))
ev.accept()
class ParameterSetter(CommonParameterSetter):
GRID_LABEL, SHOW_GRID_LABEL = "Gridlines", "Show"
DEFAULT_ALPHA_GRID, DEFAULT_SHOW_GRID = 80, True
BOTTOM_AXIS_LABEL, GROUP_AXIS_LABEL = "Bottom axis", "Group axis"
IS_VERTICAL_LABEL = "Vertical ticks"
def __init__(self, master):
self.grid_settings: Dict = None
self.master: BarPlotGraph = master
super().__init__()
def update_setters(self):
self.grid_settings = {
Updater.ALPHA_LABEL: self.DEFAULT_ALPHA_GRID,
self.SHOW_GRID_LABEL: self.DEFAULT_SHOW_GRID,
}
self.initial_settings = {
self.LABELS_BOX: {
self.FONT_FAMILY_LABEL: self.FONT_FAMILY_SETTING,
self.TITLE_LABEL: self.FONT_SETTING,
self.AXIS_TITLE_LABEL: self.FONT_SETTING,
self.AXIS_TICKS_LABEL: self.FONT_SETTING,
self.LEGEND_LABEL: self.FONT_SETTING,
},
self.ANNOT_BOX: {
self.TITLE_LABEL: {self.TITLE_LABEL: ("", "")},
},
self.PLOT_BOX: {
self.GRID_LABEL: {
self.SHOW_GRID_LABEL: (None, True),
Updater.ALPHA_LABEL: (range(0, 255, 5),
self.DEFAULT_ALPHA_GRID),
},
self.BOTTOM_AXIS_LABEL: {
self.IS_VERTICAL_LABEL: (None, True),
},
self.GROUP_AXIS_LABEL: {
self.IS_VERTICAL_LABEL: (None, False),
},
},
}
def update_grid(**settings):
self.grid_settings.update(**settings)
self.master.showGrid(y=self.grid_settings[self.SHOW_GRID_LABEL],
alpha=self.grid_settings[Updater.ALPHA_LABEL] / 255)
def update_bottom_axis(**settings):
axis = self.master.getAxis("bottom")
axis.setRotateTicks(settings[self.IS_VERTICAL_LABEL])
def update_group_axis(**settings):
axis = self.master.group_axis
axis.setRotateTicks(settings[self.IS_VERTICAL_LABEL])
self._setters[self.PLOT_BOX] = {
self.GRID_LABEL: update_grid,
self.BOTTOM_AXIS_LABEL: update_bottom_axis,
self.GROUP_AXIS_LABEL: update_group_axis,
}
@property
def title_item(self):
return self.master.getPlotItem().titleLabel
@property
def axis_items(self):
return [value["item"] for value in
self.master.getPlotItem().axes.values()]
@property
def legend_items(self):
return self.master.legend.items
class BarPlotGraph(PlotWidget):
selection_changed = Signal(list)
bar_width = 0.7
def __init__(self, master, parent=None):
self.selection = []
self.master: OWBarPlot = master
self.state: int = SELECT
self.bar_item: pg.BarGraphItem = None
super().__init__(
parent=parent,
viewBox=BarPlotViewBox(self),
enableMenu=False,
axisItems={"bottom": AxisItem(orientation="bottom",
rotate_ticks=True),
"left": AxisItem(orientation="left")}
)
self.hideAxis("left")
self.hideAxis("bottom")
self.getPlotItem().buttonsHidden = True
self.getPlotItem().setContentsMargins(10, 0, 0, 10)
self.getViewBox().setMouseMode(pg.ViewBox.PanMode)
self.group_axis = AxisItem("bottom")
self.group_axis.hide()
self.group_axis.linkToView(self.getViewBox())
self.getPlotItem().layout.addItem(self.group_axis, 4, 1)
self.legend = self._create_legend()
self.tooltip_delegate = HelpEventDelegate(self.help_event)
self.scene().installEventFilter(self.tooltip_delegate)
self.parameter_setter = ParameterSetter(self)
