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/*=========================================================================
Program: Visualization Toolkit
Module: vtkOpenFOAMReader.cxx
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
// Thanks to Terry Jordan (terry.jordan@sa.netl.doe.gov) of SAIC
// at the National Energy Technology Laboratory who originally developed this class.
//
// --------
// Takuya Oshima of Niigata University, Japan (oshima@eng.niigata-u.ac.jp)
// provided the major bulk of improvements (rewrite) that made the reader
// truly functional.
//
// Token-based FoamFile format lexer/parser,
// performance/stability/compatibility enhancements, gzipped file
// support, lagrangian field support, variable timestep support,
// builtin cell-to-point filter, pointField support, polyhedron
// decomposition support, multiregion support,
// parallelization support for
// decomposed cases in conjunction with vtkPOpenFOAMReader etc.
//
// --------
// Philippose Rajan (sarith@rocketmail.com)
// provided various adjustments
//
// * GUI Based selection of mesh regions and fields available in the case
// * Minor bug fixes / Strict memory allocation checks
// * Minor performance enhancements
//
// --------
// Mark Olesen (OpenCFD Ltd.) www.openfoam.com
// provided various bugfixes, improvements, cleanup
//
// ---------------------------------------------------------------------------
//
// Bugs or support questions should be addressed to the discourse forum
// https://discourse.paraview.org/ and/or KitWare
//
// ---------------------------------------------------------------------------
// OpenFOAM mesh files (serial), located under constant/polyMesh/
//
// https://www.openfoam.com/documentation/user-guide/mesh-description.php
//
// - points (type: vectorField)
// * x,y,z values
//
// - faces (type: faceList or faceCompactList)
// * a list of list of nodes.
// Either stored as such, or as offsets and content
//
// - owner (type: labelList)
// * the 'owner' cell for each face.
//
// - neighbour (type: labelList)
// * for 'neighbour' cell for each internal face.
//
// - boundary (type: polyBoundaryMesh)
// * list of patches with startFace/nFaces for external boundary regions
//
// The owner cell always has a lower number than neighbour.
// The face points outwards from owner to neighbour.
//
// To construct the internal (volume) mesh
// - require points, faces, owner/neighbour.
// Construct cells from owner/neighbour + faces.
//
// To construct the boundary mesh
// - require points, faces.
// The owners from the boundary faces are size (owner_list - neighbour_list).
//
// To construct cell zones, cell sets
// - similar requirements as internal mesh
//
// To construct face zones, face sets
// - require points, faces, owners
//
// To construct point zones, point sets
// - require points only
//
// ---------------------------------------------------------------------------
// Patch/mesh selection naming
// single region:
// - internalMesh
// - group/...
// - patch/...
// - lagrangian/...
//
// multi-region:
// - /regionName/internalMesh
// - /regionName/group/...
// - /regionName/patch/...
// - /regionName/lagrangian/...
//
// Prefixed with "/regionName/" to provide unambiguous names. For example,
// - "lagrangian/..." (lagrangian on default region)
// - "/lagrangian/..." (mesh region called 'lagrangian' - silly, but accept)
//
// ---------------------------------------------------------------------------
// Hijack the CRC routine of zlib to omit CRC check for gzipped files
// (on OSes other than Windows where the mechanism doesn't work due
// to pre-bound DLL symbols) if set to 1, or not (set to 0). Affects
// performance by about 3% - 4%.
#define VTK_FOAMFILE_OMIT_CRCCHECK 0
// The input/output buffer sizes for zlib in bytes.
#define VTK_FOAMFILE_INBUFSIZE (16384)
#define VTK_FOAMFILE_OUTBUFSIZE (131072)
#define VTK_FOAMFILE_INCLUDE_STACK_SIZE (10)
#if defined(_MSC_VER)
#define _CRT_SECURE_NO_WARNINGS 1
// No strtoll on msvc:
#define strtoll _strtoi64
#endif
#if VTK_FOAMFILE_OMIT_CRCCHECK
#define ZLIB_INTERNAL
#endif
// For possible future extension of linehead-aware directives
#define VTK_FOAMFILE_RECOGNIZE_LINEHEAD 0
// List time directories according to system/controlDict
#define VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT 1
// Ignore things like 'U_0' restart files.
// This could also be made part of the GUI properties
#define VTK_FOAMFILE_IGNORE_FIELD_RESTART 1
// Support for finiteArea
#define VTK_FOAMFILE_FINITE_AREA 0
// Support extra decomposition of polyhedral cells
#define VTK_FOAMFILE_DECOMPOSE_POLYHEDRA 1
//------------------------------------------------------------------------------
// Developer option to debug the reader states
#define VTK_FOAMFILE_DEBUG 0
// Similar to vtkErrorMacro etc.
#if VTK_FOAMFILE_DEBUG
#define vtkFoamDebug(x) \
do \
{ \
std::cerr << "" x; \
} while (false)
#else
#define vtkFoamDebug(x) \
do \
{ \
} while (false)
#endif // VTK_FOAMFILE_DEBUG
//------------------------------------------------------------------------------
#include "vtkOpenFOAMReader.h"
#include "vtk_zlib.h"
#include "vtksys/RegularExpression.hxx"
#include "vtksys/SystemTools.hxx"
#include "vtkAssume.h"
#include "vtkCellArray.h"
#include "vtkCellData.h"
#include "vtkCharArray.h"
#include "vtkCollection.h"
#include "vtkDataArraySelection.h"
#include "vtkDirectory.h"
#include "vtkDoubleArray.h"
#include "vtkFloatArray.h"
#include "vtkHexahedron.h"
#include "vtkInformation.h"
#include "vtkInformationVector.h"
#include "vtkIntArray.h"
#include "vtkMultiBlockDataSet.h"
#include "vtkObjectFactory.h"
#include "vtkPointData.h"
#include "vtkPoints.h"
#include "vtkPolyData.h"
#include "vtkPolygon.h"
#include "vtkPolyhedron.h"
#include "vtkPyramid.h"
#include "vtkQuad.h"
#include "vtkSmartPointer.h"
#include "vtkSortDataArray.h"
#include "vtkStreamingDemandDrivenPipeline.h"
#include "vtkStringArray.h"
#include "vtkTetra.h"
#include "vtkTriangle.h"
#include "vtkTypeInt32Array.h"
#include "vtkTypeInt64Array.h"
#include "vtkTypeInt8Array.h"
#include "vtkTypeTraits.h"
#include "vtkTypeUInt8Array.h"
#include "vtkUnstructuredGrid.h"
#include "vtkVertex.h"
#include "vtkWedge.h"
#if !(defined(_WIN32) && !defined(__CYGWIN__) || defined(__LIBCATAMOUNT__))
#include <pwd.h> // For getpwnam(), getpwuid()
#include <sys/types.h>
#include <unistd.h> // For getuid()
#endif
#include <algorithm>
#include <cctype> // For isalnum(), isdigit(), isspace()
#include <cmath> // For abs()
#include <map>
#include <memory>
#include <set>
#include <sstream>
#include <typeinfo>
#include <unordered_map>
#include <unordered_set>
#include <utility>
#include <vector>
#if VTK_FOAMFILE_OMIT_CRCCHECK
VTK_ABI_NAMESPACE_BEGIN
uLong ZEXPORT crc32(uLong, const Bytef*, uInt)
{
return 0;
}
VTK_ABI_NAMESPACE_END
#endif
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
VTK_ABI_NAMESPACE_BEGIN
vtkStandardNewMacro(vtkOpenFOAMReader);
#if VTK_FOAMFILE_FINITE_AREA
// The name for finiteArea mesh
static constexpr const char* const NAME_AREAMESH = "areaMesh";
#endif
// The name for finiteVolume internal mesh (unzoned)
static constexpr const char* const NAME_INTERNALMESH = "internalMesh";
// Index is "constant" time
static constexpr int TIMEINDEX_CONSTANT = -1;
// Index has not been visited
static constexpr int TIMEINDEX_UNVISITED = -2;
//------------------------------------------------------------------------------
// Local Functions
namespace
{
// True if data array uses 64-bit representation for its storage
bool Is64BitArray(const vtkDataArray* array)
{
return (array && array->GetElementComponentSize() == 8);
}
// Given a data array and a flag indicating whether 64 bit labels are used,
// lookup and return a single element in the array. The data array must
// be either a vtkTypeInt32Array or vtkTypeInt64Array.
vtkTypeInt64 GetLabelValue(const vtkDataArray* array, vtkIdType idx, bool use64BitLabels)
{
if (!use64BitLabels)
{
vtkTypeInt64 result =
static_cast<vtkTypeInt64>(static_cast<const vtkTypeInt32Array*>(array)->GetValue(idx));
assert(result >= -1); // some arrays store -1 == 'uninitialized'.
return result;
}
else
{
vtkTypeInt64 result = static_cast<const vtkTypeInt64Array*>(array)->GetValue(idx);
assert(result >= -1); // some arrays store -1 == 'uninitialized'.
return result;
}
}
// Setter analogous to the above getter.
void SetLabelValue(vtkDataArray* array, vtkIdType idx, vtkTypeInt64 value, bool use64BitLabels)
{
if (!use64BitLabels)
{
assert(static_cast<vtkTypeInt32>(value) >= 0);
static_cast<vtkTypeInt32Array*>(array)->SetValue(idx, static_cast<vtkTypeInt32>(value));
}
else
{
assert(value >= 0);
static_cast<vtkTypeInt64Array*>(array)->SetValue(idx, value);
}
}
// Another helper for appending an id to a list
void AppendLabelValue(vtkDataArray* array, vtkTypeInt64 val, bool use64BitLabels)
{
if (!use64BitLabels)
{
assert(static_cast<vtkTypeInt32>(val) >= 0);
static_cast<vtkTypeInt32Array*>(array)->InsertNextValue(static_cast<vtkTypeInt32>(val));
}
else
{
assert(val >= 0);
static_cast<vtkTypeInt64Array*>(array)->InsertNextValue(val);
}
}
// Append unique string to list
void appendUniq(vtkStringArray* list, vtkStringArray* items)
{
for (int i = 0; i < items->GetNumberOfTuples(); ++i)
{
std::string& str = items->GetValue(i);
if (list->LookupValue(str) == -1)
{
list->InsertNextValue(str);
}
}
}
// Tuple remapping for symmTensor ordering
// OpenFOAM [XX XY XZ YY YZ ZZ]
// VTK uses [XX YY ZZ XY YZ XZ]
template <typename T>
void remapFoamSymmTensor(T data[])
{
std::swap(data[1], data[3]); // swap XY <-> YY
std::swap(data[2], data[5]); // swap XZ <-> ZZ
}
// Generic tuple remapping is a no-op
template <bool symmTensor, typename T>
void remapFoamTuple(T[])
{
}
// Remapping for symmTensor (float)
template <>
void remapFoamTuple<true>(float data[])
{
::remapFoamSymmTensor(data);
}
// Remapping for symmTensor (double)
template <>
void remapFoamTuple<true>(double data[])
{
::remapFoamSymmTensor(data);
}
} // End anonymous namespace
//------------------------------------------------------------------------------
// Forward Declarations
struct vtkFoamDict;
struct vtkFoamEntry;
struct vtkFoamEntryValue;
struct vtkFoamFile;
struct vtkFoamIOobject;
struct vtkFoamToken;
//------------------------------------------------------------------------------
// class vtkFoamError
// for exception-carrying object or general place to collect errors
struct vtkFoamError : public std::string
{
vtkFoamError& operator<<(const std::string& str)
{
this->std::string::operator+=(str);
return *this;
}
vtkFoamError& operator<<(const char* str)
{
this->std::string::operator+=(str);
return *this;
}
template <class T>
vtkFoamError& operator<<(const T& val)
{
std::ostringstream os;
os << val;
this->std::string::operator+=(os.str());
return *this;
}
};
//------------------------------------------------------------------------------
// Some storage containers
// Manage a list of pointers
template <typename T>
struct vtkFoamPtrList : public std::vector<T*>
{
private:
typedef std::vector<T*> Superclass;
// Plain 'delete' each entry
void DeleteAll()
{
for (T* ptr : *this)
{
delete ptr;
}
}
public:
// Inherit all constructors
using std::vector<T*>::vector;
// Default construct
vtkFoamPtrList() = default;
// No copy construct/assignment
vtkFoamPtrList(const vtkFoamPtrList&) = delete;
void operator=(const vtkFoamPtrList&) = delete;
// Destructor - delete each entry
~vtkFoamPtrList() { DeleteAll(); }
// Remove top element, deleting its pointer
void remove_back()
{
if (!Superclass::empty())
{
delete Superclass::back();
Superclass::pop_back();
}
}
// Clear list, delete all elements
void clear()
{
DeleteAll();
Superclass::clear();
}
};
// Manage a list of vtkDataObject pointers
template <typename ObjectT>
struct vtkFoamDataArrayVector : public std::vector<ObjectT*>
{
private:
typedef std::vector<ObjectT*> Superclass;
// Invoke vtkDataObject Delete() on each (non-null) entry
void DeleteAll()
{
for (ObjectT* ptr : *this)
{
if (ptr)
{
ptr->Delete();
}
}
}
public:
// Destructor - invoke vtkDataObject Delete() on each entry
~vtkFoamDataArrayVector() { DeleteAll(); }
// Remove top element, invoking vtkDataObject Delete() on it
void remove_back()
{
if (!Superclass::empty())
{
ObjectT* ptr = Superclass::back();
if (ptr)
{
ptr->Delete();
}
Superclass::pop_back();
}
}
// Clear list, invoking vtkDataObject Delete() on each element
void clear()
{
DeleteAll();
Superclass::clear();
}
};
// Forward Declarations
typedef vtkFoamDataArrayVector<vtkDataArray> vtkFoamLabelArrayVector;
//------------------------------------------------------------------------------
// A std::vector-like data structure where the data
// lies on the stack. If the requested size in the
// resize method is larger than N, the class allocates
// the array on the heap.
//
// Unlike std::vector, the array is not default initialized
// and behaves more like std::array in that manner.
//
// Since this simple structure is largely used for scratch space,
// it allocates on growth, but not on shrinking.
// It has both copying and non-copying reserve/resize methods.
template <typename T, size_t N = 2 * 64 / sizeof(T)>
struct vtkFoamStackVector
{
typedef T value_type;
/**
* Default construct, zero length and default capacity
*/
vtkFoamStackVector() = default;
/**
* Construct with specified length
*/
explicit vtkFoamStackVector(std::size_t len) { this->fast_resize(len); }
~vtkFoamStackVector()
{
if (ptr != stck)
{
delete[] ptr;
}
}
bool empty() const noexcept { return !size_; }
std::size_t size() const noexcept { return size_; }
std::size_t capacity() const noexcept { return capacity_; }
T* data() noexcept { return ptr; }
const T* data() const noexcept { return ptr; }
T* begin() noexcept { return ptr; }
T* end() noexcept { return (ptr + size_); }
const T* begin() const noexcept { return ptr; }
const T* end() const noexcept { return (ptr + size_); }
T& operator[](std::size_t pos) { return ptr[pos]; }
const T& operator[](std::size_t pos) const { return ptr[pos]; }
// Reserve space, retaining old values on growth. Uses doubling strategy.
void copy_reserve(std::size_t len) { _reserve(len, false); }
// Resize, retaining old values on growth. Uses doubling strategy.
void copy_resize(std::size_t len)
{
_reserve(len, false);
size_ = len;
}
// Faster reserve space, may discard old values on growth. Uses doubling strategy.
void fast_reserve(std::size_t len) { _reserve(len, true); }
// Faster resize, may discard old values on growth. Uses doubling strategy.
void fast_resize(std::size_t len)
{
_reserve(len, true);
size_ = len;
}
private:
T stck[N];
T* ptr = stck;
std::size_t capacity_ = N;
std::size_t size_ = 0;
// Reserve space, using doubling strategy.
