1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
|
/*****************************************************************************
*
* Copyright (c) 2000 - 2010, Lawrence Livermore National Security, LLC
* Produced at the Lawrence Livermore National Laboratory
* LLNL-CODE-400124
* All rights reserved.
*
* This file is part of VisIt. For details, see https://visit.llnl.gov/. The
* full copyright notice is contained in the file COPYRIGHT located at the root
* of the VisIt distribution or at http://www.llnl.gov/visit/copyright.html.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* - Redistributions of source code must retain the above copyright notice,
* this list of conditions and the disclaimer below.
* - Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the disclaimer (as noted below) in the
* documentation and/or other materials provided with the distribution.
* - Neither the name of the LLNS/LLNL nor the names of its contributors may
* be used to endorse or promote products derived from this software without
* specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL LAWRENCE LIVERMORE NATIONAL SECURITY,
* LLC, THE U.S. DEPARTMENT OF ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY
* DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
* DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
* SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
* CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
* LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
* OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
* DAMAGE.
*
*****************************************************************************/
#include <ProteinDataBankPluginInfo.h>
#include <avtProteinDataBankFileFormat.h>
#include <avtSTSDFileFormatInterface.h>
#include <avtGenericDatabase.h>
#include <avtProteinDataBankOptions.h>
// ****************************************************************************
// Method: ProteinDataBankCommonPluginInfo::GetDatabaseType
//
// Purpose:
// Returns the type of a ProteinDataBank database.
//
// Programmer: generated by xml2info
// Creation: omitted
//
// ****************************************************************************
DatabaseType
ProteinDataBankCommonPluginInfo::GetDatabaseType()
{
return DB_TYPE_STSD;
}
// ****************************************************************************
// Method: ProteinDataBankCommonPluginInfo::SetupDatabase
//
// Purpose:
// Sets up a ProteinDataBank database.
//
// Arguments:
// list A list of file names.
// nList The number of timesteps in list.
// nBlocks The number of blocks in the list.
//
// Returns: A ProteinDataBank database from list.
//
// Programmer: generated by xml2info
// Creation: omitted
//
// ****************************************************************************
avtDatabase *
ProteinDataBankCommonPluginInfo::SetupDatabase(const char *const *list,
int nList, int nBlock)
{
int nTimestep = nList / nBlock;
avtSTSDFileFormat ***ffl = new avtSTSDFileFormat**[nTimestep];
for (int i = 0 ; i < nTimestep ; i++)
{
ffl[i] = new avtSTSDFileFormat*[nBlock];
for (int j = 0 ; j < nBlock ; j++)
{
ffl[i][j] = new avtProteinDataBankFileFormat(list[i*nBlock + j], readOptions);
}
}
avtSTSDFileFormatInterface *inter
= new avtSTSDFileFormatInterface(ffl, nTimestep, nBlock);
return new avtGenericDatabase(inter);
}
// ****************************************************************************
// Method: ProteinDataBankCommonPluginInfo::GetReadOptions
//
// Purpose:
// Gets the read options.
//
// Programmer: generated by xml2info
// Creation: omitted
//
// ****************************************************************************
DBOptionsAttributes *
ProteinDataBankCommonPluginInfo::GetReadOptions() const
{
return GetProteinDataBankReadOptions();
}
// ****************************************************************************
// Method: ProteinDataBankCommonPluginInfo::GetWriteOptions
//
// Purpose:
// Gets the write options.
//
// Programmer: generated by xml2info
// Creation: omitted
//
// ****************************************************************************
DBOptionsAttributes *
ProteinDataBankCommonPluginInfo::GetWriteOptions() const
{
return GetProteinDataBankWriteOptions();
}
|
