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#!/usr/bin/make -f
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
DATADIR=/usr/lib/paml/data
%:
dh $@ --sourcedirectory=src
override_dh_installexamples:
dh_installexamples
for d in `find debian -name examples -a -type d`; do \
find $$d \! -type d | xargs -r chmod -x ; \
done
override_dh_install-arch:
dh_install -a
for datfile in debian/$(DEB_SOURCE)/$(DATADIR)/*.ctl ; do \
for item in seqfile treefile ; do \
sed -i -e "s?\($${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 $(DATADIR)/\2?" \
-e "s?\($${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 $(DATADIR)/\2?" \
$${datfile} ; \
done ; \
done
sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1$(DATADIR)/\2?' debian/$(DEB_SOURCE)/$(DATADIR)/codeml.ctl
override_dh_link-arch:
dh_link -a
mkdir -p debian/$(DEB_SOURCE)/etc/$(DEB_SOURCE)/
for datfile in debian/$(DEB_SOURCE)/$(DATADIR)/*.ctl ; do \
ln -s $(DATADIR)/`basename $${datfile}` debian/$(DEB_SOURCE)/etc/$(DEB_SOURCE) ; \
done
override_dh_fixperms-arch:
dh_fixperms -a
find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \;
override_dh_auto_clean:
dh_auto_clean
rm -f src/baseml src/basemlg src/chi2 src/codeml src/evolver src/infinitesites src/mcmctree src/pamp src/yn00
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