// Fast (non-copying) or copy/move old values on growth.
void _reserve(std::size_t len, bool fast)
{
if (capacity_ < len)
{
while (capacity_ < len)
{
capacity_ *= 2;
}
if (fast)
{
if (ptr != stck)
{
delete[] ptr;
}
ptr = new T[capacity_];
}
else
{
T* old = ptr;
ptr = new T[capacity_];
for (size_t i = 0; i < size_; ++i)
{
ptr[i] = std::move(old[i]);
}
if (old != stck)
{
delete[] old;
}
}
}
}
};
//------------------------------------------------------------------------------
// struct vtkFoamLabelListList - details in the implementation class
struct vtkFoamLabelListList
{
using CellType = vtkFoamStackVector<vtkTypeInt64>;
virtual ~vtkFoamLabelListList() = default;
virtual size_t GetLabelSize() const = 0; // in bytes
bool IsLabel64() const { return this->GetLabelSize() == 8; }
virtual vtkIdType GetNumberOfElements() const = 0;
virtual vtkDataArray* GetOffsetsArray() = 0;
virtual vtkDataArray* GetDataArray() = 0;
virtual void ResizeExact(vtkIdType numElem, vtkIdType numValues) = 0;
virtual void ResizeData(vtkIdType numValues) = 0;
// Fill offsets with zero
virtual void ResetOffsets() = 0;
virtual vtkTypeInt64 GetBeginOffset(vtkIdType i) const = 0;
virtual vtkTypeInt64 GetEndOffset(vtkIdType i) const = 0;
virtual vtkIdType GetSize(vtkIdType i) const = 0;
virtual void SetOffset(vtkIdType i, vtkIdType val) = 0;
virtual void IncrementOffset(vtkIdType i) = 0;
// Combine assignment of the new offset and accessing the data
virtual void* WritePointer(vtkIdType cellId, vtkIdType dataOffset, vtkIdType elemLength) = 0;
virtual vtkTypeInt64 GetValue(vtkIdType bodyIndex) const = 0;
virtual void SetValue(vtkIdType bodyIndex, vtkTypeInt64 val) = 0;
virtual vtkTypeInt64 GetValue(vtkIdType cellId, vtkIdType subIndex) const = 0;
virtual void SetValue(vtkIdType cellId, vtkIdType subIndex, vtkTypeInt64 val) = 0;
virtual void InsertValue(vtkIdType bodyIndex, vtkTypeInt64 val) = 0;
virtual void GetCell(vtkIdType i, CellType& cell) const = 0;
};
//------------------------------------------------------------------------------
// struct vtkFoamLabelListListImpl (implementation for vtkFoamLabelListList)
// This is roughly comparable to an OpenFOAM CompactListList and largely
// mirrors what the new vtkCellArray (2020: VTK_CELL_ARRAY_V2) now does.
// It contains packed data and a table of offsets
//
template <typename ArrayT>
struct vtkFoamLabelListListImpl : public vtkFoamLabelListList
{
private:
ArrayT* Offsets;
ArrayT* Data;
public:
using LabelArrayType = ArrayT;
using LabelType = typename ArrayT::ValueType;
// Default construct
vtkFoamLabelListListImpl()
: Offsets(LabelArrayType::New())
, Data(LabelArrayType::New())
{
}
// Construct a shallow copy from base class
explicit vtkFoamLabelListListImpl(const vtkFoamLabelListList& rhs)
: Offsets(nullptr)
, Data(nullptr)
{
assert("Require same element representation." && this->IsLabel64() == rhs.IsLabel64());
const auto& rhsCast = static_cast<const vtkFoamLabelListListImpl<LabelArrayType>&>(rhs);
this->Offsets = rhsCast.Offsets;
this->Data = rhsCast.Data;
this->Offsets->Register(nullptr); // ref count the copy
this->Data->Register(nullptr);
}
vtkFoamLabelListListImpl(const vtkFoamLabelListListImpl<ArrayT>& rhs)
: Offsets(rhs.Offsets)
, Data(rhs.Data)
{
this->Offsets->Register(nullptr); // ref count the copy
this->Data->Register(nullptr);
}
void operator=(const vtkFoamLabelListListImpl<ArrayT>&) = delete;
// Destructor
~vtkFoamLabelListListImpl() override
{
this->Offsets->Delete();
this->Data->Delete();
}
size_t GetLabelSize() const override { return sizeof(LabelType); }
vtkIdType GetNumberOfElements() const override { return this->Offsets->GetNumberOfTuples() - 1; }
vtkDataArray* GetOffsetsArray() override { return this->Offsets; }
vtkDataArray* GetDataArray() override { return this->Data; }
void ResizeExact(vtkIdType numElem, vtkIdType numValues) override
{
this->Offsets->SetNumberOfValues(numElem + 1);
this->Data->SetNumberOfValues(numValues);
this->Offsets->SetValue(0, 0);
}
void ResizeData(vtkIdType numValues) override { this->Data->Resize(numValues); }
void ResetOffsets() override { this->Offsets->FillValue(0); }
vtkTypeInt64 GetBeginOffset(vtkIdType i) const override { return this->Offsets->GetValue(i); }
vtkTypeInt64 GetEndOffset(vtkIdType i) const override { return this->Offsets->GetValue(i + 1); }
vtkIdType GetSize(vtkIdType i) const override
{
return this->Offsets->GetValue(i + 1) - this->Offsets->GetValue(i);
}
void SetOffset(vtkIdType i, vtkIdType val) override
{
this->Offsets->SetValue(i, static_cast<LabelType>(val));
}
void IncrementOffset(vtkIdType i) override
{
this->Offsets->SetValue(i, this->Offsets->GetValue(i) + 1);
}
void* WritePointer(vtkIdType cellId, vtkIdType dataOffset, vtkIdType subLength) override
{
return this->Data->WritePointer(*(this->Offsets->GetPointer(cellId)) = dataOffset, subLength);
}
vtkTypeInt64 GetValue(vtkIdType bodyIndex) const override
{
return this->Data->GetValue(bodyIndex);
}
void SetValue(vtkIdType bodyIndex, vtkTypeInt64 value) override
{
this->Data->SetValue(bodyIndex, static_cast<LabelType>(value));
}
vtkTypeInt64 GetValue(vtkIdType cellId, vtkIdType subIndex) const override
{
return this->Data->GetValue(this->Offsets->GetValue(cellId) + subIndex);
}
void SetValue(vtkIdType cellId, vtkIdType subIndex, vtkTypeInt64 value) override
{
this->Data->SetValue(this->Offsets->GetValue(cellId) + subIndex, static_cast<LabelType>(value));
}
void InsertValue(vtkIdType bodyIndex, vtkTypeInt64 value) override
{
this->Data->InsertValue(bodyIndex, value);
}
void GetCell(vtkIdType i, CellType& cell) const override
{
auto idx = this->Offsets->GetValue(i);
const auto last = this->Offsets->GetValue(i + 1);
cell.fast_resize(last - idx);
auto outIter = cell.begin();
while (idx != last)
{
*outIter = this->Data->GetValue(idx);
++outIter;
++idx;
}
}
};
// Forward Declarations
typedef vtkFoamLabelListListImpl<vtkTypeInt32Array> vtkFoamLabelListList32;
typedef vtkFoamLabelListListImpl<vtkTypeInt64Array> vtkFoamLabelListList64;
//------------------------------------------------------------------------------
// struct vtkFoamPatch
// A simple struct to hold OpenFOAM boundary patch information extracted
// from polyMesh/boundary. Similar to Foam::polyPatch
struct vtkFoamPatch
{
// General patch types (fits as vtkTypeInt8)
enum patchType
{
GEOMETRICAL = 0, // symmetryPlane, wedge, cyclic, empty, etc.
PHYSICAL = 1, // patch, wall
PROCESSOR = 2 // processor
};
std::string name_;
vtkIdType index_ = 0;
vtkIdType start_ = 0;
vtkIdType size_ = 0;
vtkIdType offset_ = 0; // The start-face offset into all boundaries
patchType type_ = patchType::GEOMETRICAL;
bool owner_ = true; // Patch owner (processor patch)
// The first patch face
vtkIdType startFace() const noexcept { return (this->start_); }
// One beyond the last patch face
vtkIdType endFace() const noexcept { return (this->start_ + this->size_); }
// The patch local face (as per OpenFOAM polyPatch)
vtkIdType whichFace(vtkIdType meshFacei) const { return (meshFacei - this->start_); }
};
//------------------------------------------------------------------------------
// struct vtkFoamBoundaries
// A collection of boundary patches with additional grouping and selection information
struct vtkFoamBoundaries : public std::vector<vtkFoamPatch>
{
// Collect and forwarding of errors (cannot use vtkErrorMacro here)
vtkFoamError error_;
// Patch groups, according to the inGroups keyword
std::map<std::string, std::vector<vtkIdType>> groups;
// Active patch groups
std::unordered_set<std::string> groupActive;
// Active patch indices, selected directly
std::unordered_set<vtkIdType> patchActive;
// Active patch indices, selected by group
std::unordered_set<vtkIdType> patchActiveByGroup;
// Reset group and patch selections
void clearSelections()
{
groupActive.clear();
patchActive.clear();
patchActiveByGroup.clear();
}
// Reset storage and errors, leaves timeName intact
void clearAll()
{
this->clear();
error_.clear();
groups.clear();
this->clearSelections();
}
const vtkFoamError& error() const noexcept { return error_; }
vtkFoamError& error() noexcept { return error_; }
// The start label of boundary faces in the polyMesh face list.
// Same as mesh nInternalFaces() if boundaries exist
vtkIdType startFace() const { return this->empty() ? 0 : this->front().startFace(); }
// One beyond the last boundary face
vtkIdType endFace() const { return this->empty() ? 0 : this->back().endFace(); }
void enablePatch(vtkIdType patchIndex) { patchActive.emplace(patchIndex); }
void enableGroup(const std::string& groupName)
{
auto citer = groups.find(groupName);
if (citer != groups.end())
{
const std::vector<vtkIdType>& patchIndices = citer->second;
for (const vtkIdType patchIndex : patchIndices)
{
patchActiveByGroup.emplace(patchIndex);
}
}
}
// True if given patch index is active
bool isActive(vtkIdType patchIndex) const
{
return (patchActive.find(patchIndex) != patchActive.end()) ||
(patchActiveByGroup.find(patchIndex) != patchActiveByGroup.end());
}
// Set contents from dictionary
// Return false on errors
bool update(const vtkFoamDict& dict);
// The patch index for a given face label, -1 for internal face or out-of-bounds
vtkIdType whichPatch(vtkIdType faceIndex) const;
};
//------------------------------------------------------------------------------
// struct vtkFoamZones
// A collection of names id-lists, used for OpenFOAM zones or sets.
// Stored as an unordered map instead of being ordered or a vector of items,
// since any ordering (like zones) will seen during input and managed with the
// VTK block structure.
//
// The idea is to maintain a list of ids (cell,face,point) in a cache that is
// separate from the mesh to allow flexible usage later.
// Also, it does not make any sense to have an entry like "CellId" in the CellData
// since that not only complicates handling, but is also quite misleading when local
// cell ids have been assembled from different processors.
struct vtkFoamZones
{
// Representation for the zone or set type
enum zoneType
{
UNKNOWN = 0, // placeholder
POINT = 1, // pointZone
FACE = 2, // faceZone
CELL = 3 // cellZone
};
// Collect and forwarding of errors (cannot use vtkErrorMacro here)
vtkFoamError error_;
// The {cell,face,point}Labels per zone
std::unordered_map<std::string, vtkSmartPointer<vtkIdList>> zones_;
// The zone type
zoneType type_ = zoneType::UNKNOWN;
// If zone map ids have content
bool empty() const { return zones_.empty(); }
// Reset storage and errors
void clearAll()
{
error_.clear();
zones_.clear();
}
// Clear and reset the zone type
void reset(enum zoneType ztype)
{
this->clearAll();
type_ = ztype;
}
const vtkFoamError& error() const noexcept { return error_; }
vtkFoamError& error() noexcept { return error_; }
// Find zone by name and return list of ids or nullptr on failure
vtkIdList* findZone(const std::string& zoneName)
{
auto iter = zones_.find(zoneName);
if (iter != zones_.end())
{
return iter->second;
}
return nullptr;
}
};
//------------------------------------------------------------------------------
// Simple handling of common OpenFOAM data types
struct vtkFoamTypes
{
// Primitive types, with nComponents encoded in lower 4 bits
enum dataType
{
NO_TYPE = 0,
SCALAR_TYPE = 1,
VECTOR_TYPE = 3,
SYMM_TENSOR_TYPE = 6,
TENSOR_TYPE = 9,
// Single-component types, but disambiguate from SCALAR_TYPE
BOOL_TYPE = (0x10 | SCALAR_TYPE),
LABEL_TYPE = (0x20 | SCALAR_TYPE),
SPH_TENSOR_TYPE = (0x30 | SCALAR_TYPE)
};
// The number of data components
static int GetNumberOfComponents(const dataType dtype) noexcept { return (dtype & 0xF); }
static bool IsGood(dataType dtype) noexcept { return dtype != NO_TYPE; }
static bool IsBool(dataType dtype) noexcept { return dtype == BOOL_TYPE; }
static bool IsLabel(dataType dtype) noexcept { return dtype == LABEL_TYPE; }
static bool IsScalar(dataType dtype) noexcept { return dtype == SCALAR_TYPE; }
static bool IsNumeric(dataType dtype) noexcept { return IsLabel(dtype) || IsScalar(dtype); }
// Is a VectorSpace type?
static bool IsVectorSpace(dataType dtype) noexcept
{
return GetNumberOfComponents(dtype) > 1 || dtype == SPH_TENSOR_TYPE;
}
// Parse things like "scalarField" or "ScalarField" -> SCALAR_TYPE etc.
// Ignore case on first letter (at pos), which makes it convenient for "volScalarField" too.
static dataType FieldToEnum(const std::string& fieldTypeName, size_t pos = 0);
// Handle "List<scalar>" -> SCALAR_TYPE etc.
static dataType ListToEnum(const std::string& listTypeName);
private:
// Implementation for FieldToEnum, ListToEnum
static dataType ToEnumImpl(const std::string& str, size_t pos, size_t len, bool ignoreCase);
};
//------------------------------------------------------------------------------
// class vtkOpenFOAMReaderPrivate
// the reader core of vtkOpenFOAMReader
class vtkOpenFOAMReaderPrivate : public vtkObject
{
public:
// Use sparingly
friend class vtkOpenFOAMReader;
static vtkOpenFOAMReaderPrivate* New();
vtkTypeMacro(vtkOpenFOAMReaderPrivate, vtkObject);
vtkGetMacro(TimeStep, int);
vtkSetMacro(TimeStep, int);
double GetTimeValue() const;
void SetTimeValue(double requestedTime);
vtkStringArray* GetTimeNames() { return this->TimeNames; }
vtkDoubleArray* GetTimeValues() { return this->TimeValues; }
// Print some time information (names, current time-step)
void PrintTimes(std::ostream& os, vtkIndent indent, bool full = false) const;
bool HasPolyMesh() const noexcept { return !this->PolyMeshTimeIndexFaces.empty(); }
const std::string& GetRegionName() const noexcept { return this->RegionName; }
vtkStringArray* GetLagrangianPaths() { return this->LagrangianPaths; }
// Read mesh/fields and create dataset
int RequestData(vtkMultiBlockDataSet* output);
int MakeMetaDataAtTimeStep(vtkStringArray*, vtkStringArray*, vtkStringArray*, bool);
// Gather time instances information and create cache for mesh times
bool MakeInformationVector(const std::string& casePath, const std::string& controlDictPath,
const std::string& procName, vtkOpenFOAMReader* parent, bool requirePolyMesh = true);
// Use given time instances information and create cache for mesh times
bool MakeInformationVector(const std::string& casePath, const std::string& procName,
vtkOpenFOAMReader* parent, vtkStringArray* timeNames, vtkDoubleArray* timeValues,
bool requirePolyMesh = true);
// Copy time instances information and create cache for mesh times
void SetupInformation(const std::string& casePath, const std::string& regionName,
const std::string& procName, vtkOpenFOAMReaderPrivate* master, bool requirePolyMesh = true);
private:
vtkOpenFOAMReader* Parent;
std::string CasePath; // The full path to the case - includes trailing '/'
std::string RegionName; // Region name. Empty for default region
std::string ProcessorName; // Processor subdirectory. Empty for serial case
// Time information
vtkDoubleArray* TimeValues; // Time values
vtkStringArray* TimeNames; // Directory names
// Topology indices into TimeValues, TimeName
std::vector<vtkIdType> PolyMeshTimeIndexPoints;
std::vector<vtkIdType> PolyMeshTimeIndexFaces;
// Indices into TimeValues, TimeName
int TimeStep;
int TimeStepOld;
// Topology time index, driven by PolyMeshTimeIndexFaces
int TopologyTimeIndex;
int InternalMeshSelectionStatus;
int InternalMeshSelectionStatusOld;
// filenames / directories
vtkStringArray* VolFieldFiles;
vtkStringArray* DimFieldFiles;
vtkStringArray* AreaFieldFiles;
vtkStringArray* PointFieldFiles;
vtkStringArray* LagrangianFieldFiles;
// The cloud paths (region-local)
vtkNew<vtkStringArray> LagrangianPaths;
// Mesh dimensions and construction information
vtkIdType NumPoints;
vtkIdType NumInternalFaces;
vtkIdType NumFaces;
vtkIdType NumCells;
// The face owner, neighbour (labelList)
vtkDataArray* FaceOwner;
vtkDataArray* FaceNeigh;
// For cell-to-point interpolation
vtkPolyData* AllBoundaries;
vtkDataArray* AllBoundariesPointMap;
vtkDataArray* InternalPoints;
// For caching mesh
vtkUnstructuredGrid* InternalMesh;
vtkMultiBlockDataSet* BoundaryMesh;
vtkFoamLabelArrayVector* BoundaryPointMap;
vtkFoamBoundaries BoundaryDict;
// Zones
vtkFoamZones cellZoneMap;
vtkFoamZones faceZoneMap;
vtkFoamZones pointZoneMap;
vtkMultiBlockDataSet* CellZoneMesh;
vtkMultiBlockDataSet* FaceZoneMesh;
vtkMultiBlockDataSet* PointZoneMesh;
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
// For polyhedral decomposition
vtkIdType NumTotalAdditionalCells;
vtkIdTypeArray* AdditionalCellIds;
vtkIntArray* NumAdditionalCells;
vtkFoamLabelArrayVector* AdditionalCellPoints;
#endif
#if VTK_FOAMFILE_FINITE_AREA
vtkFoamZones areaMeshMap;
vtkPolyData* AreaMesh;
#endif
// Constructor and destructor are kept private
vtkOpenFOAMReaderPrivate();
~vtkOpenFOAMReaderPrivate() override;
vtkOpenFOAMReaderPrivate(const vtkOpenFOAMReaderPrivate&) = delete;
void operator=(const vtkOpenFOAMReaderPrivate&) = delete;
// Clear mesh construction
void ClearInternalMeshes();
void ClearBoundaryMeshes();
void ClearZoneMeshes();
void ClearAreaMeshes();
void ClearMeshes();
// The subdirectory for a region. Eg, "/solid". Empty for default region.
std::string RegionPath() const
{
if (this->RegionName.empty())
{
return "";
}
return ("/" + this->RegionName);
}
// Prefix display qualifier for a region. Eg, "/solid/". Empty for default region.
std::string RegionPrefix() const
{
if (this->RegionName.empty())
{
return "";
}
return ("/" + this->RegionName + "/");
}
// Test if display (selection) name matches the current region.
