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Source: pairtools
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Antoni Villalonga <antoni@friki.cat>
Build-Depends: debhelper-compat (= 13),
dh-python,
python3-all-dev,
python3-all-dbg,
cython3,
cython3-dbg,
python3-setuptools,
python3-click,
python3-numpy,
python3-sphinx-click,
Standards-Version: 4.5.0
Homepage: https://github.com/mirnylab/pairtools
Vcs-Browser: https://salsa.debian.org/med-team/pairtools
Vcs-Git: https://salsa.debian.org/med-team/pairtools.git
Rules-Requires-Root: no
Package: python3-pairtools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
Description: Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Package: python3-pairtools-dbg
Architecture: any
Section: debug
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
python3-pairtools (= ${binary:Version})
Description: Process sequencing data from a Hi-C experiment (debug build)
Debug files for python3-pairtools, a simple and fast command-line framework to
process sequencing data from a Hi-C experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Package: python3-pairtools-examples
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
Enhances: python3-pairtools
Description: Process sequencing data from a Hi-C experiment (examples)
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
.
This package contains some examples
|
