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|
seqfile = D:\A\MySoft\paml4.6\examples\lysozyme\lysozymeSmall.nuc
treefile = D:\A\MySoft\paml4.6\examples\lysozyme\lysozymeSmall.trees
outfile = mlc
noisy = 9
verbose = 1
runmode = 0
seqtype = 1
CodonFreq = 0
ndata = 1
clock = 0
aaDist = 0
model = 2
NSsites = 0
icode = 0
Mgene = 0
fix_kappa = 0
kappa = 2
fix_omega = 0
omega = 0.4
fix_alpha = 1
alpha = 0
Malpha = 0
ncatG = 8
getSE = 0
RateAncestor = 0
Small_Diff = .5e-6
cleandata = 0
method = 1
|