// See RegionPrefix() comments
bool IsDisplayRegion(const std::string& displayName) const
{
if (this->RegionName.empty())
{
return (displayName[0] != '/');
}
else if (displayName[0] != '/')
{
return false;
}
// Match "/regionName/..."
const auto slash1 = displayName.find('/', 1);
return (slash1 != std::string::npos) &&
(displayName.compare(1, slash1 - 1, this->RegionName) == 0);
}
// The timeName for the given index, with special handling for "constant" time directory
std::string TimePath(int timeIndex) const
{
if (timeIndex < 0)
{
return this->CasePath + "constant";
}
return this->CasePath + this->TimeNames->GetValue(timeIndex);
}
std::string CurrentTimePath() const { return this->TimePath(this->TimeStep); }
// TimePath + region
std::string TimeRegionPath(int timeIndex) const
{
return this->TimePath(timeIndex) + this->RegionPath();
}
std::string CurrentTimeRegionPath() const { return this->TimeRegionPath(this->TimeStep); }
std::string CurrentTimeRegionPath(const std::vector<vtkIdType>& indexer) const
{
return this->TimeRegionPath(indexer[this->TimeStep]);
}
#if VTK_FOAMFILE_DEBUG
void PrintMeshTimes(const char* name, const std::vector<vtkIdType>&) const; // For debugging
#endif
// Search time directories for mesh
void PopulateMeshTimeIndices();
void AddFieldName(
const std::string& fieldName, const std::string& fieldType, bool isLagrangian = false);
// Search a time directory for field objects
void GetFieldNames(const std::string&, bool isLagrangian = false);
void SortFieldFiles(vtkStringArray* selections, vtkStringArray* files);
void LocateLagrangianClouds(const std::string& timePath);
#if VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT
// List time directories according to system/controlDict
vtkFoamError ListTimeDirectoriesByControlDict(const std::string& controlDictPath);
#endif
// List time directories by searching in a case directory
bool ListTimeDirectoriesByInstances();
// Read polyMesh/points (vectorField)
vtkSmartPointer<vtkFloatArray> ReadPointsFile(const std::string& timeRegionDir);
// Read polyMesh/faces (faceCompactList or faceList)
std::unique_ptr<vtkFoamLabelListList> ReadFacesFile(const std::string& timeRegionDir);
// Read polyMesh/{owner,neighbour}, check overall number of faces.
bool ReadOwnerNeighbourFiles(const std::string& timeRegionDir);
// Create meshCells from owner/neighbour information
std::unique_ptr<vtkFoamLabelListList> CreateCellFaces();
bool CheckFaceList(const vtkFoamLabelListList& faces);
// Create volume mesh
void InsertCellsToGrid(vtkUnstructuredGrid*, std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr,
const vtkFoamLabelListList& meshFaces, vtkIdList* cellLabels = nullptr
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
,
vtkIdTypeArray* additionalCellIds = nullptr, vtkFloatArray* pointArray = nullptr
#endif
);
vtkUnstructuredGrid* MakeInternalMesh(std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr,
const vtkFoamLabelListList& meshFaces, vtkFloatArray* pointArray);
void InsertFacesToGrid(vtkPolyData*, const vtkFoamLabelListList& meshFaces, vtkIdType startFace,
vtkIdType endFace, vtkIdList* faceLabels = nullptr, vtkDataArray* pointMap = nullptr,
bool isLookupValue = false);
vtkMultiBlockDataSet* MakeBoundaryMesh(
const vtkFoamLabelListList& meshFaces, vtkFloatArray* pointArray);
// Move additional points for decomposed cells
bool MoveInternalMesh(vtkUnstructuredGrid*, vtkFloatArray*);
bool MoveBoundaryMesh(vtkMultiBlockDataSet*, vtkFloatArray*);
// cell-to-point interpolator
void InterpolateCellToPoint(
vtkFloatArray*, vtkFloatArray*, vtkPointSet*, vtkDataArray*, vtkTypeInt64);
// Convert OpenFOAM dimension array to string
std::string ConstructDimensions(const vtkFoamDict& dict) const;
// read and create cell/point fields
bool ReadFieldFile(vtkFoamIOobject& io, vtkFoamDict& dict, const std::string& varName,
const vtkDataArraySelection* selection);
vtkSmartPointer<vtkFloatArray> FillField(vtkFoamEntry& entry, vtkIdType nElements,
const vtkFoamIOobject& io, vtkFoamTypes::dataType fieldDataType);
void GetVolFieldAtTimeStep(const std::string& varName, bool isInternalField = false);
void GetPointFieldAtTimeStep(const std::string& varName);
#if VTK_FOAMFILE_FINITE_AREA
void GetAreaFieldAtTimeStep(const std::string& varName);
#endif
// Create lagrangian mesh/fields
vtkMultiBlockDataSet* MakeLagrangianMesh();
// Read specified file (typeName) from polyMesh directory, using faces instance
std::unique_ptr<vtkFoamDict> GetPolyMeshFile(const std::string& typeName, bool mandatory);
// Create (cell|face|point) zones
bool GetCellZoneMesh(vtkMultiBlockDataSet* zoneMesh,
std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr, const vtkFoamLabelListList& meshFaces,
vtkPoints*);
bool GetFaceZoneMesh(
vtkMultiBlockDataSet* zoneMesh, const vtkFoamLabelListList& meshFaces, vtkPoints*);
bool GetPointZoneMesh(vtkMultiBlockDataSet* zoneMesh, vtkPoints*);
#if VTK_FOAMFILE_FINITE_AREA
// Mechanism for finiteArea mesh is similar to faceZone
bool GetAreaMesh(vtkPolyData* areaMesh, const vtkFoamLabelListList& meshFaces, vtkPoints*);
#endif
};
vtkStandardNewMacro(vtkOpenFOAMReaderPrivate);
//------------------------------------------------------------------------------
// Local Functions
namespace
{
// Set named block
void SetBlock(vtkMultiBlockDataSet* parent, unsigned int blockIndex, vtkDataObject* block,
const std::string& name)
{
parent->SetBlock(blockIndex, block);
parent->GetMetaData(blockIndex)->Set(vtkCompositeDataSet::NAME(), name.c_str());
}
// Append named block
void AppendBlock(vtkMultiBlockDataSet* parent, vtkDataObject* block, const std::string& name)
{
::SetBlock(parent, parent->GetNumberOfBlocks(), block, name);
}
// Set array name and fieldData attributes
// The optional suffix is for dimensions etc
void AddArrayToFieldData(vtkDataSetAttributes* fieldData, vtkDataArray* array,
const std::string& name, const std::string& suffix = "")
{
if (suffix.empty())
{
array->SetName(name.c_str());
}
else
{
array->SetName((name + suffix).c_str());
}
if (array->GetNumberOfComponents() == 1 && name == "p")
{
fieldData->SetScalars(array);
}
else if (array->GetNumberOfComponents() == 3 && name == "U")
{
fieldData->SetVectors(array);
}
else
{
fieldData->AddArray(array);
}
}
} // End anonymous namespace
//------------------------------------------------------------------------------
// Simple handling of common OpenFOAM data types
// Low-level implementation
vtkFoamTypes::dataType vtkFoamTypes::ToEnumImpl(
const std::string& str, size_t pos, size_t last, bool ignoreCase)
{
vtkFoamTypes::dataType dtype(vtkFoamTypes::NO_TYPE);
char firstChar = str[pos];
if (ignoreCase)
{
firstChar = std::tolower(firstChar);
}
++pos; // First character handled separately (for ignoring case)
size_t len = std::string::npos;
if (last != std::string::npos)
{
if (last > pos)
{
len = last - pos;
}
else
{
// Caught bad input
firstChar = '\0';
}
}
switch (firstChar)
{
case '\0':
{
break;
}
case 'b':
{
if (str.compare(pos, len, "ool") == 0)
{
// (Bool | bool)
dtype = vtkFoamTypes::BOOL_TYPE;
}
break;
}
case 'l':
{
if (str.compare(pos, len, "abel") == 0)
{
// (Label | label)
dtype = vtkFoamTypes::LABEL_TYPE;
}
break;
}
case 's':
{
if (str.compare(pos, len, "calar") == 0)
{
// (Scalar | scalar)
dtype = vtkFoamTypes::SCALAR_TYPE;
}
else if (str.compare(pos, len, "phericalTensor") == 0)
{
// (SphericalTensor | sphericalTensor)
dtype = vtkFoamTypes::SPH_TENSOR_TYPE;
}
else if (str.compare(pos, len, "ymmTensor") == 0)
{
// (SymmTensor | symmTensor)
dtype = vtkFoamTypes::SYMM_TENSOR_TYPE;
}
break;
}
case 't':
{
if (str.compare(pos, len, "ensor") == 0)
{
// (Tensor | tensor)
dtype = vtkFoamTypes::TENSOR_TYPE;
}
break;
}
case 'v':
{
if (str.compare(pos, len, "ector") == 0)
{
// (Vector | vector)
dtype = vtkFoamTypes::VECTOR_TYPE;
}
break;
}
}
return dtype;
}
// Fields: expects scalarField, volScalarField etc.
vtkFoamTypes::dataType vtkFoamTypes::FieldToEnum(const std::string& fieldTypeName, size_t pos)
{
// With ignoreCase
return vtkFoamTypes::ToEnumImpl(fieldTypeName, pos, fieldTypeName.find("Field", pos), true);
}
// Lists: expects "List<scalar>", "List<vector>" etc.
vtkFoamTypes::dataType vtkFoamTypes::ListToEnum(const std::string& listTypeName)
{
const auto endp = listTypeName.find('>');
if ((endp != std::string::npos) && (endp + 1 == listTypeName.length()) &&
listTypeName.compare(0, 5, "List<") == 0)
{
// Without ignoreCase
return vtkFoamTypes::ToEnumImpl(listTypeName, 5, endp, false);
}
return vtkFoamTypes::NO_TYPE;
}
//------------------------------------------------------------------------------
// class vtkFoamStreamOption
// Some elements from Foam::IOstreamOption and from Foam::IOstream
// - format (ASCII | BINARY)
// - label, scalar sizes
//
// Note: all enums pack into 32-bits, so we can use them in vtkFoamToken, vtkFoamFile etc.
// without adversely affecting the size of the structures
struct vtkFoamStreamOption
{
public:
// The OpenFOAM input stream format is ASCII or BINARY
enum fileFormat : unsigned char
{
ASCII = 0, // ASCII unless otherwise specified
BINARY
};
// Bitwidth of an OpenFOAM label (integer type).
// Corresponds to WM_LABEL_SIZE (32|64)
enum labelType : unsigned char
{
INT32,
INT64
};
// Bitwidth of an OpenFOAM scalar (floating-point type)
// Corresponds to WM_PRECISION_OPTION (SP|DP|SPDP)
enum scalarType : unsigned char
{
FLOAT32,
FLOAT64
};
private:
fileFormat Format = fileFormat::ASCII;
labelType LabelType = labelType::INT32;
scalarType ScalarType = scalarType::FLOAT64;
public:
// Default construct. ASCII, Int32, double precision
vtkFoamStreamOption() = default;
// Construct with specified handling for labels/floats
vtkFoamStreamOption(const bool use64BitLabels, const bool use64BitFloats)
{
this->SetLabel64(use64BitLabels);
this->SetFloat64(use64BitFloats);
}
bool IsAsciiFormat() const noexcept { return this->Format == fileFormat::ASCII; }
bool IsLabel64() const noexcept { return this->LabelType == labelType::INT64; }
bool IsFloat64() const noexcept { return this->ScalarType == scalarType::FLOAT64; }
void SetBinaryFormat(const bool on)
{
this->Format = (on ? fileFormat::BINARY : fileFormat::ASCII);
}
void SetLabel64(const bool on) noexcept
{
this->LabelType = (on ? labelType::INT64 : labelType::INT32);
}
void SetFloat64(const bool on) noexcept
{
this->ScalarType = (on ? scalarType::FLOAT64 : scalarType::FLOAT32);
}
const vtkFoamStreamOption& GetStreamOption() const noexcept
{
return static_cast<const vtkFoamStreamOption&>(*this);
}
void SetStreamOption(const vtkFoamStreamOption& opt) noexcept
{
static_cast<vtkFoamStreamOption&>(*this) = opt;
}
};
//------------------------------------------------------------------------------
// class vtkFoamToken
// token class which also works as container for list types
// - a word token is treated as a string token for simplicity
// - handles only atomic types. Handling of list types are left to the
// derived classes.
