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/*
This file is part of p4est.
p4est is a C library to manage a collection (a forest) of multiple
connected adaptive quadtrees or octrees in parallel.
Copyright (C) 2010 The University of Texas System
Additional copyright (C) 2011 individual authors
Written by Carsten Burstedde, Lucas C. Wilcox, and Tobin Isaac
p4est is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
p4est is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with p4est; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
*/
#ifndef P4_TO_P8
#include <p4est_algorithms.h>
#include <p4est_bits.h>
#include <p4est_communication.h>
#include <p4est_extended.h>
#include <p4est_io.h>
#else
#include <p8est_algorithms.h>
#include <p8est_bits.h>
#include <p8est_communication.h>
#include <p8est_extended.h>
#include <p8est_io.h>
#endif
#include <sc_options.h>
#include <sc_statistics.h>
#ifndef P4_TO_P8
#define P4EST_CONN_SUFFIX "p4c"
#define P4EST_FOREST_SUFFIX "p4p"
static const int default_refine_level = 7;
#else
#define P4EST_CONN_SUFFIX "p8c"
#define P4EST_FOREST_SUFFIX "p8p"
static const int default_refine_level = 4;
#endif
static int refine_level = 0;
static int counter = 0;
static void
init_fn (p4est_t * p4est, p4est_topidx_t which_tree,
p4est_quadrant_t * quadrant)
{
int *data = (int *) quadrant->p.user_data;
*data = (counter = counter * 1664525 + 1013904223) + (int) which_tree;
}
static int
refine_fn (p4est_t * p4est, p4est_topidx_t which_tree,
p4est_quadrant_t * quadrant)
{
int cid;
if (which_tree == 2 || which_tree == 3) {
return 0;
}
cid = p4est_quadrant_child_id (quadrant);
if (cid == P4EST_CHILDREN - 1 ||
(quadrant->x >= P4EST_LAST_OFFSET (P4EST_MAXLEVEL - 2) &&
quadrant->y >= P4EST_LAST_OFFSET (P4EST_MAXLEVEL - 2)
#ifdef P4_TO_P8
&& quadrant->z >= P4EST_LAST_OFFSET (P4EST_MAXLEVEL - 2)
#endif
)) {
return 1;
}
if ((int) quadrant->level >= (refine_level - (int) (which_tree % 3))) {
return 0;
}
if (quadrant->level == 1 && cid == 2) {
return 1;
}
if (quadrant->y == P4EST_QUADRANT_LEN (2) &&
quadrant->x == P4EST_LAST_OFFSET (2)) {
return 1;
}
if (quadrant->y >= P4EST_QUADRANT_LEN (2)) {
return 0;
}
return 1;
}
enum
{
STATS_CONN_LOAD,
STATS_P4EST_SAVE1,
STATS_P4EST_LOAD1a,
STATS_P4EST_LOAD1b,
STATS_P4EST_ELEMS,
STATS_P4EST_SAVE2,
STATS_P4EST_LOAD2,
STATS_P4EST_SAVE3,
STATS_P4EST_LOAD3,
STATS_P4EST_LOAD4,
STATS_COUNT
};
static void
test_deflate (p4est_t * p4est)
{
p4est_gloidx_t *pertree;
p4est_t *p4est2;
sc_array_t *qarr, *darr;
pertree = P4EST_ALLOC (p4est_gloidx_t, p4est->connectivity->num_trees + 1);
p4est_comm_count_pertree (p4est, pertree);
darr = NULL;
qarr = p4est_deflate_quadrants (p4est, p4est->data_size > 0 ? &darr : NULL);
/* Data that describes the forest completely
(a) shared data (identical on all processors):
p4est->connectivity
p4est->global_first_quadrant (does not need to be stored away)
pertree
(b) per-processor data (partition independent after allgatherv):
qarr
darr (if per-quadrant data size is greater 0 and it should be saved)
*/
/* Create a forest from this information and compare */
p4est2 = p4est_inflate (p4est->mpicomm, p4est->connectivity,
p4est->global_first_quadrant, pertree,
