This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by Parafly configure 0.1, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  $ ./configure --prefix=/Users/bhaas/GIT/parafly

## --------- ##
## Platform. ##
## --------- ##

hostname = vpn5-214.broadinstitute.org
uname -m = x86_64
uname -r = 11.4.2
uname -s = Darwin
uname -v = Darwin Kernel Version 11.4.2: Thu Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64

/usr/bin/uname -p = i386
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = Mach kernel version:
	 Darwin Kernel Version 11.4.2: Thu Aug 23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64
Kernel configured for up to 8 processors.
4 processors are physically available.
8 processors are logically available.
Processor type: i486 (Intel 80486)
Processors active: 0 1 2 3 4 5 6 7
Primary memory available: 8.00 gigabytes
Default processor set: 146 tasks, 870 threads, 8 processors
Load average: 1.23, Mach factor: 6.76
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /opt/local/bin
PATH: /opt/local/sbin
PATH: /opt/local/bin
PATH: /opt/local/sbin
PATH: /sw/bin
PATH: /sw/sbin
PATH: /Users/bhaas/CVS/PASA/misc_utilities/
PATH: /usr/local/bin
PATH: /Users/bhaas/utilities
PATH: /Users/bhaas/BIN
PATH: /usr/local/mysql/bin
PATH: /opt/local/bin/
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /usr/local/bin
PATH: /usr/X11/bin
PATH: /usr/local/ncbi/blast/bin
PATH: /usr/texbin
PATH: /Users/bhaas/BioIfx/Bowtie/current/
PATH: /Users/bhaas/BioIfx/TopHat/current/
PATH: /Users/bhaas/BioIfx/GMAP_09282007/bin
PATH: /usr/local/Cellar/sbt/0.12.0/bin/
PATH: /usr/X11R6/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1852: checking for a BSD-compatible install
configure:1920: result: /usr/bin/install -c
configure:1931: checking whether build environment is sane
configure:1981: result: yes
configure:2122: checking for a thread-safe mkdir -p
configure:2161: result: ./install-sh -c -d
configure:2174: checking for gawk
configure:2204: result: no
configure:2174: checking for mawk
configure:2204: result: no
configure:2174: checking for nawk
configure:2204: result: no
configure:2174: checking for awk
configure:2190: found /usr/bin/awk
configure:2201: result: awk
configure:2212: checking whether make sets $(MAKE)
configure:2234: result: yes
configure:2378: checking for g++
configure:2394: found /usr/local/bin/g++
configure:2405: result: g++
configure:2432: checking for C++ compiler version
configure:2441: g++ --version >&5
g++ (GCC) 4.4.7
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2452: $? = 0
configure:2441: g++ -v >&5
Using built-in specs.
Target: x86_64-apple-darwin11.2.0
Configured with: ../gcc-4.4.7/configure
Thread model: posix
gcc version 4.4.7 (GCC) 
configure:2452: $? = 0
configure:2441: g++ -V >&5
g++: '-V' option must have argument
configure:2452: $? = 1
configure:2441: g++ -qversion >&5
g++: unrecognized option '-qversion'
g++: no input files
configure:2452: $? = 1
configure:2472: checking whether the C++ compiler works
configure:2494: g++    conftest.cpp  >&5
configure:2498: $? = 0
configure:2546: result: yes
configure:2549: checking for C++ compiler default output file name
configure:2551: result: a.out
configure:2557: checking for suffix of executables
configure:2564: g++ -o conftest    conftest.cpp  >&5
configure:2568: $? = 0
configure:2590: result: 
configure:2612: checking whether we are cross compiling
configure:2620: g++ -o conftest    conftest.cpp  >&5
configure:2624: $? = 0
configure:2631: ./conftest
configure:2635: $? = 0
configure:2650: result: no
configure:2655: checking for suffix of object files
configure:2677: g++ -c   conftest.cpp >&5
configure:2681: $? = 0
configure:2702: result: o
configure:2706: checking whether we are using the GNU C++ compiler
configure:2725: g++ -c   conftest.cpp >&5
configure:2725: $? = 0
configure:2734: result: yes
configure:2743: checking whether g++ accepts -g
configure:2763: g++ -c -g  conftest.cpp >&5
configure:2763: $? = 0
configure:2804: result: yes
configure:2838: checking for style of include used by make
configure:2866: result: GNU
configure:2892: checking dependency style of g++
configure:3003: result: gcc3
configure:3030: checking for library containing cos
configure:3061: g++ -o conftest -g -O2   conftest.cpp  >&5
configure:3061: $? = 0
configure:3078: result: none required
configure:3220: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by Parafly config.status 0.1, which was
generated by GNU Autoconf 2.68.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on vpn5-214.broadinstitute.org

config.status:849: creating Makefile
config.status:849: creating src/Makefile
config.status:849: creating config.h
config.status:1078: executing depfiles commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_cos='none required'
am_cv_CXX_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /Users/bhaas/GIT/parafly/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_CXXFLAGS='-pedantic -fopenmp -Wall -Wextra -Wno-long-long -Wno-deprecated -m64'
AUTOCONF='${SHELL} /Users/bhaas/GIT/parafly/missing --run autoconf'
AUTOHEADER='${SHELL} /Users/bhaas/GIT/parafly/missing --run autoheader'
AUTOMAKE='${SHELL} /Users/bhaas/GIT/parafly/missing --run automake-1.11'
AWK='awk'
CPPFLAGS=''
CXX='g++'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
ECHO_C='\c'
ECHO_N=''
ECHO_T=''
EXEEXT=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /Users/bhaas/GIT/parafly/missing --run makeinfo'
MKDIR_P='./install-sh -c -d'
OBJEXT='o'
PACKAGE='parafly'
PACKAGE_BUGREPORT='bug-report@address'
PACKAGE_NAME='Parafly'
PACKAGE_STRING='Parafly 0.1'
PACKAGE_TARNAME='parafly'
PACKAGE_URL=''
PACKAGE_VERSION='0.1'
PATH_SEPARATOR=':'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
VERSION='0.1'
ac_ct_CXX='g++'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /Users/bhaas/GIT/parafly/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(top_builddir)/./install-sh -c -d'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/Users/bhaas/GIT/parafly'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "Parafly"
#define PACKAGE_TARNAME "parafly"
#define PACKAGE_VERSION "0.1"
#define PACKAGE_STRING "Parafly 0.1"
#define PACKAGE_BUGREPORT "bug-report@address"
#define PACKAGE_URL ""
#define PACKAGE "parafly"
#define VERSION "0.1"

configure: exit 0