self.showGrid(y=self.parameter_setter.DEFAULT_SHOW_GRID,
alpha=self.parameter_setter.DEFAULT_ALPHA_GRID / 255)
def _create_legend(self):
legend = LegendItem()
legend.setParentItem(self.getViewBox())
legend.anchor((1, 0), (1, 0), offset=(-3, 1))
legend.hide()
return legend
def update_legend(self):
self.legend.clear()
self.legend.hide()
for color, text in self.master.get_legend_data():
dot = pg.ScatterPlotItem(
pen=pg.mkPen(color=color),
brush=pg.mkBrush(color=color)
)
self.legend.addItem(dot, escape(text))
self.legend.show()
Updater.update_legend_font(self.legend.items,
**self.parameter_setter.legend_settings)
def reset_graph(self):
self.clear()
self.update_bars()
self.update_axes()
self.update_group_lines()
self.update_legend()
self.reset_view()
def update_bars(self):
if self.bar_item is not None:
self.removeItem(self.bar_item)
self.bar_item = None
values = self.master.get_values()
if values is None:
return
self.bar_item = pg.BarGraphItem(
x=np.arange(len(values)),
height=values,
width=self.bar_width,
pen=pg.mkPen(QColor(Qt.white)),
labels=self.master.get_labels(),
brushes=self.master.get_colors(),
)
self.addItem(self.bar_item)
self.__select_bars()
def update_axes(self):
if self.bar_item is not None:
self.showAxis("left")
self.showAxis("bottom")
self.group_axis.show()
vals_label, group_label, annot_label = self.master.get_axes()
self.setLabel(axis="left", text=vals_label)
self.setLabel(axis="bottom", text=annot_label)
self.group_axis.setLabel(group_label)
ticks = [list(enumerate(self.master.get_labels()))]
self.getAxis('bottom').setTicks(ticks)
labels = np.array(self.master.get_group_labels())
_, indices, counts = \
np.unique(labels, return_index=True, return_counts=True)
ticks = [[(i + (c - 1) / 2, labels[i]) for i, c in
zip(indices, counts)]]
self.group_axis.setTicks(ticks)
if not group_label:
self.group_axis.hide()
elif not annot_label:
self.hideAxis("bottom")
else:
self.hideAxis("left")
self.hideAxis("bottom")
self.group_axis.hide()
def reset_view(self):
if self.bar_item is None:
return
values = np.append(self.bar_item.opts["height"], 0)
min_ = np.nanmin(values)
max_ = -min_ + np.nanmax(values)
rect = QRectF(-0.5, min_, len(values) - 1, max_)
self.getViewBox().setRange(rect)
def zoom_button_clicked(self):
self.state = ZOOMING
self.getViewBox().setMouseMode(pg.ViewBox.RectMode)
def pan_button_clicked(self):
self.state = PANNING
self.getViewBox().setMouseMode(pg.ViewBox.PanMode)
def select_button_clicked(self):
self.state = SELECT
self.getViewBox().setMouseMode(pg.ViewBox.RectMode)
def reset_button_clicked(self):
self.reset_view()
def update_group_lines(self):
if self.bar_item is None:
return
labels = np.array(self.master.get_group_labels())
if labels is None or len(labels) == 0:
return
_, indices = np.unique(labels, return_index=True)
offset = self.bar_width / 2 + (1 - self.bar_width) / 2
for index in sorted(indices)[1:]:
line = pg.InfiniteLine(pos=index - offset, angle=90)
self.addItem(line)
def select_by_rectangle(self, rect: QRectF):