qarr, darr, p4est->user_pointer);
SC_CHECK_ABORT (p4est_is_equal (p4est, p4est2, 1), "de/inflate");
p4est_destroy (p4est2);
/* clean up allocated memory */
P4EST_FREE (pertree);
sc_array_destroy (qarr);
if (darr != NULL) {
sc_array_destroy (darr);
}
}
static void
test_loadsave (p4est_connectivity_t * connectivity, const char *prefix,
sc_MPI_Comm mpicomm, int mpirank)
{
int mpiret, retval;
unsigned csum, csum2;
double elapsed, wtime;
p4est_connectivity_t *conn2;
p4est_t *p4est, *p4est2;
sc_statinfo_t stats[STATS_COUNT];
char conn_name[BUFSIZ];
char p4est_name[BUFSIZ];
snprintf (conn_name, BUFSIZ, "%s.%s", prefix, P4EST_CONN_SUFFIX);
snprintf (p4est_name, BUFSIZ, "%s.%s", prefix, P4EST_FOREST_SUFFIX);
P4EST_GLOBAL_INFOF ("Using file names %s and %s\n", conn_name, p4est_name);
p4est = p4est_new_ext (mpicomm, connectivity, 0, 0, 0,
sizeof (int), init_fn, NULL);
p4est_refine (p4est, 1, refine_fn, init_fn);
test_deflate (p4est);
/* save, synchronize, load connectivity and compare */
if (mpirank == 0) {
retval = p4est_connectivity_save (conn_name, connectivity);
SC_CHECK_ABORT (retval == 0, "connectivity_save failed");
}
mpiret = sc_MPI_Barrier (mpicomm);
SC_CHECK_MPI (mpiret);
wtime = sc_MPI_Wtime ();
conn2 = p4est_connectivity_load (conn_name, NULL);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_CONN_LOAD, elapsed, "conn load");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch A");
p4est_connectivity_destroy (conn2);
/* save, synchronize, load p4est and compare */
wtime = sc_MPI_Wtime ();
p4est_save (p4est_name, p4est, 1);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_SAVE1, elapsed, "p4est save 1");
wtime = sc_MPI_Wtime ();
p4est2 = p4est_load (p4est_name, mpicomm, sizeof (int), 1, NULL, &conn2);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_LOAD1a, elapsed, "p4est load 1a");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch Ba");
SC_CHECK_ABORT (p4est_is_equal (p4est, p4est2, 1),
"load/save p4est mismatch Ba");
p4est_destroy (p4est2);
p4est_connectivity_destroy (conn2);
wtime = sc_MPI_Wtime ();
p4est2 = p4est_load (p4est_name, mpicomm, 0, 0, NULL, &conn2);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_LOAD1b, elapsed, "p4est load 1b");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch Bb");
SC_CHECK_ABORT (p4est_is_equal (p4est, p4est2, 0),
"load/save p4est mismatch Bb");
test_deflate (p4est2);
p4est_destroy (p4est2);
p4est_connectivity_destroy (conn2);
/* partition and balance */
p4est_partition (p4est, 0, NULL);
p4est_balance (p4est, P4EST_CONNECT_FULL, init_fn);
csum = p4est_checksum (p4est);
sc_stats_set1 (stats + STATS_P4EST_ELEMS,
(double) p4est->local_num_quadrants, "p4est elements");
/* save, synchronize, load p4est and compare */
wtime = sc_MPI_Wtime ();
p4est_save (p4est_name, p4est, 0);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_SAVE2, elapsed, "p4est save 2");
wtime = sc_MPI_Wtime ();
p4est2 = p4est_load (p4est_name, mpicomm, sizeof (int), 0, NULL, &conn2);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_LOAD2, elapsed, "p4est load 2");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch C");
SC_CHECK_ABORT (p4est_is_equal (p4est, p4est2, 0),
