This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by Parafly configure 0.1, which was
generated by GNU Autoconf 2.63.  Invocation command line was

  $ ./configure --prefix=/home/unix/bhaas/GITHUB/ParaFly

## --------- ##
## Platform. ##
## --------- ##

hostname = delanatii.broadinstitute.org
uname -m = x86_64
uname -r = 2.6.32-696.3.2.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Wed Jun 7 11:51:39 EDT 2017

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /seq/RNASEQ/FIRECLOUD/GCLOUD/google-cloud-sdk/bin
PATH: /home/unix/bhaas/utilities/emboss
PATH: .
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/python_2.7.1-sqlite3-rtrees/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/zlib_1.2.6/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/hdf5_1.8.9/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/graphviz_2.28.0/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/db_4.7.25/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/tcltk8.5.9/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/emacs_24.5/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/subversion_1.7.2/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/neon_0.29.3/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/sqlite_3.7.17/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/hmmer_3.1/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/mysql_5.6.20/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/git_1.8.5.6/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/jdk1.8.0_121/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/ncbi-blast_2.2.30+-x86_64/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/perl_5.8.9/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/dbd-oracle_1.23-perl-5.8.9-oracle-instantclient-10.2.0.4.0/bin
PATH: /broad/software/nonfree/Linux/redhat_6_x86_64/pkgs/oracle_instantclient-10.2.0.4.0/instantclient_10_2
PATH: /broad/uge/8.5.3/bin/lx-amd64
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/imagemagick_6.9.0-5/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/genetorrent_download-3.8.7/cghub/bin
PATH: /broad/software/free/Linux/redhat_6_x86_64/pkgs/netcdf_4.0.1/bin
PATH: /home/unix/bhaas/utilities
PATH: /home/unix/bhaas/GITHUB/pasapipeline/misc_utilities/
PATH: /home/unix/bhaas/bin
PATH: /seq/regev_genome_portal/SOFTWARE/SRA_TOOLKIT/sratoolkit.2.5.1-centos_linux64/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /sbin
PATH: /seq/regev_genome_portal/SOFTWARE/OpenMPI/openmpi-1.6.5/bin
PATH: /home/unix/bhaas/GITHUB/Trinity_CTAT/fusion
PATH: /home/unix/bhaas/GITHUB/trinityrnaseq
PATH: /home/unix/bhaas/.firecloud-cli/ubin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1831: checking for a BSD-compatible install
configure:1899: result: /broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/install -c
configure:1910: checking whether build environment is sane
configure:1970: result: yes
configure:2111: checking for a thread-safe mkdir -p
configure:2150: result: /broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/mkdir -p
configure:2163: checking for gawk
configure:2179: found /bin/gawk
configure:2190: result: gawk
configure:2201: checking whether make sets $(MAKE)
configure:2223: result: yes
configure:2369: checking for g++
configure:2385: found /broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0/bin/g++
configure:2396: result: g++
configure:2423: checking for C++ compiler version
configure:2431: g++ --version >&5
g++ (GCC) 5.1.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2435: $? = 0
configure:2442: g++ -v >&5
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0/libexec/gcc/x86_64-redhat-linux/5.1.0/lto-wrapper
Target: x86_64-redhat-linux
Configured with: /tmp/redhat_6_x86_64/build/tmp/gcc-5.1.0/configure --prefix=/broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0 --enable-lto --with-cloog --enable-plugins --enable-languages=c,c++,objc,obj-c++,fortran --build=x86_64-redhat-linux --disable-multilib --with-gmp=/broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0 --with-mpfr=/broad/software/free/Linux/redhat_6_x86_64/pkgs/gcc_5.1.0
Thread model: posix
gcc version 5.1.0 (GCC) 
configure:2446: $? = 0
configure:2453: g++ -V >&5
g++: error: unrecognized command line option '-V'
g++: fatal error: no input files
compilation terminated.
configure:2457: $? = 1
configure:2480: checking for C++ compiler default output file name
configure:2502: g++    conftest.cpp  >&5
configure:2506: $? = 0
configure:2544: result: a.out
configure:2563: checking whether the C++ compiler works
configure:2573: ./a.out
configure:2577: $? = 0
configure:2596: result: yes
configure:2603: checking whether we are cross compiling
configure:2605: result: no
configure:2608: checking for suffix of executables
configure:2615: g++ -o conftest    conftest.cpp  >&5
configure:2619: $? = 0
configure:2645: result: 
configure:2651: checking for suffix of object files
configure:2677: g++ -c   conftest.cpp >&5
configure:2681: $? = 0
configure:2706: result: o
configure:2710: checking whether we are using the GNU C++ compiler
configure:2739: g++ -c   conftest.cpp >&5
configure:2746: $? = 0
configure:2763: result: yes
configure:2772: checking whether g++ accepts -g
configure:2802: g++ -c -g  conftest.cpp >&5
configure:2809: $? = 0
configure:2910: result: yes
configure:2944: checking for style of include used by make
configure:2972: result: GNU
configure:2997: checking dependency style of g++
configure:3107: result: gcc3
configure:3134: checking for library containing cos
configure:3175: g++ -o conftest -g -O2   conftest.cpp  >&5
configure:3182: $? = 0
configure:3213: result: none required
configure:3349: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by Parafly config.status 0.1, which was
generated by GNU Autoconf 2.63.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on delanatii.broadinstitute.org

config.status:760: creating Makefile
config.status:760: creating src/Makefile
config.status:760: creating config.h
config.status:982: config.h is unchanged
config.status:1034: executing depfiles commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_objext=o
ac_cv_path_install='/broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/install -c'
ac_cv_path_mkdir=/broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_cos='none required'
am_cv_CXX_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run aclocal-1.11'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run tar'
AM_CXXFLAGS='-pedantic -fopenmp -Wall -Wextra -Wno-long-long -Wno-deprecated -m64'
AUTOCONF='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run autoconf'
AUTOHEADER='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run autoheader'
AUTOMAKE='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run automake-1.11'
AWK='gawk'
CPPFLAGS=''
CXX='g++'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EXEEXT=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/missing --run makeinfo'
MKDIR_P='/broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/mkdir -p'
OBJEXT='o'
PACKAGE='parafly'
PACKAGE_BUGREPORT='bug-report@address'
PACKAGE_NAME='Parafly'
PACKAGE_STRING='Parafly 0.1'
PACKAGE_TARNAME='parafly'
PACKAGE_VERSION='0.1'
PATH_SEPARATOR=':'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
VERSION='0.1'
ac_ct_CXX='g++'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /home/unix/bhaas/GITHUB/ParaFly/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/broad/software/free/Linux/redhat_6_x86_64/pkgs/coreutils_8.22/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/unix/bhaas/GITHUB/ParaFly'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "Parafly"
#define PACKAGE_TARNAME "parafly"
#define PACKAGE_VERSION "0.1"
#define PACKAGE_STRING "Parafly 0.1"
#define PACKAGE_BUGREPORT "bug-report@address"
#define PACKAGE "parafly"
#define VERSION "0.1"

configure: exit 0