struct vtkFoamToken : public vtkFoamStreamOption
{
public:
enum tokenType
{
// Undefined type
UNDEFINED = 0,
// atomic types
PUNCTUATION,
LABEL,
SCALAR,
STRING,
IDENTIFIER,
// List types (vtkObject-derived)
BOOLLIST,
LABELLIST,
SCALARLIST,
VECTORLIST,
STRINGLIST,
// List types (non-vtkObject)
LABELLISTLIST,
ENTRYVALUELIST,
EMPTYLIST,
DICTIONARY,
// error state
TOKEN_ERROR
};
protected:
tokenType Type = tokenType::UNDEFINED;
union {
char Char;
vtkTypeInt64 Int;
double Double;
// Any/all pointer types
void* AnyPointer;
std::string* StringPtr;
// List types (vtkObject-derived)
vtkObjectBase* VtkObjectPtr;
vtkTypeInt8Array* BoolListPtr;
vtkDataArray* LabelListPtr;
vtkFloatArray* ScalarListPtr;
vtkFloatArray* VectorListPtr;
vtkStringArray* StringListPtr;
// List types (non-vtkObject)
vtkFoamLabelListList* LabelListListPtr;
vtkFoamPtrList<vtkFoamEntryValue>* EntryValuePtrs;
vtkFoamDict* DictPtr;
};
void Clear()
{
if (this->Type == STRING || this->Type == IDENTIFIER) // IsStringType
{
delete this->StringPtr;
}
}
void AssignData(const vtkFoamToken& tok)
{
switch (tok.Type)
{
case PUNCTUATION:
this->Char = tok.Char;
break;
case LABEL:
this->Int = tok.Int;
break;
case SCALAR:
this->Double = tok.Double;
break;
case STRING:
case IDENTIFIER:
this->StringPtr = new std::string(*tok.StringPtr);
break;
default:
break;
}
}
public:
// Default construct
vtkFoamToken() = default;
vtkFoamToken(const vtkFoamToken& tok)
: vtkFoamStreamOption(tok)
, Type(tok.Type)
{
this->AssignData(tok);
}
~vtkFoamToken() { this->Clear(); }
tokenType GetType() const { return this->Type; }
template <typename T>
bool Is() const;
template <typename T>
T To() const;
#if defined(_MSC_VER)
// workaround for Win32-64ids-nmake70
template <>
bool Is<vtkTypeInt32>() const;
template <>
bool Is<vtkTypeInt64>() const;
template <>
bool Is<float>() const;
template <>
bool Is<double>() const;
template <>
vtkTypeInt32 To<vtkTypeInt32>() const;
template <>
vtkTypeInt64 To<vtkTypeInt64>() const;
template <>
float To<float>() const;
template <>
double To<double>() const;
#endif
// Token represents PUNCTUATION
bool IsPunctuation() const noexcept { return this->Type == PUNCTUATION; }
// Token is PUNCTUATION and equal to parameter
bool IsPunctuation(const char c) const noexcept
{
return this->Type == PUNCTUATION && c == this->Char;
}
// Token represents an LABEL (integer) value
bool IsLabel() const noexcept { return this->Type == LABEL; }
// Token is LABEL (integer) value and equal to parameter
bool IsLabel(const vtkTypeInt64 val) const noexcept
{
return this->Type == LABEL && val == this->Int;
}
// Token represents a SCALAR (floating-point) value
bool IsScalar() const noexcept { return this->Type == SCALAR; }
// Token represents a numerical value
bool IsNumeric() const noexcept { return this->Type == LABEL || this->Type == SCALAR; }
// Token is STRING
bool IsString() const noexcept { return this->Type == STRING; }
// Token is STRING and equal to parameter
bool IsString(const std::string& str) const
{
return this->Type == STRING && str == *this->StringPtr;
}
// Token represents string content
bool IsStringType() const noexcept { return this->Type == STRING || this->Type == IDENTIFIER; }
// Integer value from LABEL token without checks
vtkTypeInt64 ToInt() const noexcept { return this->Int; }
// Mostly the same as To<float>, with additional check
float ToFloat() const noexcept
{
return this->Type == LABEL ? static_cast<float>(this->Int)
: this->Type == SCALAR ? static_cast<float>(this->Double) : 0.0F;
}
// Mostly the same as To<double>, with additional check
double ToDouble() const noexcept
{
return this->Type == LABEL ? static_cast<double>(this->Int)
: this->Type == SCALAR ? this->Double : 0.0;
}
std::string ToString() const { return *this->StringPtr; }
std::string ToIdentifier() const { return *this->StringPtr; }
// Clear token and set to be ERROR.
void SetBad()
{
this->Clear();
this->Type = TOKEN_ERROR;
}
void SetIdentifier(const std::string& idString)
{
this->operator=(idString);
this->Type = IDENTIFIER;
}
void operator=(const char c)
{
this->Clear();
this->Type = PUNCTUATION;
this->Char = c;
}
void operator=(const vtkTypeInt32 val)
{
this->Clear();
this->Type = LABEL;
this->Int = static_cast<vtkTypeInt32>(val);
if (this->IsLabel64())
{
vtkGenericWarningMacro("Assigned int32 to int64 label");
}
}
void operator=(const vtkTypeInt64 val)
{
this->Clear();
this->Type = LABEL;
this->Int = val;
if (!this->IsLabel64())
{
vtkGenericWarningMacro("Assigned int64 to int32 label - may lose precision");
}
}
void operator=(const double val)
{
this->Clear();
this->Type = SCALAR;
this->Double = val;
}
void operator=(const char* str)
{
this->Clear();
this->Type = STRING;
this->StringPtr = new std::string(str);
}
void operator=(const std::string& str)
{
this->Clear();
this->Type = STRING;
this->StringPtr = new std::string(str);
}
vtkFoamToken& operator=(const vtkFoamToken& tok)
{
this->Clear();
this->SetStreamOption(tok);
this->Type = tok.Type;
this->AssignData(tok);
return *this;
}
bool operator==(const char c) const noexcept { return this->IsPunctuation(c); }
bool operator!=(const char c) const noexcept { return !this->IsPunctuation(c); }
bool operator==(const vtkTypeInt32 val) const { return this->IsLabel(val); }
bool operator==(const vtkTypeInt64 val) const { return this->IsLabel(val); }
bool operator==(const std::string& str) const { return this->IsString(str); }
bool operator!=(const std::string& str) const { return !this->IsString(str); }
friend std::ostringstream& operator<<(std::ostringstream& os, const vtkFoamToken& tok)
{
switch (tok.GetType())
{
case TOKEN_ERROR:
os << "badToken (an unexpected EOF?)";
break;
case PUNCTUATION:
os << tok.Char;
break;
case LABEL:
if (tok.IsLabel64())
{
os << tok.Int;
}
else
{
os << static_cast<vtkTypeInt32>(tok.Int);
}
break;
case SCALAR:
os << tok.Double;
break;
case STRING:
case IDENTIFIER:
os << *(tok.StringPtr);
break;
default:
break;
}
return os;
}
};
//------------------------------------------------------------------------------
// Specializations for vtkFoamToken
template <>
inline bool vtkFoamToken::Is<vtkTypeInt8>() const
{
// masquerade for bool
return this->Type == LABEL;
}
template <>
inline bool vtkFoamToken::Is<vtkTypeInt32>() const
{
return this->Type == LABEL && !(this->IsLabel64());
}
template <>
inline bool vtkFoamToken::Is<vtkTypeInt64>() const
{
return this->Type == LABEL;
}
template <>
inline bool vtkFoamToken::Is<float>() const
{
return this->Type == LABEL || this->Type == SCALAR;
}
template <>
inline bool vtkFoamToken::Is<double>() const
{
return this->Type == SCALAR;
}
// ie, a bool value
template <>
inline vtkTypeInt8 vtkFoamToken::To<vtkTypeInt8>() const
{
return static_cast<vtkTypeInt8>(this->Int);
}
template <>
inline vtkTypeInt32 vtkFoamToken::To<vtkTypeInt32>() const
{
if (this->IsLabel64())
{
vtkGenericWarningMacro("Casting int64 label to int32 - may lose precision");
}
return static_cast<vtkTypeInt32>(this->Int);
}
template <>
inline vtkTypeInt64 vtkFoamToken::To<vtkTypeInt64>() const
{
return this->Int;
}
template <>
inline float vtkFoamToken::To<float>() const
{
return this->Type == LABEL ? static_cast<float>(this->Int) : static_cast<float>(this->Double);
}
template <>
inline double vtkFoamToken::To<double>() const
{
return this->Type == LABEL ? static_cast<double>(this->Int) : this->Double;
}
//------------------------------------------------------------------------------
// class vtkFoamFileStack
// list of variables that have to be saved when a file is included.
struct vtkFoamFileStack
{
protected:
vtkOpenFOAMReader* Reader; // GUI preference
std::string FileName;
FILE* File;
z_stream Z;
int ZStatus;
int LineNumber;
bool IsCompressed;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
bool WasNewline;
#endif
// buffer pointers. using raw pointers for performance reason.
unsigned char* Inbuf;
unsigned char* Outbuf;
unsigned char* BufPtr;
unsigned char* BufEndPtr;
vtkFoamFileStack(vtkOpenFOAMReader* reader)
: Reader(reader)
, File(nullptr)
, ZStatus(Z_OK)
, LineNumber(0)
, IsCompressed(false)
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
, WasNewline(true)
#endif
, Inbuf(nullptr)
, Outbuf(nullptr)
, BufPtr(nullptr)
, BufEndPtr(nullptr)
{
this->Z.zalloc = Z_NULL;
this->Z.zfree = Z_NULL;
this->Z.opaque = Z_NULL;
}
void Reset()
{
// this->FileName = "";
this->File = nullptr;
// this->ZStatus = Z_OK;
this->Z.zalloc = Z_NULL;
this->Z.zfree = Z_NULL;
this->Z.opaque = Z_NULL;
// this->LineNumber = 0;
this->IsCompressed = false;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->WasNewline = true;
#endif
this->Inbuf = nullptr;
this->Outbuf = nullptr;
// this->BufPtr = nullptr;
// this->BufEndPtr = nullptr;
}
public:
const std::string& GetFileName() const noexcept { return this->FileName; }
int GetLineNumber() const noexcept { return this->LineNumber; }
// Try to open the file. Return non-empty error string on failure
vtkFoamError TryOpen(const std::string& fileName)
{
vtkFoamError errors;
do
{
// Line number 0 to indicate beginning of file when an exception is thrown
this->LineNumber = 0;
this->FileName = fileName;
if (this->File)
{
errors << "File already opened within this object";
break;
}
this->File = vtksys::SystemTools::Fopen(this->FileName, "rb");
if (this->File == nullptr)
{
errors << "Cannot open file for reading";
break;
}
unsigned char zMagic[2];
if (fread(zMagic, 1, 2, this->File) == 2 && zMagic[0] == 0x1f && zMagic[1] == 0x8b)
{
// gzip-compressed format
this->Z.avail_in = 0;
this->Z.next_in = Z_NULL;
// + 32 to automatically recognize gzip format
if (inflateInit2(&this->Z, 15 + 32) == Z_OK)
{
this->IsCompressed = true;
this->Inbuf = new unsigned char[VTK_FOAMFILE_INBUFSIZE];
}
else
{
fclose(this->File);
this->File = nullptr;
errors << "Cannot init zstream";
if (this->Z.msg)
{
errors << " " << this->Z.msg;
}
break;
}
}
else
{
this->IsCompressed = false;
}
rewind(this->File);
this->ZStatus = Z_OK;
this->Outbuf = new unsigned char[VTK_FOAMFILE_OUTBUFSIZE + 1];
this->BufPtr = this->Outbuf + 1;
this->BufEndPtr = this->BufPtr;
this->LineNumber = 1;
} while (false);
return errors;
}
void CloseCurrentFile()
{
if (this->IsCompressed)
{
inflateEnd(&this->Z);
}
delete[] this->Inbuf;
delete[] this->Outbuf;
this->Inbuf = this->Outbuf = nullptr;
if (this->File)
{
fclose(this->File);
this->File = nullptr;
}
// don't reset the line number so that the last line number is
// retained after close
// lineNumber_ = 0;
}
};
//------------------------------------------------------------------------------
// class vtkFoamFile
// Read and tokenize the input. Retains format and label/scalar size information
struct vtkFoamFile
: public vtkFoamStreamOption
, public vtkFoamFileStack
{
private:
typedef vtkFoamFileStack Superclass;
// Find last slash (os-specific)
static size_t rfind_slash(const std::string& str, size_t pos = std::string::npos) noexcept
{
#if defined(_WIN32)
return str.find_last_of("/\\", pos);
#else
return str.find_last_of('/', pos);
#endif
}
// String equivalent cwd (os-specific)
static std::string cwd_string() noexcept
{
#if defined(_WIN32)
return std::string(".\\");
#else
return std::string("./");
#endif
}
public:
// The dictionary #inputMode values
enum inputMode
{
INPUT_MODE_MERGE,
INPUT_MODE_OVERWRITE,
INPUT_MODE_PROTECT,
INPUT_MODE_WARN,
INPUT_MODE_ERROR
};
// Generic exception throwing with stack trace
void ThrowStackTrace(const std::string& msg);
private:
std::string CasePath; // The full path to the case - includes trailing '/'
// The current input mode
inputMode InputMode;
// Handling include files
vtkFoamFileStack* Stack[VTK_FOAMFILE_INCLUDE_STACK_SIZE];
int StackI;
bool InflateNext(unsigned char* buf, size_t requestSize, vtkTypeInt64* readSize = nullptr);
int NextTokenHead();
// Keep exception throwing / recursive codes out-of-line to make
// putBack(), getc() and readExpecting() inline expandable
void ThrowDuplicatedPutBackException();
void ThrowUnexpectedEOFException();
void ThrowUnexpectedNondigitException(int c);
void ThrowUnexpectedTokenException(char, int c);
int ReadNext();
void PutBack(const int c)
{
if (--this->Superclass::BufPtr < this->Superclass::Outbuf)
{
this->ThrowDuplicatedPutBackException();
}
*this->Superclass::BufPtr = static_cast<unsigned char>(c);
}
// get a character
int Getc()
{
return this->Superclass::BufPtr == this->Superclass::BufEndPtr ? this->ReadNext()
: *this->Superclass::BufPtr++;
}
vtkFoamError StackString()
{
vtkFoamError err;
if (this->StackI > 0)
{
err << "\n included";
for (int stackI = this->StackI - 1; stackI >= 0; stackI--)
{
err << " from line " << this->Stack[stackI]->GetLineNumber() << " of "
<< this->Stack[stackI]->GetFileName() << "\n";
}
err << ": ";
}
return err;
}
bool CloseIncludedFile()
{
if (this->StackI == 0)
{
return false;
}
this->StackI--;
this->Superclass::CloseCurrentFile();
// use the default bitwise assignment operator
this->Superclass::operator=(*this->Stack[this->StackI]);
delete this->Stack[this->StackI];
return true;
}
public:
// No default construct, copy or assignment
vtkFoamFile() = delete;
vtkFoamFile(const vtkFoamFile&) = delete;
void operator=(const vtkFoamFile&) = delete;
vtkFoamFile(const std::string& casePath, vtkOpenFOAMReader* reader)
: vtkFoamStreamOption(reader->GetUse64BitLabels(), reader->GetUse64BitFloats())
, vtkFoamFileStack(reader)
, CasePath(casePath)
, InputMode(INPUT_MODE_MERGE)
, StackI(0)
{
}
~vtkFoamFile() { this->Close(); }
std::string GetCasePath() const noexcept { return this->CasePath; }
std::string GetFilePath() const { return vtkFoamFile::ExtractPath(this->FileName); }
inputMode GetInputMode() const noexcept { return this->InputMode; }
void Open(const std::string& fileName)
{
vtkFoamError err = this->Superclass::TryOpen(fileName);
if (!err.empty())
{
this->ThrowStackTrace(err);
}
}
void Close()
{
while (this->CloseIncludedFile())
;
this->CloseCurrentFile();
// Reinstate values from reader (eg, GUI)
auto& streamOpt = static_cast<vtkFoamStreamOption&>(*this);
streamOpt.SetLabel64(this->Reader->GetUse64BitLabels());
streamOpt.SetFloat64(this->Reader->GetUse64BitFloats());
}
// Static File Functions
// Check for existence of specified file
static bool IsFile(const std::string& file, bool checkGzip = true)
{
return (vtksys::SystemTools::FileExists(file, true) ||
(checkGzip && vtksys::SystemTools::FileExists(file + ".gz", true)));
}
//! Return file name (part beyond last /)
static std::string ExtractName(const std::string& path)
{
auto pos = vtkFoamFile::rfind_slash(path);
if (pos == std::string::npos)
{
// no slash
return path;
}
else if (pos + 1 == path.length())
{
// trailing slash
const auto endPos = pos;
pos = vtkFoamFile::rfind_slash(path, pos - 1);
if (pos == std::string::npos)
{
// no further slash
return path.substr(0, endPos);
}
else
{
return path.substr(pos + 1, endPos - pos - 1);
}
}
else
{
return path.substr(pos + 1);
}
}
//! Return directory path name (part before last /). Return includes trailing slash!