"load/save p4est mismatch C");
p4est_destroy (p4est2);
p4est_connectivity_destroy (conn2);
/* save, synchronize, load p4est and compare */
wtime = sc_MPI_Wtime ();
p4est_save (p4est_name, p4est, 1);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_SAVE3, elapsed, "p4est save 3");
wtime = sc_MPI_Wtime ();
p4est2 = p4est_load (p4est_name, mpicomm, sizeof (int), 0, NULL, &conn2);
elapsed = sc_MPI_Wtime () - wtime;
sc_stats_set1 (stats + STATS_P4EST_LOAD3, elapsed, "p4est load 3");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch D");
SC_CHECK_ABORT (p4est_is_equal (p4est, p4est2, 0),
"load/save p4est mismatch D");
p4est_destroy (p4est2);
p4est_connectivity_destroy (conn2);
/* Test autopartition load feature */
wtime = sc_MPI_Wtime ();
p4est2 = p4est_load_ext (p4est_name, mpicomm, sizeof (int), 0,
1, 0, NULL, &conn2);
elapsed = sc_MPI_Wtime () - wtime;
csum2 = p4est_checksum (p4est2);
sc_stats_set1 (stats + STATS_P4EST_LOAD4, elapsed, "p4est load 4");
SC_CHECK_ABORT (p4est_connectivity_is_equal (connectivity, conn2),
"load/save connectivity mismatch E");
SC_CHECK_ABORT (mpirank != 0 || csum == csum2,
"load/save p4est mismatch E");
p4est_destroy (p4est2);
p4est_connectivity_destroy (conn2);
/* destroy data structures */
p4est_destroy (p4est);
/* compute and print timings */
sc_stats_compute (mpicomm, STATS_COUNT, stats);
sc_stats_print (p4est_package_id, SC_LP_STATISTICS,
STATS_COUNT, stats, 0, 1);
}
int
main (int argc, char **argv)
{
sc_MPI_Comm mpicomm;
int mpiret;
int mpirank;
int first_arg;
const char *prefix;
p4est_connectivity_t *connectivity;
sc_options_t *opt;
/* initialize MPI */
mpiret = sc_MPI_Init (&argc, &argv);
SC_CHECK_MPI (mpiret);
mpicomm = sc_MPI_COMM_WORLD;
mpiret = sc_MPI_Comm_rank (mpicomm, &mpirank);
SC_CHECK_MPI (mpiret);
/* initialize libsc and p4est */
sc_init (mpicomm, 1, 1, NULL, SC_LP_DEFAULT);
p4est_init (NULL, SC_LP_DEFAULT);
/* handle command line options */
opt = sc_options_new (argv[0]);
sc_options_add_int (opt, 'l', "level", &refine_level,
default_refine_level, "Refinement level");
sc_options_add_string (opt, 'o', "oprefix", &prefix,
P4EST_STRING, "Output prefix");
first_arg = sc_options_parse (p4est_package_id, SC_LP_INFO,
opt, argc, argv);
SC_CHECK_ABORT (first_arg >= 0, "Option error");
/* create connectivity */
#ifndef P4_TO_P8
connectivity = p4est_connectivity_new_star ();
#else
connectivity = p8est_connectivity_new_rotcubes ();
#endif
/* test with vertex information */
test_loadsave (connectivity, prefix, mpicomm, mpirank);
/* test without vertex information */
connectivity->num_vertices = 0;
P4EST_FREE (connectivity->vertices);
connectivity->vertices = NULL;
P4EST_FREE (connectivity->tree_to_vertex);
connectivity->tree_to_vertex = NULL;
p4est_connectivity_set_attr (connectivity, 1);
memset (connectivity->tree_to_attr, 0,
connectivity->num_trees * sizeof (int8_t));
test_loadsave (connectivity, prefix, mpicomm, mpirank);
/* clean up and exit */
p4est_connectivity_destroy (connectivity);
sc_options_destroy (opt);
sc_finalize ();
mpiret = sc_MPI_Finalize ();
SC_CHECK_MPI (mpiret);
return 0;
}
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