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<!doctype html>
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<title>p4est Citations and Bibliography</title>
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<h1><tt>p4est</tt> Citations and Bibliography</h1>
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<p>
The <tt>p4est</tt> software library enables the dynamic management of
a collection of adaptive octrees, conveniently called a forest of
octrees. <tt>p4est</tt> is designed to work in parallel and scales to
hundreds of thousands, even millions, of processor cores.
It is actively maintained and used by researchers worldwide.
</p>
<p>
<tt>p4est</tt> is free software released under GNU General Public Licence
version 2, or (at your option) any later version.
</p>
<div class="citation">
<h3>Technical papers / Citations</h3>
<!--
<p>
The original technical paper on <tt>p4est</tt> is
<a href="https://p4est.github.io/papers/BursteddeWilcoxGhattas11.pdf">paper1 available as pdf</a> [1a].
We have recently submitted a second technical paper to cover additional
API functions;
<a href="https://arxiv.org/abs/1406.0089">see here for paper2</a> [1b].
Recently, the 2:1 balance algorithm has been rewritten; see
<a href="https://p4est.github.io/papers/IsaacBursteddeGhattas12.pdf"
>this article</a> [1c] on the new logic.
</p>
//-->
<p>
If you use <tt>p4est</tt> for your publications, please cite it as follows [1a].
The reference [1b] is for people specifically using the topology iterator, the
high-order node numbering, or the top-down search.
[1c] is for people interested in the 2:1 balance details, the strong scaling
limit and/or memory footprint.
Recent algorithms for searching remote objects in the partition and
partition-independent load and save are in press [1d].
</p>
<p class="cite">
[1a]
Carsten Burstedde, Lucas C. Wilcox, and Omar Ghattas,<br>
<em>p4est: Scalable Algorithms for Parallel Adaptive Mesh Refinement on
Forests of Octrees.</em><br>
Published in SIAM Journal on Scientific Computing 33 no. 3 (2011),
pages 1103-1133
(<a href="https://p4est.github.io/papers/BursteddeWilcoxGhattas11.pdf">download</a>).
</p>
<pre class="bibtex">
@ARTICLE{BursteddeWilcoxGhattas11,
author = {Carsten Burstedde and Lucas C. Wilcox and Omar Ghattas},
title = {{\texttt{p4est}}: Scalable Algorithms for Parallel Adaptive Mesh
Refinement on Forests of Octrees},
journal = {SIAM Journal on Scientific Computing},
volume = {33},
number = {3},
pages = {1103-1133},
year = {2011},
doi = {10.1137/100791634}
}
</pre>
<p class="cite">
[1b]
Tobin Isaac, Carsten Burstedde, Lucas C. Wilcox, and Omar Ghattas,<br>
<em>Recursive algorithms for distributed forests of octrees.</em><br>
Published in SIAM Journal on Scientific Computing 37 no. 5 (2015),
pages C497-C531
(<a href="https://p4est.github.io/papers/IsaacBursteddeWilcoxEtAl15.pdf">download</a>).
</p>
<pre class="bibtex">
@ARTICLE{IsaacBursteddeWilcoxEtAl15,
author = {Tobin Isaac and Carsten Burstedde and Lucas C. Wilcox and Omar Ghattas},
title = {Recursive algorithms for distributed forests of octrees},
journal = {SIAM Journal on Scientific Computing},
volume = {37},
number = {5},
pages = {C497-C531},
year = {2015},
doi = {10.1137/140970963}
}
</pre>
<p class="cite">
[1c]
Tobin Isaac, Carsten Burstedde, and Omar Ghattas,<br>
<em>Low-Cost Parallel Algorithms for 2:1 Octree Balance.</em><br>
Published in Proceedings of the 26th IEEE International Parallel &
Distributed Processing Symposium, 2012
(<a href="https://p4est.github.io/papers/IsaacBursteddeGhattas12.pdf">download</a>).
<em>Erratum:</em>
In Algorithm 7, line 3 reads
\(\text{for all}\ o\in R\ \text{do}\);
it should read
\(\text{for all}\ o\in R\cup R^{\text{new}}\ \text{do}\).
</p>
<p class="cite">
[1d]
Carsten Burstedde.
<em>Parallel tree algorithms for AMR and non-standard data access</em>.
Accepted for publication in ACM Transactions on Mathematical Software
<a href="https://arxiv.org/abs/1803.08432">(preprint)</a>.
<!--
@MISC{Burstedde18,
author = {Carsten Burstedde},
title = {Parallel tree algorithms for {AMR} and non-standard data access},
year = {2018},
note = {https://arxiv.org/abs/1803.08432. Accepted for publication
in ACM Transactions on Mathematical Software}
}
//-->
</p>
</div>
<div class="citation">
<h3>ForestClaw</h3>
<p>
The <a href="http://www.forestclaw.org/">ForestClaw</a> project is an
ongoing collaboration with
<a href="https://math.boisestate.edu/~calhoun/www_personal/">Donna Calhoun</a>
to solve hyperpolic PDEs.