static std::string ExtractPath(const std::string& path)
{
const auto pos = vtkFoamFile::rfind_slash(path);
return pos == std::string::npos ? vtkFoamFile::cwd_string() : path.substr(0, pos + 1);
}
// Member Functions
std::string ExpandPath(const std::string& pathIn, const std::string& defaultPath)
{
std::string expandedPath;
bool isExpanded = false, wasPathSeparator = true;
size_t charI = 0;
const size_t nChars = pathIn.length();
std::string::size_type delim = 0;
if ('<' == pathIn[0] && (delim = pathIn.find(">/")) != std::string::npos)
{
// Expand a leading <tag>/
// Convenient for frequently used directories - see OpenFOAM stringOps.C
//
// Handle
// <case>/ => FOAM_CASE directory
// <constant>/ => FOAM_CASE/constant directory
// <system>/ => FOAM_CASE/system directory
// <etc>/ => not handled
const std::string tag(pathIn, 1, delim - 2);
if (tag == "case")
{
expandedPath = this->CasePath + '/';
isExpanded = true;
wasPathSeparator = false;
}
else if (tag == "constant" || tag == "system")
{
expandedPath = this->CasePath + '/' + tag + '/';
isExpanded = true;
wasPathSeparator = false;
}
// <etc> in not handled
if (isExpanded)
{
charI = delim + 2;
}
}
while (charI < nChars)
{
const char c = pathIn[charI];
switch (c)
{
case '$': // $-variable expansion
{
std::string variable;
while (++charI < nChars && (isalnum(pathIn[charI]) || pathIn[charI] == '_'))
{
variable += pathIn[charI];
}
if (variable == "FOAM_CASE") // discard path until the variable
{
expandedPath = this->CasePath;
wasPathSeparator = true;
isExpanded = true;
}
else if (variable == "FOAM_CASENAME")
{
// FOAM_CASENAME is the final directory name from CasePath
expandedPath += vtkFoamFile::ExtractName(this->CasePath);
wasPathSeparator = false;
isExpanded = true;
}
else
{
std::string value;
if (vtksys::SystemTools::GetEnv(variable, value))
{
expandedPath += value;
}
const auto len = expandedPath.length();
if (len > 0)
{
const char c2 = expandedPath[len - 1];
wasPathSeparator = (c2 == '/' || c2 == '\\');
}
else
{
wasPathSeparator = false;
}
}
}
break;
case '~': // home directory expansion
// not using vtksys::SystemTools::ConvertToUnixSlashes() for
// a bit better handling of "~"
if (wasPathSeparator)
{
std::string userName;
while (++charI < nChars && (pathIn[charI] != '/' && pathIn[charI] != '\\') &&
pathIn[charI] != '$')
{
userName += pathIn[charI];
}
std::string homeDir;
if (userName.empty())
{
if (!vtksys::SystemTools::GetEnv("HOME", homeDir) || homeDir.empty())
{
#if defined(_WIN32) && !defined(__CYGWIN__) || defined(__LIBCATAMOUNT__)
// No fallback
homeDir.clear();
#else
const struct passwd* pwentry = getpwuid(getuid());
if (pwentry == nullptr)
{
this->ThrowStackTrace("Home directory path not found");
}
homeDir = pwentry->pw_dir;
#endif
}
expandedPath = homeDir;
}
else if (userName == "OpenFOAM")
{
// So far only "~/.OpenFOAM" expansion is supported
if (!vtksys::SystemTools::GetEnv("HOME", homeDir) || homeDir.empty())
{
#if defined(_WIN32) && !defined(__CYGWIN__) || defined(__LIBCATAMOUNT__)
// No fallback
homeDir.clear();
#else
const struct passwd* pwentry = getpwuid(getuid());
if (pwentry == nullptr)
{
this->ThrowStackTrace("Home directory path not found");
}
homeDir = pwentry->pw_dir;
#endif
}
if (homeDir.empty())
{
expandedPath = homeDir;
}
else
{
expandedPath = homeDir + "/.OpenFOAM";
}
}
else
{
#if defined(_WIN32) && !defined(__CYGWIN__) || defined(__LIBCATAMOUNT__)
if (!vtksys::SystemTools::GetEnv("HOME", homeDir))
{
// No fallback
homeDir.clear();
}
expandedPath = vtkFoamFile::ExtractPath(homeDir) + userName;
#else
const struct passwd* pwentry = getpwnam(userName.c_str());
if (pwentry == nullptr)
{
this->ThrowStackTrace("No home directory for user " + userName);
}
expandedPath = pwentry->pw_dir;
#endif
}
wasPathSeparator = false;
isExpanded = true;
break;
}
VTK_FALLTHROUGH;
default:
wasPathSeparator = (c == '/' || c == '\\');
expandedPath += c;
charI++;
}
}
if (isExpanded || expandedPath[0] == '/' || expandedPath[0] == '\\')
{
return expandedPath;
}
else
{
return defaultPath + expandedPath;
}
}
void IncludeFile(const std::string& includedFileName, const std::string& defaultPath)
{
if (this->StackI >= VTK_FOAMFILE_INCLUDE_STACK_SIZE)
{
throw this->StackString() << "Exceeded maximum #include recursions of "
<< VTK_FOAMFILE_INCLUDE_STACK_SIZE;
}
// use the default bitwise copy constructor
this->Stack[this->StackI++] = new vtkFoamFileStack(*this);
this->Superclass::Reset();
this->Open(this->ExpandPath(includedFileName, defaultPath));
}
// the tokenizer
// returns true if success, false if encountered EOF
bool Read(vtkFoamToken& token)
{
token.SetStreamOption(this->GetStreamOption());
const bool use64BitLabels = this->IsLabel64();
// expanded the outermost loop in nextTokenHead() for performance
int c;
while (isspace(c = this->Getc())) // isspace() accepts -1 as EOF
{
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (c == '/')
{
this->PutBack(c);
c = this->NextTokenHead();
}
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
if (c != '#')
{
this->Superclass::WasNewline = false;
}
#endif
constexpr int MAXLEN = 1024;
char buf[MAXLEN + 1];
int charI = 0;
switch (c)
{
case '(':
case ')':
// high-priority punctuation token
token = static_cast<char>(c);
return true;
case '1':
case '2':
case '3':
case '4':
case '5':
case '6':
case '7':
case '8':
case '9':
case '0':
case '-':
// undetermined number token
do
{
buf[charI++] = static_cast<unsigned char>(c);
} while (isdigit(c = this->Getc()) && charI < MAXLEN);
if (c != '.' && c != 'e' && c != 'E' && charI < MAXLEN && c != EOF)
{
// label token
buf[charI] = '\0';
if (use64BitLabels)
{
token = static_cast<vtkTypeInt64>(strtoll(buf, nullptr, 10));
}
else
{
token = static_cast<vtkTypeInt32>(strtol(buf, nullptr, 10));
}
this->PutBack(c);
return true;
}
VTK_FALLTHROUGH;
case '.':
// scalar token
if (c == '.' && charI < MAXLEN)
{
// read decimal fraction part
buf[charI++] = static_cast<unsigned char>(c);
while (isdigit(c = this->Getc()) && charI < MAXLEN)
{
buf[charI++] = static_cast<unsigned char>(c);
}
}
if ((c == 'e' || c == 'E') && charI < MAXLEN)
{
// read exponent part
buf[charI++] = static_cast<unsigned char>(c);
if (((c = this->Getc()) == '+' || c == '-') && charI < MAXLEN)
{
buf[charI++] = static_cast<unsigned char>(c);
c = this->Getc();
}
while (isdigit(c) && charI < MAXLEN)
{
buf[charI++] = static_cast<unsigned char>(c);
c = this->Getc();
}
}
if (charI == 1 && buf[0] == '-')
{
token = '-';
this->PutBack(c);
return true;
}
buf[charI] = '\0';
token = strtod(buf, nullptr);
this->PutBack(c);
break;
case ';':
case '{':
case '}':
case '[':
case ']':
case ':':
case ',':
case '=':
case '+':
case '*':
case '/':
// low-priority punctuation token
token = static_cast<char>(c);
return true;
case '"':
{
// string token
bool wasEscape = false;
while ((c = this->Getc()) != EOF && charI < MAXLEN)
{
if (c == '\\' && !wasEscape)
{
wasEscape = true;
continue;
}
else if (c == '"' && !wasEscape)
{
break;
}
else if (c == '\n')
{
++this->Superclass::LineNumber;
if (!wasEscape)
{
this->ThrowStackTrace("Unescaped newline in string constant");
}
}
buf[charI++] = static_cast<unsigned char>(c);
wasEscape = false;
}
buf[charI] = '\0';
token = buf;
}
break;
case EOF:
// end of file
token.SetBad();
return false;
case '$':
{
vtkFoamToken identifierToken;
if (!this->Read(identifierToken))
{
this->ThrowStackTrace("Unexpected EOF reading identifier");
}
if (identifierToken.GetType() != vtkFoamToken::STRING)
{
throw this->StackString() << "Expected a word, found " << identifierToken;
}
token.SetIdentifier(identifierToken.ToString());
return true;
}
case '#':
{
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
// the OpenFOAM #-directives can indeed be placed in the
// middle of a line
if (!this->Superclass::WasNewline)
{
this->ThrowStackTrace("Encountered #-directive in the middle of a line");
}
this->Superclass::WasNewline = false;
#endif
// read directive
vtkFoamToken directiveToken;
if (!this->Read(directiveToken))
{
this->ThrowStackTrace("Unexpected EOF reading directive");
}
if (directiveToken == "include")
{
vtkFoamToken fileNameToken;
if (!this->Read(fileNameToken))
{
this->ThrowStackTrace("Unexpected EOF reading filename");
}
this->IncludeFile(fileNameToken.ToString(), vtkFoamFile::ExtractPath(this->FileName));
}
else if (directiveToken == "sinclude" || directiveToken == "includeIfPresent")
{
vtkFoamToken fileNameToken;
if (!this->Read(fileNameToken))
{
this->ThrowStackTrace("Unexpected EOF reading filename");
}
// special treatment since the file is allowed to be missing
const std::string fullName =
this->ExpandPath(fileNameToken.ToString(), vtkFoamFile::ExtractPath(this->FileName));
FILE* fh = vtksys::SystemTools::Fopen(fullName, "rb");
if (fh)
{
fclose(fh);
this->IncludeFile(fileNameToken.ToString(), vtkFoamFile::ExtractPath(this->FileName));
}
}
else if (directiveToken == "inputMode")
{
vtkFoamToken modeToken;
if (!this->Read(modeToken))
{
this->ThrowStackTrace("Unexpected EOF reading inputMode specifier");
}
if (modeToken == "merge" || modeToken == "default")
{
this->InputMode = INPUT_MODE_MERGE;
}
else if (modeToken == "overwrite")
{
this->InputMode = INPUT_MODE_OVERWRITE;
}
else if (modeToken == "protect")
{
// not properly supported - treat like "merge" for now
// this->InputMode = INPUT_MODE_PROTECT;
this->InputMode = INPUT_MODE_MERGE;
}
else if (modeToken == "warn")
{
// not properly supported - treat like "error" for now
// this->InputMode = INPUT_MODE_WARN;
this->InputMode = INPUT_MODE_ERROR;
}
else if (modeToken == "error")
{
this->InputMode = INPUT_MODE_ERROR;
}
else
{
throw this->StackString() << "Expected one of inputMode specifiers "
"(merge, overwrite, protect, warn, error, default), found "
<< modeToken;
}
}
else if (directiveToken == '{')
{
// '#{' verbatim/code block. swallow everything until a closing '#}'
// This hopefully matches the first one...
while (true)
{
c = this->NextTokenHead();
if (c == EOF)
{
this->ThrowStackTrace("Unexpected EOF while skipping over #{ directive");
}
else if (c == '#')
{
c = this->Getc();
if (c == '/')
{
this->PutBack(c);
}
else if (c == '}')
{
break;
}
}
}
}
else
{
throw this->StackString() << "Unsupported directive " << directiveToken;
}
return this->Read(token);
}
default:
{
// parses as a word token, but gives the STRING type for simplicity
int inBrace = 0;
do
{
if (c == '(')
{
inBrace++;
}
else if (c == ')' && --inBrace == -1)
{
break;
}
buf[charI++] = static_cast<unsigned char>(c);
// valid characters that constitutes a word
// cf. src/OpenFOAM/primitives/strings/word/wordI.H
} while ((c = this->Getc()) != EOF && !isspace(c) && c != '"' && c != '/' && c != ';' &&
c != '{' && c != '}' && charI < MAXLEN);
buf[charI] = '\0';
token = buf;
this->PutBack(c);
}
}
if (c == EOF)
{
this->ThrowUnexpectedEOFException();
}
if (charI == MAXLEN)
{
throw this->StackString() << "Exceeded maximum allowed length of " << MAXLEN;
}
return true;
}
// fread or gzread with buffering handling
vtkTypeInt64 Read(unsigned char* buf, const vtkTypeInt64 len)
{
const size_t buflen = (this->Superclass::BufEndPtr - this->Superclass::BufPtr);
vtkTypeInt64 readlen;
if (static_cast<size_t>(len) > buflen)
{
memcpy(buf, this->Superclass::BufPtr, buflen);
this->InflateNext(buf + buflen, len - buflen, &readlen);
if (readlen >= 0)
{
readlen += buflen;
}
else
{
if (buflen == 0) // return EOF
{
readlen = -1;
}
else
{
readlen = buflen;
}
}
this->Superclass::BufPtr = this->Superclass::BufEndPtr;
}
else
{
memcpy(buf, this->Superclass::BufPtr, len);
this->Superclass::BufPtr += len;
readlen = len;
}
for (vtkTypeInt64 i = 0; i < readlen; ++i)
{
if (buf[i] == '\n')
{
++this->Superclass::LineNumber;
}
}
return readlen;
}
void ReadExpecting(const char expected)
{
// skip prepending invalid chars
// expanded the outermost loop in nextTokenHead() for performance
int c;
while (isspace(c = this->Getc())) // isspace() accepts -1 as EOF
{
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (c == '/')
{
this->PutBack(c);
c = this->NextTokenHead();
}
if (c != expected)
{
this->ThrowUnexpectedTokenException(expected, c);
}
}
void ReadExpecting(const char* str)
{
vtkFoamToken tok;
if (!this->Read(tok) || tok != str)
{
throw this->StackString() << "Expected string \"" << str << "\", found " << tok;
}
}
// ASCII read of longest integer
vtkTypeInt64 ReadIntegerValue();
// ASCII read of longest floating-point
double ReadDoubleValue();
};
//------------------------------------------------------------------------------
// Code: vtkFoamFile
int vtkFoamFile::ReadNext()
{
if (!this->InflateNext(this->Superclass::Outbuf + 1, VTK_FOAMFILE_OUTBUFSIZE))
{
return this->CloseIncludedFile() ? this->Getc() : EOF;
}
return *this->Superclass::BufPtr++;
}
// specialized for reading an integer value.
// not using the standard strtol() for speed reason.
vtkTypeInt64 vtkFoamFile::ReadIntegerValue()
{
// skip prepending invalid chars
// expanded the outermost loop in nextTokenHead() for performance
int c;
while (isspace(c = this->Getc())) // isspace() accepts -1 as EOF
{
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (c == '/')
{
this->PutBack(c);
c = this->NextTokenHead();
}
// leading sign?
const bool negNum = (c == '-');
if (negNum || c == '+')
{
c = this->Getc();
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (!isdigit(c)) // isdigit() accepts -1 as EOF
{
if (c == EOF)
{
this->ThrowUnexpectedEOFException();
}
else
{
this->ThrowUnexpectedNondigitException(c);
}
}
vtkTypeInt64 num = c - '0';
while (isdigit(c = this->Getc()))
{
num = 10 * num + c - '0';
}
if (c == EOF)
{
this->ThrowUnexpectedEOFException();
}
this->PutBack(c);
return negNum ? -num : num;
}
// extremely simplified high-performing string to floating point
// conversion code based on
// ParaView3/VTK/Utilities/vtksqlite/vtk_sqlite3.c
double vtkFoamFile::ReadDoubleValue()
{
// skip prepending invalid chars
// expanded the outermost loop in nextTokenHead() for performance
int c;
while (isspace(c = this->Getc())) // isspace() accepts -1 as EOF
{
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (c == '/')
{
this->PutBack(c);
c = this->NextTokenHead();
}
// leading sign?
const bool negNum = (c == '-');
if (negNum || c == '+')
{
c = this->Getc();
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (!isdigit(c) && c != '.') // Attention: isdigit() accepts EOF
{
this->ThrowUnexpectedNondigitException(c);
}
double num = 0;
// read integer part (before '.')
if (c != '.')
{
num = c - '0';
while (isdigit(c = this->Getc()))
{
num = num * 10.0 + (c - '0');
}
}
// read decimal part (after '.')
if (c == '.')