if self.bar_item is None:
return
x0, x1 = sorted((rect.topLeft().x(), rect.bottomRight().x()))
y0, y1 = sorted((rect.topLeft().y(), rect.bottomRight().y()))
x = self.bar_item.opts["x"]
height = self.bar_item.opts["height"]
d = self.bar_width / 2
# positive bars
mask = (x0 <= x + d) & (x1 >= x - d) & (y0 <= height) & (y1 > 0)
# negative bars
mask |= (x0 <= x + d) & (x1 >= x - d) & (y0 <= 0) & (y1 > height)
self.select_by_indices(list(np.flatnonzero(mask)))
def select_by_click(self, p: QPointF):
if self.bar_item is None:
return
index = self.__get_index_at(p)
self.select_by_indices([index] if index is not None else [])
def __get_index_at(self, p: QPointF):
x = p.x()
index = round(x)
heights = self.bar_item.opts["height"]
if 0 <= index < len(heights) and abs(x - index) <= self.bar_width / 2:
height = heights[index] # pylint: disable=unsubscriptable-object
if 0 <= p.y() <= height or height <= p.y() <= 0:
return index
return None
def select_by_indices(self, indices: List):
keys = QApplication.keyboardModifiers()
if keys & Qt.ControlModifier:
self.selection = list(set(self.selection) ^ set(indices))
elif keys & Qt.AltModifier:
self.selection = list(set(self.selection) - set(indices))
elif keys & Qt.ShiftModifier:
self.selection = list(set(self.selection) | set(indices))
else:
self.selection = list(set(indices))
self.__select_bars()
self.selection_changed.emit(self.selection)
def __select_bars(self):
if self.bar_item is None:
return
n = len(self.bar_item.opts["height"])
pens = np.full(n, pg.mkPen(QColor(Qt.white)))
pen = pg.mkPen(QColor(Qt.black))
pen.setStyle(Qt.DashLine)
pens[self.selection] = pen
self.bar_item.setOpts(pens=pens)
def help_event(self, ev: QGraphicsSceneHelpEvent):
if self.bar_item is None:
return False
index = self.__get_index_at(self.bar_item.mapFromScene(ev.scenePos()))
text = ""
if index is not None:
text = self.master.get_tooltip(index)
if text:
QToolTip.showText(ev.screenPos(), text, widget=self)
return True
else:
return False
class OWBarPlot(OWWidget):
name = "Bar Plot"
description = "Visualizes comparisons among categorical variables."
icon = "icons/BarPlot.svg"
priority = 190
keywords = "bar plot, chart"
class Inputs:
data = Input("Data", Table, default=True)
data_subset = Input("Data Subset", Table)
class Outputs:
selected_data = Output("Selected Data", Table, default=True)
annotated_data = Output(ANNOTATED_DATA_SIGNAL_NAME, Table)
buttons_area_orientation = Qt.Vertical
settingsHandler = DomainContextHandler()
selected_var = ContextSetting(None)
group_var = ContextSetting(None)
annot_var = ContextSetting(None)
color_var = ContextSetting(None)
auto_commit = Setting(True)
selection = Setting(None, schema_only=True)
visual_settings = Setting({}, schema_only=True)
graph = SettingProvider(BarPlotGraph)
graph_name = "graph.plotItem" # QGraphicsView (pg.PlotWidget -> BarPlotGraph)
class Error(OWWidget.Error):
no_cont_features = Msg("Plotting requires a numeric feature.")