Please cite the initial article below; an updated paper is in preparation
with initial versions <a href="https://arxiv.org/abs/1703.03116">on the
arxiv</a>.
</p>
<pre class="bibtex">
@INPROCEEDINGS{BursteddeCalhounMandliEtAl14,
author = {Carsten Burstedde and Donna Calhoun
and Kyle T. Mandli and Andy R. Terrel},
title = {ForestClaw: Hybrid forest-of-octrees {AMR}
for hyperbolic conservation laws},
booktitle = {Parallel Computing: Accelerating Computational Science
and Engineering (CSE)},
year = {2014},
editor = {Michael Bader and Arndt Bode and Hans-Joachim Bungartz
and Michael Gerndt and Gerhard R. Joubert and Frans Peters},
volume = {25},
series = {Advances in Parallel Computing},
pages = {253-262},
publisher = {IOS Press},
doi = {10.3233/978-1-61499-381-0-253}
}
</pre>
</div>
<div class="citation">
<h3>deal.II</h3>
<p>
The generic adaptive finite element software <a
href="https://www.dealii.org/">deal.II</a> now interfaces to
<tt>p4est</tt> to obtain distributed mesh information [2]. The corresponding
algorithms are described in this <a
href="https://p4est.github.io/papers/BangerthBursteddeHeisterEtAl11.pdf"
>article</a>. If you use deal.II with <tt>p4est</tt> for your
publications, please cite it as:
</p>
<p class="cite">
[2]
Wolfgang Bangerth, Carsten Burstedde, Timo Heister, and Martin
Kronbichler,<br>
<em>Algorithms and Data Structures for Massively Parallel Generic
Adaptive Finite Element Codes.</em><br>
Published in ACM Transactions on Mathematical Software 38 No. 2 (2011),
pages 14:1-14:28
(<a href="https://p4est.github.io/papers/BangerthBursteddeHeisterEtAl11.pdf">download</a>).
</p>
<pre class="bibtex">
@ARTICLE{BangerthBursteddeHeisterEtAl11,
author = {Wolfgang Bangerth and Carsten Burstedde and Timo Heister and Martin
Kronbichler},
title = {Algorithms and Data Structures for Massively Parallel Generic Adaptive
Finite Element Codes},
journal = {ACM Transactions on Mathematical Software},
volume = {38},
number = {2},
pages = {14:1-14:28},
year = {2011}
}
</pre>
</div>
<div class="citation">
<h3>PETSc</h3>
<p>
The <tt>p4est</tt> library is being extended to implement AMR in <a
href="https://www.mcs.anl.gov/petsc/">PETSc</a>, the Portable Extensible
Toolkit for Scientific Computation. The interface and design decisions are
described in this <a href="https://arxiv.org/abs/1508.02470">article</a>. If
you use the <tt>p4est</tt> backend for <tt>PETSc</tt> for your publications,
please cite it as:
</p>
<p class="cite">
[3]
Tobin Isaac, Matthew G. Knepley,<br>
<em>Support for Non-conformal Meshes in PETSc's DMPlex Interface</em><br>
(<a href="https://arxiv.org/pdf/1508.02470">download</a>).
</p>
<pre class="bibtex">
@ARTICLE{IsaacKnepley15,
author = {Tobin Isaac and Matthew G. Knepley},
title = {Support for Non-conformal Meshes in {PETSc}'s {DMPlex} Interface},
journal = {ACM Transactions on Mathematical Software},
eprinttype = {arxiv},
eprint = {1508.02470},
url = {https://arxiv.org/abs/1508.02470}
}
</pre>
</div>
</main>
<footer>
<p>
The <tt>p4est</tt> authors:<br>
<a href="https://ins.uni-bonn.de/staff/burstedde">Carsten Burstedde</a><br>
<a href="https://lucaswilcox.com/">Lucas C. Wilcox</a><br>
<a href="https://www.cse.gatech.edu/people/12734/tobin-isaacs/">Tobin
Isaac</a><br>
Thanks to our contributors! Please see the
<a href="https://github.com/cburstedde/p4est/tree/master/AUTHORS">AUTHORS</a>
file for details.
</p>
<p class="citation">
The development of <tt>p4est</tt> was partially supported by the US National
Science Foundation (NSF Grants No. CCF-0427985, CMMI-1028889, CNS-0540372,
CNS-0619838, DMS-0724746, OCI-0749334, OPP-0941678) and the US Department of
Energy (DOE Grants No. 06ER25782, 08ER25860, SC0002710).
The authors thank the Texas
Advanced Computing Center (TACC) for providing them with access to the Ranger
supercomputer under NSF TeraGrid award MCA04N026, and the National Center for
Computational Science (NCCS) for early-user access to the Jaguar Cray XT5
supercomputer. Any opinions, findings and conclusions or recomendations
expressed on this web page or in the source code and documentation are those of
the authors and do not necessarily reflect the views of the National Science
Foundation (NSF).
</p>
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