{
double divisor = 1.0;
while (isdigit(c = this->Getc()))
{
num = num * 10.0 + (c - '0');
divisor *= 10.0;
}
num /= divisor;
}
// read exponent part
if (c == 'E' || c == 'e')
{
int esign = 1;
int eval = 0;
double scale = 1.0;
c = this->Getc();
if (c == '-')
{
esign = -1;
c = this->Getc();
}
else if (c == '+')
{
c = this->Getc();
}
while (isdigit(c))
{
eval = eval * 10 + (c - '0');
c = this->Getc();
}
// fast exponent multiplication!
while (eval >= 64)
{
scale *= 1.0e+64;
eval -= 64;
}
while (eval >= 16)
{
scale *= 1.0e+16;
eval -= 16;
}
while (eval >= 4)
{
scale *= 1.0e+4;
eval -= 4;
}
while (eval >= 1)
{
scale *= 1.0e+1;
eval -= 1;
}
if (esign < 0)
{
num /= scale;
}
else
{
num *= scale;
}
}
if (c == EOF)
{
this->ThrowUnexpectedEOFException();
}
this->PutBack(c);
return negNum ? -num : num;
}
void vtkFoamFile::ThrowStackTrace(const std::string& msg)
{
throw this->StackString() << msg;
}
// hacks to keep exception throwing code out-of-line to make
// putBack() and readExpecting() inline expandable
void vtkFoamFile::ThrowUnexpectedEOFException()
{
this->ThrowStackTrace("Unexpected EOF");
}
void vtkFoamFile::ThrowUnexpectedNondigitException(int c)
{
throw this->StackString() << "Expected a number, found a non-digit character "
<< static_cast<char>(c);
}
void vtkFoamFile::ThrowUnexpectedTokenException(char expected, int c)
{
vtkFoamError err;
err << this->StackString() << "Expected punctuation token '" << expected << "', found ";
if (c == EOF)
{
err << "EOF";
}
else
{
err << static_cast<char>(c);
}
throw err;
}
void vtkFoamFile::ThrowDuplicatedPutBackException()
{
this->ThrowStackTrace("Attempted duplicated putBack()");
}
bool vtkFoamFile::InflateNext(unsigned char* buf, size_t requestSize, vtkTypeInt64* readSize)
{
if (readSize)
{
*readSize = -1; // Set to an error state for early returns
}
size_t size;
if (this->Superclass::IsCompressed)
{
if (this->Superclass::ZStatus != Z_OK)
{
return false;
}
this->Superclass::Z.next_out = buf;
this->Superclass::Z.avail_out = static_cast<uInt>(requestSize);
do
{
if (this->Superclass::Z.avail_in == 0)
{
this->Superclass::Z.next_in = this->Superclass::Inbuf;
this->Superclass::Z.avail_in = static_cast<uInt>(
fread(this->Superclass::Inbuf, 1, VTK_FOAMFILE_INBUFSIZE, this->Superclass::File));
if (ferror(this->Superclass::File))
{
this->ThrowStackTrace("failed in fread()");
}
}
this->Superclass::ZStatus = inflate(&this->Superclass::Z, Z_NO_FLUSH);
if (this->Superclass::ZStatus == Z_STREAM_END
#if VTK_FOAMFILE_OMIT_CRCCHECK
// the dummy CRC function causes data error when finalizing
// so we have to proceed even when a data error is detected
|| this->Superclass::ZStatus == Z_DATA_ERROR
#endif
)
{
break;
}
if (this->Superclass::ZStatus != Z_OK)
{
throw this->StackString() << "Inflation failed: "
<< (this->Superclass::Z.msg ? this->Superclass::Z.msg : "");
}
} while (this->Superclass::Z.avail_out > 0);
size = requestSize - this->Superclass::Z.avail_out;
}
else
{
// not compressed
size = fread(buf, 1, requestSize, this->Superclass::File);
}
if (size <= 0)
{
// retain the current location bufPtr_ to the end of the buffer so that
// getc() returns EOF again when called next time
return false;
}
// size > 0
// reserve the first byte for getback char
this->Superclass::BufPtr = this->Superclass::Outbuf + 1;
this->Superclass::BufEndPtr = this->Superclass::BufPtr + size;
if (readSize)
{
// Cast size_t to int64. Should be OK since requestSize came from OpenFOAM (signed integer)
*readSize = static_cast<vtkTypeInt64>(size);
}
return true;
}
// get next semantically valid character
int vtkFoamFile::NextTokenHead()
{
while (true)
{
int c;
while (isspace(c = this->Getc())) // isspace() accepts -1 as EOF
{
if (c == '\n')
{
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
}
if (c == '/')
{
if ((c = this->Getc()) == '/')
{
while ((c = this->Getc()) != EOF && c != '\n')
;
if (c == EOF)
{
return c;
}
++this->Superclass::LineNumber;
#if VTK_FOAMFILE_RECOGNIZE_LINEHEAD
this->Superclass::WasNewline = true;
#endif
}
else if (c == '*')
{
while (true)
{
while ((c = this->Getc()) != EOF && c != '*')
{
if (c == '\n')
{
++this->Superclass::LineNumber;
}
}
if (c == EOF)
{
return c;
}
else if ((c = this->Getc()) == '/')
{
break;
}
this->PutBack(c);
}
}
else
{
this->PutBack(c); // may be an EOF
return '/';
}
}
else // may be an EOF
{
return c;
}
}
#if defined(__hpux)
return EOF; // this line should not be executed; workaround for HP-UXia64-aCC
#endif
}
//------------------------------------------------------------------------------
// class vtkFoamDict
// A class to holds a FoamFile data structure
struct vtkFoamDict : public std::vector<vtkFoamEntry*>
{
private:
typedef std::vector<vtkFoamEntry*> Superclass;
vtkFoamToken Token;
const vtkFoamDict* UpperDictPtr;
vtkFoamDict(const vtkFoamDict&) = delete;
public:
// Default construct with given parent directory
explicit vtkFoamDict(const vtkFoamDict* upperDictPtr = nullptr)
: UpperDictPtr(upperDictPtr)
{
}
// Copy construct with given parent directory
vtkFoamDict(const vtkFoamDict& dict, const vtkFoamDict* upperDictPtr);
// Destructor - delete list elements if held by the dictionary
~vtkFoamDict();
// Remove top element, deleting its pointer
void remove_back();
void SetStreamOption(const vtkFoamStreamOption& opt) { this->Token.SetStreamOption(opt); }
bool IsLabel64() const { return this->Token.IsLabel64(); } // convenience
const vtkFoamToken& GetToken() const { return this->Token; }
const vtkFoamDict* GetUpperDictPtr() const { return this->UpperDictPtr; }
vtkFoamToken::tokenType GetType() const
{
return (this->Token.GetType() == vtkFoamToken::UNDEFINED ? vtkFoamToken::DICTIONARY
: this->Token.GetType());
}
// Return list of keywords - table of contents
std::vector<std::string> Toc() const;
// Search dictionary for specified keyword. Return nullptr on failure.
vtkFoamEntry* Lookup(const std::string& keyword, bool isPattern = false) const;
// Reads a FoamFile or a subdictionary.
// If the stream to be read is a subdictionary,
// the preceding '{' is assumed to have already been discarded.
bool Read(
vtkFoamIOobject& io, bool isSubDict = false, const vtkFoamToken& firstKeyword = vtkFoamToken());
};
//------------------------------------------------------------------------------
// class vtkFoamIOobject
// Extends vtkFoamFile with OpenFOAM class/object information
struct vtkFoamIOobject : public vtkFoamFile
{
private:
typedef vtkFoamFile Superclass;
std::string objectName_;
std::string headerClassName_;
vtkFoamError error_;
// Inform IO object that lagrangian/positions has extra data (OpenFOAM v1.4 - v2.4)
const bool LagrangianPositionsExtraData_;
// Reads OpenFOAM format/class/object information and handles "arch" information
void ReadHeader();
// Attempt to open file (or file.gz) and read header
bool OpenFile(const std::string& file, bool checkGzip = false)
{
this->ClearError(); // Discard any previous errors
try
{
this->Superclass::Open(file);
checkGzip = false;
}
catch (const vtkFoamError& err)
{
if (checkGzip)
{
// Avoid checking again if already ends_with(".gz")
const auto len = file.length();
if (len > 3 && file.compare(len - 3, std::string::npos, ".gz") == 0)
{
checkGzip = false;
}
}
if (!checkGzip)
{
this->SetError(err);
return false;
}
}
if (checkGzip)
{
try
{
this->Superclass::Open(file + ".gz");
}
catch (const vtkFoamError& err)
{
this->SetError(err);
return false;
}
}
try
{
this->ReadHeader();
}
catch (const vtkFoamError& err)
{
this->Superclass::Close();
this->SetError(err);
return false;
}
return true;
}
void CloseFile()
{
this->Superclass::Close();
this->objectName_.clear();
this->headerClassName_.clear();
this->error_.clear();
}
public:
// No generated methods
vtkFoamIOobject() = delete;
vtkFoamIOobject(const vtkFoamIOobject&) = delete;
void operator=(const vtkFoamIOobject&) = delete;
// Construct for specified case -path
vtkFoamIOobject(const std::string& casePath, vtkOpenFOAMReader* reader)
: vtkFoamFile(casePath, reader)
, LagrangianPositionsExtraData_(static_cast<bool>(!reader->GetPositionsIsIn13Format()))
{
}
~vtkFoamIOobject() { this->Close(); }
// Attempt to open file (without gzip fallback) and read FoamFile header
bool Open(const std::string& file) { return this->OpenFile(file, false); }
// Attempt to open file (with gzip fallback) and read FoamFile header
bool OpenOrGzip(const std::string& file) { return this->OpenFile(file, true); }
// Attempt to open file relative to the case, and read FoamFile header
bool OpenCaseFile(const std::string& file) { return this->OpenFile(this->GetCasePath() + file); }
// Attempt to open file (or file.gz) relative to the case, and read FoamFile header
bool OpenCaseFileOrGzip(const std::string& file)
{
return this->OpenFile(this->GetCasePath() + file);
}
void Close() { this->CloseFile(); }
const std::string& GetClassName() const noexcept { return this->headerClassName_; }
const std::string& GetObjectName() const noexcept { return this->objectName_; }
const vtkFoamError& GetError() const noexcept { return this->error_; }
void ClearError() noexcept { this->error_.clear(); }
bool HasError() const noexcept { return !this->error_.empty(); }
void SetError(const vtkFoamError& err) { this->error_ = err; }
bool GetLagrangianPositionsExtraData() const { return this->LagrangianPositionsExtraData_; }
};
//------------------------------------------------------------------------------
// ASCII read of primitive, with type casting
template <typename T>
struct vtkFoamReadValue
{
static T ReadValue(vtkFoamIOobject& io);
};
template <>
inline vtkTypeInt8 vtkFoamReadValue<vtkTypeInt8>::ReadValue(vtkFoamIOobject& io)
{
return static_cast<vtkTypeInt8>(io.ReadIntegerValue());
}
template <>
inline vtkTypeInt32 vtkFoamReadValue<vtkTypeInt32>::ReadValue(vtkFoamIOobject& io)
{
return static_cast<vtkTypeInt32>(io.ReadIntegerValue());
}
template <>
inline vtkTypeInt64 vtkFoamReadValue<vtkTypeInt64>::ReadValue(vtkFoamIOobject& io)
{
return io.ReadIntegerValue();
}
template <>
inline float vtkFoamReadValue<float>::ReadValue(vtkFoamIOobject& io)
{
return static_cast<float>(io.ReadDoubleValue());
}
template <>
inline double vtkFoamReadValue<double>::ReadValue(vtkFoamIOobject& io)
{
return io.ReadDoubleValue();
}
//------------------------------------------------------------------------------
// struct vtkFoamRead for reading primitives, lists etc.
struct vtkFoamRead
{
// --------------------------------------------------------------------------
// Reading lists of primitives (int/float/...)
template <typename listT, typename primitiveT>
class listTraits
{
listT* Ptr;
public:
using ValueType = typename listT::ValueType;
listTraits()
: Ptr(listT::New())
{
}
// Get the contained pointer
listT* GetPointer() const noexcept { return this->Ptr; }
// De-reference pointer for operation
listT* operator->() const noexcept { return this->Ptr; }
void ReadValue(vtkFoamIOobject&, const vtkFoamToken& currToken)
{
if (!currToken.Is<primitiveT>())
{
throw vtkFoamError() << "Expected an integer or a (, found " << currToken;
}
this->Ptr->InsertNextValue(currToken.To<primitiveT>());
}
void ReadUniformValues(vtkFoamIOobject& io)
{
primitiveT value = vtkFoamReadValue<primitiveT>::ReadValue(io);
this->Ptr->FillValue(value);
}
void ReadAsciiList(vtkFoamIOobject& io)
{
const vtkIdType nTuples = this->Ptr->GetNumberOfTuples();
for (vtkIdType i = 0; i < nTuples; ++i)
{
this->Ptr->SetValue(i, vtkFoamReadValue<primitiveT>::ReadValue(io));
}
}
void ReadBinaryList(vtkFoamIOobject& io)
{
// nComponents == 1
const vtkIdType nTuples = this->Ptr->GetNumberOfTuples();
const size_t nbytes = (nTuples * sizeof(primitiveT));
if (typeid(ValueType) == typeid(primitiveT))
{
io.Read(reinterpret_cast<unsigned char*>(this->Ptr->GetPointer(0)), nbytes);
}
else
{
auto* fileData = vtkDataArray::CreateDataArray(vtkTypeTraits<primitiveT>::VTKTypeID());
// nComponents == 1
fileData->SetNumberOfTuples(nTuples);
io.Read(reinterpret_cast<unsigned char*>(fileData->GetVoidPointer(0)), nbytes);
this->Ptr->DeepCopy(fileData);
fileData->Delete();
}
}
};
// --------------------------------------------------------------------------
// Reads rank 1 lists of types vector, sphericalTensor, symmTensor and tensor.
// If isPositions is true it reads Cloud type of data as
// particle positions. cf. (the positions format)
// src/lagrangian/basic/particle/particleIO.C - writePosition()
template <typename listT, typename primitiveT, int nComponents, bool isPositions = false>
class vectorListTraits
{
listT* Ptr;
// Items to skip for lagrangian/positions (class Cloud) after the x/y/z values.
// xyz (3*scalar) + celli (label)
// in OpenFOAM 1.4 -> 2.4 also had facei (label) and stepFraction (scalar)
// ASCII only
static void LagrangianPositionsSkip(vtkFoamIOobject& io)
{
(void)io.ReadIntegerValue(); // Skip celli (label)
if (io.GetLagrangianPositionsExtraData())
{
(void)io.ReadIntegerValue(); // Skip facei (label)
(void)io.ReadDoubleValue(); // Skip stepFraction (scalar)
}
}
public:
using ValueType = typename listT::ValueType;
vectorListTraits()
: Ptr(listT::New())
{
this->Ptr->SetNumberOfComponents(nComponents);
}
// Get the contained pointer
listT* GetPointer() const noexcept { return this->Ptr; }
// De-reference pointer for operation
listT* operator->() const noexcept { return this->Ptr; }
void ReadValue(vtkFoamIOobject& io, const vtkFoamToken& currToken)
{
if (currToken != '(')
{
throw vtkFoamError() << "Expected '(', found " << currToken;
}
primitiveT tuple[nComponents];
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
tuple[cmpt] = vtkFoamReadValue<primitiveT>::ReadValue(io);
}
::remapFoamTuple<nComponents == 6>(tuple); // For symmTensor
io.ReadExpecting(')');
this->Ptr->InsertNextTuple(tuple);
}
void ReadUniformValues(vtkFoamIOobject& io)
{
const vtkIdType nTuples = this->Ptr->GetNumberOfTuples();
io.ReadExpecting('(');
primitiveT tuple[nComponents];
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
tuple[cmpt] = vtkFoamReadValue<primitiveT>::ReadValue(io);
}
::remapFoamTuple<nComponents == 6>(tuple); // For symmTensor
io.ReadExpecting(')');
if (isPositions)
{
this->LagrangianPositionsSkip(io);
}
for (vtkIdType i = 0; i < nTuples; ++i)
{
this->Ptr->SetTuple(i, tuple);
}
}
void ReadAsciiList(vtkFoamIOobject& io)
{
const vtkIdType nTuples = this->Ptr->GetNumberOfTuples();
for (vtkIdType i = 0; i < nTuples; ++i)
{
io.ReadExpecting('(');
ValueType* tuple = this->Ptr->GetPointer(nComponents * i);
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
tuple[cmpt] = static_cast<ValueType>(vtkFoamReadValue<primitiveT>::ReadValue(io));
}
::remapFoamTuple<nComponents == 6>(tuple); // For symmTensor
io.ReadExpecting(')');
if (isPositions)
{
this->LagrangianPositionsSkip(io);
}
}
}
void ReadBinaryList(vtkFoamIOobject& io)
{
const vtkTypeInt64 nTuples = this->Ptr->GetNumberOfTuples();
if (isPositions) // lagrangian/positions (class Cloud)
{
// xyz (3*scalar) + celli (label)
// in OpenFOAM 1.4 -> 2.4 also had facei (label) and stepFraction (scalar)
const unsigned labelWidth = (io.IsLabel64() ? 8 : 4);
const unsigned tupleLength = (sizeof(primitiveT) * nComponents + labelWidth +
(io.GetLagrangianPositionsExtraData() ? (labelWidth + sizeof(primitiveT)) : 0));
// Variable-sized stack arrays are non-standard, so use our own version
// Have a max of 6 double/int64 elements = 48 bytes. Allocate 64 bytes for good measure
vtkFoamStackVector<unsigned char, 64> buffer(tupleLength);
primitiveT* tuple = reinterpret_cast<primitiveT*>(buffer.data());
for (vtkTypeInt64 i = 0; i < nTuples; ++i)
{
io.ReadExpecting('(');
io.Read(reinterpret_cast<unsigned char*>(tuple), tupleLength);
io.ReadExpecting(')');
this->Ptr->SetTuple(i, tuple);
}
}
else
{
// Compiler hint for better unrolling:
VTK_ASSUME(this->Ptr->GetNumberOfComponents() == nComponents);
const unsigned tupleLength = (sizeof(primitiveT) * nComponents);
primitiveT tuple[nComponents];
for (vtkTypeInt64 i = 0; i < nTuples; ++i)
{
const int readLength = io.Read(reinterpret_cast<unsigned char*>(tuple), tupleLength);
if (readLength != tupleLength)
{
throw vtkFoamError() << "Failed to read tuple " << i << '/' << nTuples << ": Expected "
<< tupleLength << " bytes, got " << readLength << " bytes.";
}
::remapFoamTuple<nComponents == 6>(tuple); // For symmTensor
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
this->Ptr->SetTypedComponent(i, cmpt, static_cast<ValueType>(tuple[cmpt]));
}
}
}
}
};
};
//------------------------------------------------------------------------------
// class vtkFoamEntryValue
// a class that represents a value of a dictionary entry that corresponds to
// its keyword. note that an entry can have more than one value.
