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Source: pairtools
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Antoni Villalonga <antoni@friki.cat>
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
architecture-is-64-bit,
python3-all-dev,
pybuild-plugin-pyproject,
cython3,
python-is-python3,
python3-setuptools,
python3-bioframe,
python3-click,
python3-exceptiongroup,
python3-numpy,
python3-pandas,
python3-pysam (>= 0.20.0+ds-3~),
python3-pytest <!nocheck>,
python3-standard-pipes,
python3-scipy,
libhts-dev,
python3-yaml <!nocheck>
Standards-Version: 4.7.0
Homepage: https://github.com/mirnylab/pairtools
Vcs-Browser: https://salsa.debian.org/med-team/pairtools
Vcs-Git: https://salsa.debian.org/med-team/pairtools.git
Rules-Requires-Root: no
Package: python3-pairtools
Architecture: any
Depends:
python3-standard-pipes,
${shlibs:Depends},
${misc:Depends},
${python3:Depends},
Suggests: python3-pairtools-examples (>= 1.0.2)
Description: Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Package: python3-pairtools-examples
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
Enhances: python3-pairtools
Breaks: python3-pairtools (<< 1.0.2)
Replaces: python3-pairtools (<< 1.0.2)
Multi-Arch: same
Description: Process sequencing data from a Hi-C experiment (examples)
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
.
This package contains some examples
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