class Information(OWWidget.Information):
too_many_instances = Msg("Data has too many instances. Only first {}"
" are shown.".format(MAX_INSTANCES))
enumeration = "Enumeration"
def __init__(self):
super().__init__()
self.data: Optional[Table] = None
self.orig_data: Optional[Table] = None
self.subset_data: Optional[Table] = None
self.subset_indices = []
self.graph: Optional[BarPlotGraph] = None
self._selected_var_model: Optional[DomainModel] = None
self._group_var_model: Optional[DomainModel] = None
self._annot_var_model: Optional[DomainModel] = None
self._color_var_model: Optional[DomainModel] = None
self.__pending_selection = self.selection
self.setup_gui()
VisualSettingsDialog(
self, self.graph.parameter_setter.initial_settings
)
def setup_gui(self):
self._add_graph()
self._add_controls()
def _add_graph(self):
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = BarPlotGraph(self)
self.graph.selection_changed.connect(self.__selection_changed)
box.layout().addWidget(self.graph)
def __selection_changed(self, indices: List):
self.selection = list(set(self.grouped_indices[indices]))
self.commit.deferred()
def _add_controls(self):
box = gui.vBox(self.controlArea, True)
gui.rubber(self.controlArea)
self._selected_var_model = DomainModel(valid_types=ContinuousVariable)
gui.comboBox(
box, self, "selected_var", label="Values:",
model=self._selected_var_model, contentsLength=12, searchable=True,
orientation=Qt.Horizontal, callback=self.__parameter_changed,
)
self._group_var_model = DomainModel(
placeholder="None", valid_types=DiscreteVariable
)
gui.comboBox(
box, self, "group_var", label="Group by:",
model=self._group_var_model, contentsLength=12, searchable=True,
orientation=Qt.Horizontal, callback=self.__group_var_changed,
)
self._annot_var_model = DomainModel(
placeholder="None",
valid_types=(DiscreteVariable, StringVariable)
)
self._annot_var_model.order = self._annot_var_model.order[:1] + \
(self.enumeration,) + \
self._annot_var_model.order[1:]
gui.comboBox(
box, self, "annot_var", label="Annotations:",
model=self._annot_var_model, contentsLength=12, searchable=True,
orientation=Qt.Horizontal, callback=self.__parameter_changed,
)
self._color_var_model = DomainModel(
placeholder="(Same color)", valid_types=DiscreteVariable
)
gui.comboBox(
box, self, "color_var", label="Color:",
model=self._color_var_model,
contentsLength=12, searchable=True, orientation=Qt.Horizontal,
callback=self.__parameter_changed,
)
plot_gui = OWPlotGUI(self)
plot_gui.box_zoom_select(self.buttonsArea)
gui.auto_send(self.buttonsArea, self, "auto_commit")
def __parameter_changed(self):
self.graph.reset_graph()
def __group_var_changed(self):
self.clear_cache()
self.graph.selection = self.grouped_indices_inverted
self.__parameter_changed()
@property
@lru_cache()
def grouped_indices(self):
indices = []
if self.data:
indices = np.arange(len(self.data))
if self.group_var:
group_by = self.data.get_column(self.group_var)
indices = np.argsort(group_by, kind="mergesort")
return indices
@property
def grouped_indices_inverted(self):
mask = np.isin(self.grouped_indices, self.selection)
return np.flatnonzero(mask)
@property
def grouped_data(self):
return self.data[self.grouped_indices]
@Inputs.data
@check_sql_input
def set_data(self, data: Optional[Table]):
self.closeContext()
self.clear()
self.orig_data = self.data = data
self.check_data()
self.init_attr_values()
self.openContext(self.data)
self.clear_cache()
self.commit.now()
def check_data(self):
self.clear_messages()
if self.data is not None:
if self.data.domain.has_continuous_attributes(True, True) == 0:
self.Error.no_cont_features()
self.data = None
elif len(self.data) > MAX_INSTANCES:
self.Information.too_many_instances()
self.data = self.data[:MAX_INSTANCES]
def init_attr_values(self):
domain = self.data.domain if self.data else None
for model, var in ((self._selected_var_model, "selected_var"),
(self._group_var_model, "group_var"),
(self._annot_var_model, "annot_var"),
(self._color_var_model, "color_var")):
model.set_domain(domain)
setattr(self, var, None)
if self._selected_var_model:
self.selected_var = self._selected_var_model[0]
if domain is not None and domain.has_discrete_class:
self.color_var = domain.class_var
@Inputs.data_subset
@check_sql_input
def set_subset_data(self, data: Optional[Table]):
self.subset_data = data
def handleNewSignals(self):
self._handle_subset_data()
self.setup_plot()
def _handle_subset_data(self):
sub_ids = {e.id for e in self.subset_data} \
if self.subset_data is not None else {}
self.subset_indices = []
if self.data is not None and sub_ids:
self.subset_indices = [x.id for x in self.data if x.id in sub_ids]
def get_values(self) -> Optional[np.ndarray]:
if not self.data or not self.selected_var:
return None
return self.grouped_data.get_column(self.selected_var)
def get_labels(self) -> Optional[Union[List, np.ndarray]]:
if not self.data:
return None
elif not self.annot_var:
return []
elif self.annot_var == self.enumeration:
return [
str(x)
for x in np.arange(1, len(self.data) + 1)[self.grouped_indices]
]
else:
return [self.annot_var.str_val(row[self.annot_var])
for row in self.grouped_data]
def get_group_labels(self) -> Optional[List]:
if not self.data:
return None
elif not self.group_var:
return []
else:
return [self.group_var.str_val(row[self.group_var])
for row in self.grouped_data]
def get_legend_data(self) -> List:
if not self.data or not self.color_var:
return []
else:
assert self.color_var.is_discrete
return [(QColor(*color), text) for color, text in
zip(self.color_var.colors, self.color_var.values)]
def get_colors(self) -> Optional[List[QColor]]:
def create_color(i, id_):
lighter = id_ not in self.subset_indices and self.subset_indices
alpha = 50 if lighter else 255
if np.isnan(i):
return QColor(*(128, 128, 128, alpha))
return QColor(*np.append(self.color_var.colors[int(i)], alpha))
if not self.data:
return None
elif not self.color_var:
return [create_color(np.nan, id_) for id_ in self.grouped_data.ids]
else:
assert self.color_var.is_discrete
col = self.grouped_data.get_column(self.color_var)
return [create_color(i, id_) for id_, i in
zip(self.grouped_data.ids, col)]
def get_tooltip(self, index: int) -> str:
if not self.data:
return ""
row = self.grouped_data[index]
attrs = [self.selected_var]
if self.group_var and self.group_var not in attrs:
attrs.append(self.group_var)
if isinstance(self.annot_var, Variable) and self.annot_var not in attrs:
attrs.append(self.annot_var)
if self.color_var and self.color_var not in attrs:
attrs.append(self.color_var)
text = "<br/>".join(escape('{} = {}'.format(var.name, row[var]))
for var in attrs)
others = instance_tooltip(self.data.domain, row, skip_attrs=attrs)
if others:
text = "<b>{}</b><br/><br/>{}".format(text, others)
return text
def get_axes(self) -> Optional[Tuple[str, str, str]]:
if not self.data:
return None
return (self.selected_var.name,
self.group_var.name if self.group_var else "",
self.annot_var if self.annot_var else "")
def setup_plot(self):
self.graph.reset_graph()
self.apply_selection()
def apply_selection(self):
if self.data and self.__pending_selection is not None:
self.selection = [i for i in self.__pending_selection
if i < len(self.data)]
self.graph.select_by_indices(self.grouped_indices_inverted)
self.__pending_selection = None
@gui.deferred
def commit(self):
selected = None
if self.data is not None and bool(self.selection):
selected = self.data[self.selection]
annotated = create_annotated_table(self.orig_data, self.selection)
self.Outputs.selected_data.send(selected)
self.Outputs.annotated_data.send(annotated)
def clear(self):
self.selection = None
self.graph.selection = []
self.clear_cache()
@staticmethod
def clear_cache():
OWBarPlot.grouped_indices.fget.cache_clear()
def send_report(self):
if self.data is None:
return
self.report_plot()
def set_visual_settings(self, key: KeyType, value: ValueType):
self.graph.parameter_setter.set_parameter(key, value)
self.visual_settings[key] = value
def sizeHint(self): # pylint: disable=no-self-use
return QSize(1132, 708)
def showEvent(self, event):
super().showEvent(event)
self.graph.reset_view()
if __name__ == "__main__":
from Orange.widgets.utils.widgetpreview import WidgetPreview
iris = Table("iris")
WidgetPreview(OWBarPlot).run(set_data=iris[::3],
set_subset_data=iris[::15])
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