struct vtkFoamEntryValue : public vtkFoamToken
{
private:
typedef vtkFoamToken Superclass;
bool IsUniformEntry;
bool Managed;
const vtkFoamEntry* UpperEntryPtr;
vtkFoamEntryValue() = delete;
vtkObjectBase* ToVTKObject() { return this->Superclass::VtkObjectPtr; }
// Delete if managed
void Clear();
void ReadList(vtkFoamIOobject& io);
public:
// Construct empty value with given parent
explicit vtkFoamEntryValue(const vtkFoamEntry* parent)
: IsUniformEntry(false)
, Managed(true)
, UpperEntryPtr(parent)
{
}
// Copy construct
vtkFoamEntryValue(vtkFoamEntryValue& val, const vtkFoamEntry* parent);
~vtkFoamEntryValue() { this->Clear(); }
// Member Functions
void SetEmptyList()
{
this->Clear();
this->IsUniformEntry = false;
this->Superclass::Type = vtkFoamToken::EMPTYLIST;
}
bool IsUniform() const noexcept { return this->IsUniformEntry; }
bool Read(vtkFoamIOobject& io);
void ReadDictionary(vtkFoamIOobject& io, const vtkFoamToken& firstKeyword);
const vtkDataArray& LabelList() const { return *this->Superclass::LabelListPtr; }
vtkDataArray& LabelList() { return *this->Superclass::LabelListPtr; }
const vtkFoamLabelListList& LabelListList() const { return *this->Superclass::LabelListListPtr; }
const vtkFloatArray& ScalarList() const { return *this->Superclass::ScalarListPtr; }
vtkFloatArray& ScalarList() { return *this->Superclass::ScalarListPtr; }
const vtkFloatArray& VectorList() const { return *this->Superclass::VectorListPtr; }
vtkFloatArray& VectorList() { return *this->Superclass::VectorListPtr; }
const vtkStringArray& StringList() const { return *this->Superclass::StringListPtr; }
vtkStringArray& StringList() { return *this->Superclass::StringListPtr; }
const vtkFoamDict& Dictionary() const { return *this->Superclass::DictPtr; }
vtkFoamDict& Dictionary() { return *this->Superclass::DictPtr; }
// Release the managed pointer, cast to specified type
template <class DataType>
DataType* ReleasePtr()
{
// Not managed = do not delete pointer in destructor
this->Managed = false;
return static_cast<DataType*>(this->Superclass::AnyPointer);
}
std::string ToString() const
{
return this->Superclass::Type == STRING ? this->Superclass::ToString() : std::string();
}
float ToFloat() const
{
return this->Superclass::IsNumeric() ? this->Superclass::To<float>() : 0.0F;
}
double ToDouble() const
{
return this->Superclass::IsNumeric() ? this->Superclass::To<double>() : 0.0;
}
// TODO is it ok to always use a 64bit int here?
vtkTypeInt64 ToInt() const
{
return this->Superclass::Type == LABEL ? this->Superclass::To<vtkTypeInt64>() : 0;
}
void MakeLabelList(const vtkIdType len, const vtkTypeInt64 val = 0)
{
this->Superclass::Type = vtkFoamToken::LABELLIST;
if (this->IsLabel64())
{
auto* array = vtkTypeInt64Array::New();
array->SetNumberOfValues(len);
array->FillValue(val);
this->Superclass::LabelListPtr = array;
}
else
{
auto* array = vtkTypeInt32Array::New();
array->SetNumberOfValues(len);
array->FillValue(static_cast<vtkTypeInt32>(val));
this->Superclass::LabelListPtr = array;
}
}
void MakeScalarList(const vtkIdType len, const float val = 0.0f)
{
this->Superclass::Type = vtkFoamToken::SCALARLIST;
this->Superclass::ScalarListPtr = vtkFloatArray::New();
this->Superclass::ScalarListPtr->SetNumberOfValues(len);
this->Superclass::ScalarListPtr->FillValue(val);
}
template <vtkFoamToken::tokenType listType, typename traitsT>
void ReadNonUniformList(vtkFoamIOobject& io);
// Dispatch reading of uniform list based on the field data type (scalar, vector etc).
// Return false if could not be dispatched
bool ReadNonUniformList(vtkFoamIOobject& io, vtkFoamTypes::dataType fieldDataType);
bool ReadField(vtkFoamIOobject& io);
// Read a list of labelLists. requires size prefix of the listList
// to be present. size of each sublist must also be present in the
// stream if the format is binary.
void ReadLabelListList(vtkFoamIOobject& io);
// Read compact labelListList which has offsets and data
void ReadCompactLabelListList(vtkFoamIOobject& io);
// Read dimensions set (always ASCII). The leading '[' has already been removed before calling.
// - can be integer or floating point
// - user-generated files may have only the first five dimensions.
// Note
// - may even have "human-readable" values such as [kg m^-1 s^-2] but they are very rare
// and we silently skip these
void ReadDimensionSet(vtkFoamIOobject& io);
};
//------------------------------------------------------------------------------
// Code: vtkFoamEntryValue
// generic reader for nonuniform lists. requires size prefix of the
// list to be present in the stream if the format is binary.
template <vtkFoamToken::tokenType listType, typename traitsT>
void vtkFoamEntryValue::ReadNonUniformList(vtkFoamIOobject& io)
{
this->SetStreamOption(io);
vtkFoamToken currToken;
currToken.SetStreamOption(io);
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
traitsT list;
this->Superclass::Type = listType;
this->Superclass::VtkObjectPtr = list.GetPointer();
if (currToken.Is<vtkTypeInt64>())
{
const vtkTypeInt64 size = currToken.To<vtkTypeInt64>();
if (size < 0)
{
throw vtkFoamError() << "List size must not be negative: size = " << size;
}
list->SetNumberOfTuples(size);
if (io.IsAsciiFormat())
{
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
// some objects have lists with only one element enclosed by {}
// e. g. simpleFoam/pitzDaily3Blocks/constant/polyMesh/faceZones
if (currToken == '{')
{
list.ReadUniformValues(io);
io.ReadExpecting('}');
return;
}
else if (currToken != '(')
{
throw vtkFoamError() << "Expected '(', found " << currToken;
}
list.ReadAsciiList(io);
io.ReadExpecting(')');
}
else
{
if (size > 0)
{
// Non-empty (binary) list - only read parentheses only when size > 0
io.ReadExpecting('(');
list.ReadBinaryList(io);
io.ReadExpecting(')');
}
}
}
else if (currToken == '(')
{
while (io.Read(currToken) && currToken != ')')
{
list.ReadValue(io, currToken);
}
list->Squeeze();
}
else
{
throw vtkFoamError() << "Expected integer or '(', found " << currToken;
}
}
// Dispatch known field/list types for non-uniform reading
bool vtkFoamEntryValue::ReadNonUniformList(vtkFoamIOobject& io, vtkFoamTypes::dataType listDataType)
{
bool handled = true;
switch (listDataType)
{
case vtkFoamTypes::BOOL_TYPE:
{
// List<bool> is read as a list of bytes (binary) or ints (ascii)
// - primary location is the flipMap entry in faceZones
this->ReadNonUniformList<BOOLLIST, //
vtkFoamRead::listTraits<vtkTypeInt8Array, vtkTypeInt8>>(io);
break;
}
case vtkFoamTypes::LABEL_TYPE:
{
if (io.IsLabel64())
{
this->ReadNonUniformList<LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt64Array, vtkTypeInt64>>(io);
}
else
{
this->ReadNonUniformList<LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt32Array, vtkTypeInt32>>(io);
}
break;
}
case vtkFoamTypes::SCALAR_TYPE:
{
if (io.IsFloat64())
{
this->ReadNonUniformList<SCALARLIST, //
vtkFoamRead::listTraits<vtkFloatArray, double>>(io);
}
else
{
this->ReadNonUniformList<SCALARLIST, //
vtkFoamRead::listTraits<vtkFloatArray, float>>(io);
}
break;
}
case vtkFoamTypes::SPH_TENSOR_TYPE:
{
if (io.IsFloat64())
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 1>>(io);
}
else
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 1>>(io);
}
break;
}
case vtkFoamTypes::VECTOR_TYPE:
{
if (io.IsFloat64())
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 3>>(io);
}
else
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 3>>(io);
}
break;
}
case vtkFoamTypes::SYMM_TENSOR_TYPE:
{
if (io.IsFloat64())
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 6>>(io);
}
else
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 6>>(io);
}
break;
}
case vtkFoamTypes::TENSOR_TYPE:
{
if (io.IsFloat64())
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 9>>(io);
}
else
{
this->ReadNonUniformList<VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 9>>(io);
}
break;
}
default:
{
handled = false;
break;
}
}
return handled;
}
bool vtkFoamEntryValue::ReadField(vtkFoamIOobject& io)
{
this->SetStreamOption(io);
// Basic field types: "boolField", "labelField", "scalarField" ...
vtkFoamTypes::dataType listDataType(vtkFoamTypes::FieldToEnum(io.GetClassName()));
try
{
if (vtkFoamTypes::IsGood(listDataType))
{
this->ReadNonUniformList(io, listDataType);
}
else
{
throw vtkFoamError() << "Unsupported field type " << io.GetClassName();
}
}
catch (const vtkFoamError& err)
{
io.SetError(err);
return false;
}
return true;
}
// Read a list of labelLists. requires size prefix of the listList
// to be present. size of each sublist must also be present in the
// stream if the format is binary.
void vtkFoamEntryValue::ReadLabelListList(vtkFoamIOobject& io)
{
// NOTE:
// when OpenFOAM writes a "faceCompactList" it automatically switches to ASCII
// if it detects that the offsets will overflow 32bits.
//
// We risk the same overflow potential when constructing a compact labelListList.
// Thus assume the worst and use 64bit sizing when reading ASCII.
const bool use64BitLabels = (io.IsLabel64() || io.IsAsciiFormat());
vtkFoamToken currToken;
currToken.SetStreamOption(io);
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (currToken.IsLabel())
{
const vtkTypeInt64 listLen = currToken.To<vtkTypeInt64>();
if (listLen < 0)
{
throw vtkFoamError() << "Illegal negative list length: " << listLen;
}
if (use64BitLabels)
{
this->LabelListListPtr = new vtkFoamLabelListList64;
}
else
{
this->LabelListListPtr = new vtkFoamLabelListList32;
}
// Initial guess for list length
this->LabelListListPtr->ResizeExact(listLen, 4 * listLen);
this->Superclass::Type = vtkFoamToken::LABELLISTLIST;
io.ReadExpecting('(');
vtkIdType nTotalElems = 0;
for (vtkTypeInt64 idx = 0; idx < listLen; ++idx)
{
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (currToken.IsLabel())
{
const vtkTypeInt64 sublistLen = currToken.To<vtkTypeInt64>();
if (sublistLen < 0)
{
throw vtkFoamError() << "Illegal negative list length: " << sublistLen;
}
// LabelListListPtr->SetOffset(idx, nTotalElems);
void* sublist = this->LabelListListPtr->WritePointer(idx, nTotalElems, sublistLen);
if (io.IsAsciiFormat())
{
io.ReadExpecting('(');
for (vtkTypeInt64 subIdx = 0; subIdx < sublistLen; ++subIdx)
{
vtkTypeInt64 value(vtkFoamReadValue<vtkTypeInt64>::ReadValue(io));
this->LabelListListPtr->SetValue(idx, subIdx, value);
}
io.ReadExpecting(')');
}
else if (sublistLen > 0)
{
// Non-empty (binary) list - only read parentheses only when size > 0
const size_t nbytes =
static_cast<size_t>(sublistLen * this->LabelListListPtr->GetLabelSize());
io.ReadExpecting('(');
io.Read(reinterpret_cast<unsigned char*>(sublist), nbytes);
io.ReadExpecting(')');
}
nTotalElems += sublistLen;
}
else if (currToken == '(')
{
this->Superclass::LabelListListPtr->SetOffset(idx, nTotalElems);
while (io.Read(currToken) && currToken != ')')
{
if (!currToken.IsLabel())
{
throw vtkFoamError() << "Expected an integer, found " << currToken;
}
this->Superclass::LabelListListPtr->InsertValue(nTotalElems++, currToken.To<int>());
++nTotalElems;
}
}
else
{
throw vtkFoamError() << "Expected integer or '(', found " << currToken;
}
}
// Set the final offset
this->Superclass::LabelListListPtr->SetOffset(listLen, nTotalElems);
// Shrink to the actually used size
this->Superclass::LabelListListPtr->ResizeData(nTotalElems);
io.ReadExpecting(')');
}
else
{
throw vtkFoamError() << "Expected integer, found " << currToken;
}
}
// Read compact labelListList which has offsets and data
void vtkFoamEntryValue::ReadCompactLabelListList(vtkFoamIOobject& io)
{
if (io.IsAsciiFormat())
{
this->ReadLabelListList(io);
return;
}
this->SetStreamOption(io);
const bool use64BitLabels = io.IsLabel64();
if (use64BitLabels)
{
this->LabelListListPtr = new vtkFoamLabelListList64;
}
else
{
this->LabelListListPtr = new vtkFoamLabelListList32;
}
this->Superclass::Type = vtkFoamToken::LABELLISTLIST;
for (int arrayI = 0; arrayI < 2; arrayI++)
{
vtkFoamToken currToken;
currToken.SetStreamOption(io);
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (currToken.IsLabel())
{
vtkTypeInt64 listLen = currToken.To<vtkTypeInt64>();
if (listLen < 0)
{
throw vtkFoamError() << "Illegal negative list length: " << listLen;
}
vtkDataArray* array = (arrayI == 0 ? this->Superclass::LabelListListPtr->GetOffsetsArray()
: this->Superclass::LabelListListPtr->GetDataArray());
array->SetNumberOfValues(static_cast<vtkIdType>(listLen));
if (listLen > 0)
{
// Non-empty (binary) list - only read parentheses only when size > 0
io.ReadExpecting('('); // Begin list
io.Read(reinterpret_cast<unsigned char*>(array->GetVoidPointer(0)),
static_cast<vtkTypeInt64>(listLen * array->GetDataTypeSize()));
io.ReadExpecting(')'); // End list
}
}
else
{
throw vtkFoamError() << "Expected integer, found " << currToken;
}
}
}
// Read dimensions set (always ASCII). The leading '[' has already been removed before calling.
// - can be integer or floating point
// - user-generated files may have only the first five dimensions.
// Note
// - may even have "human-readable" values such as [kg m^-1 s^-2] but they are very rare
// and we silently skip these
void vtkFoamEntryValue::ReadDimensionSet(vtkFoamIOobject& io)
{
const int nDimensions = 7; // There are 7 base dimensions
this->MakeScalarList(nDimensions, 0.0);
vtkFloatArray& dims = *(this->Superclass::ScalarListPtr);
// Read using tokenizer to handle scalar/label, variable lengths, and ignore human-readable
vtkFoamToken tok;
char expectEnding = ']';
bool goodInput = true;
for (int ndims = 0; ndims < nDimensions && goodInput && expectEnding; ++ndims)
{
if (!io.Read(tok))
{
goodInput = false;
}
else if (tok.IsNumeric())
{
dims.SetValue(ndims, tok.ToFloat());
}
else if (tok.IsPunctuation())
{
if (tok == expectEnding)
{
expectEnding = '\0'; // Already got the closing ']'
}
else
{
goodInput = false;
}
}
else
{
// Some unknown token type (eg, encountered human-readable units)
// - skip until ']'
while ((goodInput = io.Read(tok)))
{
if (tok.IsPunctuation() && (tok == expectEnding))
{
expectEnding = '\0'; // Already got the closing ']'
break;
}
}
break;
}
}
if (!goodInput)
{
io.ThrowStackTrace("Unexpected input while parsing dimensions array");
}
else if (expectEnding)
{
io.ReadExpecting(expectEnding);
}
}
//------------------------------------------------------------------------------
// class vtkFoamEntry
// a class that represents an entry of a dictionary. note that an
// entry can have more than one value.
struct vtkFoamEntry : public vtkFoamPtrList<vtkFoamEntryValue>
{
private:
typedef vtkFoamPtrList<vtkFoamEntryValue> Superclass;
std::string Keyword;
vtkFoamDict* UpperDictPtr;
vtkFoamEntry() = delete;
public:
vtkFoamEntry(vtkFoamDict* upperDictPtr)
: UpperDictPtr(upperDictPtr)
{
}
vtkFoamEntry(const vtkFoamEntry& entry, vtkFoamDict* upperDictPtr)
: Superclass(entry.size())
, Keyword(entry.GetKeyword())
, UpperDictPtr(upperDictPtr)
{
for (size_t i = 0; i < entry.size(); ++i)
{
(*this)[i] = new vtkFoamEntryValue(*entry[i], this);
}
}
~vtkFoamEntry() = default;
void Clear() { this->Superclass::clear(); }
const std::string& GetKeyword() const { return this->Keyword; }
void SetKeyword(const std::string& keyword) { this->Keyword = keyword; }
const vtkFoamEntryValue& FirstValue() const { return *this->Superclass::operator[](0); }
vtkFoamEntryValue& FirstValue() { return *this->Superclass::operator[](0); }
const vtkDataArray& LabelList() const { return this->FirstValue().LabelList(); }
vtkDataArray& LabelList() { return this->FirstValue().LabelList(); }
const vtkFoamLabelListList& LabelListList() const { return this->FirstValue().LabelListList(); }
const vtkFloatArray& ScalarList() const { return this->FirstValue().ScalarList(); }
vtkFloatArray& ScalarList() { return this->FirstValue().ScalarList(); }
const vtkFloatArray& VectorList() const { return this->FirstValue().VectorList(); }
vtkFloatArray& VectorList() { return this->FirstValue().VectorList(); }
const vtkFoamDict& Dictionary() const { return this->FirstValue().Dictionary(); }
vtkFoamDict& Dictionary() { return this->FirstValue().Dictionary(); }
const vtkFoamDict* GetUpperDictPtr() const { return this->UpperDictPtr; }
template <class DataType>
DataType* ReleasePtr()
{
return this->FirstValue().ReleasePtr<DataType>();
}
std::string ToString() const
{
return this->empty() ? std::string() : this->FirstValue().ToString();
}
float ToFloat() const { return this->empty() ? 0.0F : this->FirstValue().ToFloat(); }
double ToDouble() const { return this->empty() ? 0.0 : this->FirstValue().ToDouble(); }
vtkTypeInt64 ToInt() const { return this->empty() ? 0 : this->FirstValue().ToInt(); }
void ReadDictionary(vtkFoamIOobject& io)
{
this->Superclass::push_back(new vtkFoamEntryValue(this));
this->Superclass::back()->ReadDictionary(io, vtkFoamToken());
}
// read values of an entry
void Read(vtkFoamIOobject& io);
};
//------------------------------------------------------------------------------
// Code: vtkFoamDict
// Copy construct
vtkFoamDict::vtkFoamDict(const vtkFoamDict& dict, const vtkFoamDict* upperDictPtr)
: Superclass(dict.size())
, UpperDictPtr(upperDictPtr)
{
if (dict.GetType() == vtkFoamToken::DICTIONARY)
{
for (size_t i = 0; i < dict.size(); ++i)
{
(*this)[i] = new vtkFoamEntry(*dict[i], this);
}
}
else
{
Superclass::assign(dict.size(), nullptr);
}
}
// Destructor
vtkFoamDict::~vtkFoamDict()
{
if (this->Token.GetType() == vtkFoamToken::UNDEFINED)
{
for (auto* ptr : *this)
{
delete ptr;
}
}
}
// Remove top element, deleting its pointer
void vtkFoamDict::remove_back()
{
if (!Superclass::empty())
{
delete Superclass::back();
Superclass::pop_back();
}
}
// Return list of keywords - table of contents
std::vector<std::string> vtkFoamDict::Toc() const
{
std::vector<std::string> list;
list.reserve(this->size());
for (const vtkFoamEntry* eptr : *this)
{
const std::string& key = eptr->GetKeyword();
if (!key.empty()) // should not really happen anyhow
{
list.push_back(key);
}
}
return list;
}
// Search dictionary for specified keyword. Return nullptr on failure.
vtkFoamEntry* vtkFoamDict::Lookup(const std::string& keyword, const bool isPattern) const
{
if (this->Token.GetType() == vtkFoamToken::UNDEFINED)
{
int lastMatch = -1;
for (size_t i = 0; i < this->Superclass::size(); i++)
{
const std::string& key = this->operator[](i)->GetKeyword();
vtksys::RegularExpression rex;
if (key == keyword) // found
{
return this->operator[](i);
}
else if (isPattern && rex.compile(key) && rex.find(keyword) && rex.start(0) == 0 &&
rex.end(0) == keyword.size())
{
// regular expression matches full keyword
lastMatch = static_cast<int>(i);
}
}
if (lastMatch >= 0)
{
return this->operator[](lastMatch);
}
}
// Not found
return nullptr;
}
// Reads a FoamFile or a subdictionary.
// If the stream to be read is a subdictionary,
// the preceding '{' is assumed to have already been discarded.
bool vtkFoamDict::Read(vtkFoamIOobject& io, const bool isSubDict, const vtkFoamToken& firstKeyword)
{
try
{
vtkFoamToken currToken;
currToken.SetStreamOption(io);
if (firstKeyword.GetType() == vtkFoamToken::UNDEFINED)
{
// read the first token
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (isSubDict)
{
// the following if clause is for an exceptional expression
// of `LABEL{numeric}' without type prefix
// (e. g. `2{-0}' in mixedRhoE B.C. in
// rhopSonicFoam/shockTube)
if (currToken.IsNumeric())
{
this->Token = currToken;
io.ReadExpecting('}');
return true;
}
// return as empty dictionary
else if (currToken == '}')
{
return true;
}
}
else
{
// list of dictionaries is read as a usual dictionary
// polyMesh/boundary, point/face/cell-Zones
if (currToken.IsLabel())
{
io.ReadExpecting('(');
if (currToken.To<vtkTypeInt64>() > 0)
{
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
// continue to read as a usual dictionary
}
else // return as empty dictionary
{
io.ReadExpecting(')');
return true;
}
}
// some boundary files does not have the number of boundary
// patches (e.g. settlingFoam/tank3D). in this case we need to
// explicitly read the file as a dictionary.
else if (currToken == '(' && io.GetClassName() == "polyBoundaryMesh") // polyMesh/boundary
{
if (!io.Read(currToken)) // read the first keyword
{
throw vtkFoamError() << "Unexpected EOF";
}
if (currToken == ')') // return as empty dictionary
{
return true;
}
}
}
}
// if firstKeyword is given as string read the following stream as
// subdictionary
else if (firstKeyword.GetType() == vtkFoamToken::STRING)
{
this->Superclass::push_back(new vtkFoamEntry(this));
this->Superclass::back()->SetKeyword(firstKeyword.ToString());
this->Superclass::back()->ReadDictionary(io);
if (!io.Read(currToken) || currToken == '}' || currToken == ')')
{
return true;
}
}
else // quite likely an identifier
{
currToken = firstKeyword;
}
if (currToken == ';' || currToken.IsStringType())
{
// general dictionary
do
{
if (currToken.GetType() == vtkFoamToken::STRING)
{
vtkFoamEntry* previousEntry = this->Lookup(currToken.ToString());
if (previousEntry != nullptr)
{
if (io.GetInputMode() == vtkFoamFile::INPUT_MODE_MERGE)
{
if (previousEntry->FirstValue().GetType() == vtkFoamToken::DICTIONARY)
{
io.ReadExpecting('{');
previousEntry->FirstValue().Dictionary().Read(io, true); // Read as sub-dict
}
else
{
previousEntry->Clear();
previousEntry->Read(io);
}
}
else if (io.GetInputMode() == vtkFoamFile::INPUT_MODE_OVERWRITE)
{
previousEntry->Clear();
previousEntry->Read(io);
}
else // INPUT_MODE_ERROR
{
throw vtkFoamError()
<< "Found duplicated entries with keyword " << currToken.ToString();
}
}
else
{
this->Superclass::push_back(new vtkFoamEntry(this));
this->Superclass::back()->SetKeyword(currToken.ToString());
this->Superclass::back()->Read(io);
}
if (currToken == "FoamFile")
{
// Drop the FoamFile header subdictionary entry
this->remove_back();
}
}
else if (currToken.GetType() == vtkFoamToken::IDENTIFIER)
{
// substitute identifier
const std::string identifier(currToken.ToIdentifier());
for (const vtkFoamDict* uDictPtr = this;;)
{
const vtkFoamEntry* identifiedEntry = uDictPtr->Lookup(identifier);
if (identifiedEntry != nullptr)
{
if (identifiedEntry->FirstValue().GetType() != vtkFoamToken::DICTIONARY)
{
throw vtkFoamError() << "Expected dictionary for substituting entry " << identifier;
}
const vtkFoamDict& identifiedDict = identifiedEntry->FirstValue().Dictionary();
for (size_t entryI = 0; entryI < identifiedDict.size(); entryI++)
{
// I think #inputMode handling should be done here
// as well, but the genuine FoamFile parser for OF
// 1.5 does not seem to be doing it.
this->Superclass::push_back(new vtkFoamEntry(*identifiedDict[entryI], this));
}
break;
}
else
{
uDictPtr = uDictPtr->GetUpperDictPtr();
if (uDictPtr == nullptr)
{
throw vtkFoamError() << "Substituting entry " << identifier << " not found";
}
}
}
}
// skip empty entry only with ';'
} while (io.Read(currToken) && (currToken.IsStringType() || currToken == ';'));
if (currToken.GetType() == vtkFoamToken::TOKEN_ERROR || currToken == '}' || currToken == ')')
{
return true;
}
throw vtkFoamError() << "Expected keyword, closing brace, ';' or EOF, found " << currToken;
}
throw vtkFoamError() << "Expected keyword or identifier, found " << currToken;
}
catch (const vtkFoamError& err)
{
if (isSubDict)
{
throw;
}
else
{
io.SetError(err);
return false;
}
}
}
//------------------------------------------------------------------------------
// Code: vtkFoamIOobject
void vtkFoamIOobject::ReadHeader()
{
this->Superclass::ReadExpecting("FoamFile");
this->Superclass::ReadExpecting('{');
vtkFoamDict headerDict;
headerDict.SetStreamOption(this->GetStreamOption());
headerDict.Read(*this, true); // Read as sub-dict. Throw exception in case of error
const vtkFoamEntry* eptr;
// Essentials
if ((eptr = headerDict.Lookup("class")) == nullptr)
{
throw vtkFoamError() << "No 'class' in FoamFile header";
}
this->headerClassName_ = eptr->ToString();
if ((eptr = headerDict.Lookup("object")) == nullptr)
{
throw vtkFoamError() << "No 'object' in FoamFile header";
}
this->objectName_ = eptr->ToString();
if ((eptr = headerDict.Lookup("format")) == nullptr)
{
// Note (2021-03-19): may make this optional in the future, defaulting to ascii
throw vtkFoamError() << "No 'format' (ascii|binary) in FoamFile header";
}
this->SetBinaryFormat("binary" == eptr->ToString()); // case sensitive
// The arch entry has "label=(32|64) scalar=(32|64)"
// If missing/incomplete, use fallback values from reader (defined in constructor and Close)
if ((eptr = headerDict.Lookup("arch")) != nullptr)
{
const std::string archValue(eptr->ToString());
// Match "label=(32|64)"
{
auto pos = archValue.find("label=");
if (pos != std::string::npos)
{
pos += 6; // Skip past "label="
if (archValue.compare(pos, 2, "32") == 0)
{
this->SetLabel64(false);
}
else if (archValue.compare(pos, 2, "64") == 0)
{
this->SetLabel64(true);
}
}
}
// Match "scalar=(32|64)"
{
auto pos = archValue.find("scalar=");
if (pos != std::string::npos)
{
pos += 7; // Skip past "scalar="
if (archValue.compare(pos, 2, "32") == 0)
{
this->SetFloat64(false);
}
else if (archValue.compare(pos, 2, "64") == 0)
{
this->SetFloat64(true);
}
}
}
}
}
//------------------------------------------------------------------------------
// Code: vtkFoamEntryValue
vtkFoamEntryValue::vtkFoamEntryValue(vtkFoamEntryValue& value, const vtkFoamEntry* parent)
: vtkFoamToken(value)
, IsUniformEntry(value.IsUniform())
, Managed(true)
, UpperEntryPtr(parent)
{
switch (this->Superclass::Type)
{
case BOOLLIST:
case LABELLIST:
case SCALARLIST:
case VECTORLIST:
case STRINGLIST:
{
this->Superclass::VtkObjectPtr = value.ToVTKObject();
this->Superclass::VtkObjectPtr->Register(nullptr);
break;
}
case LABELLISTLIST:
{
if (value.LabelListListPtr->IsLabel64())
{
this->LabelListListPtr = new vtkFoamLabelListList64(*value.LabelListListPtr);
}
else
{
this->LabelListListPtr = new vtkFoamLabelListList32(*value.LabelListListPtr);
}
break;
}
case ENTRYVALUELIST:
{
const size_t nValues = value.EntryValuePtrs->size();
this->EntryValuePtrs = new vtkFoamPtrList<vtkFoamEntryValue>(nValues);
for (size_t valueI = 0; valueI < nValues; valueI++)
{
this->EntryValuePtrs->operator[](valueI) =
new vtkFoamEntryValue(*value.EntryValuePtrs->operator[](valueI), this->UpperEntryPtr);
}
break;
}
case DICTIONARY:
{
// UpperEntryPtr is null when called from vtkFoamDict constructor
if (this->UpperEntryPtr == nullptr)
{
this->DictPtr = nullptr;
}
else
{
this->DictPtr = new vtkFoamDict(*value.DictPtr, this->UpperEntryPtr->GetUpperDictPtr());
this->DictPtr->SetStreamOption(value.GetStreamOption());
}
break;
}
default:
break;
}
}
void vtkFoamEntryValue::Clear()
{
if (this->Managed)
{
switch (this->Superclass::Type)
{
case BOOLLIST:
case LABELLIST:
case SCALARLIST:
case VECTORLIST:
case STRINGLIST:
this->VtkObjectPtr->Delete();
break;
case LABELLISTLIST:
delete this->LabelListListPtr;
break;
case ENTRYVALUELIST:
delete this->EntryValuePtrs;
break;
case DICTIONARY:
delete this->DictPtr;
break;
default:
break;
}
}
}
// general-purpose list reader - guess the type of the list and read
// it. only supports ascii format and assumes the preceding '(' has
// already been thrown away. the reader supports nested list with
// variable lengths (e. g. `((token token) (token token token)).'
// also supports compound of tokens and lists (e. g. `((token token)
// token)') only if a list comes as the first value.
void vtkFoamEntryValue::ReadList(vtkFoamIOobject& io)
{
this->SetStreamOption(io);
vtkFoamToken currToken;
currToken.SetStreamOption(io);
io.Read(currToken);
if (currToken.IsLabel())
{
// Use lookahead to guess the list type.
// if the first token is of type LABEL it might be either an element of
// a labelList or the size of a sublist so proceed to the next token
vtkFoamToken nextToken;
nextToken.SetStreamOption(io);
if (!io.Read(nextToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (nextToken.IsPunctuation('('))
{
// A List of List: read recursively
this->Superclass::EntryValuePtrs = new vtkFoamPtrList<vtkFoamEntryValue>;
this->Superclass::EntryValuePtrs->push_back(new vtkFoamEntryValue(this->UpperEntryPtr));
this->Superclass::EntryValuePtrs->back()->SetStreamOption(*this);
this->Superclass::EntryValuePtrs->back()->ReadList(io);
this->Superclass::Type = vtkFoamToken::ENTRYVALUELIST;
}
else if (nextToken.IsPunctuation(')'))
{
// List with only one label element. Eg "(5)"
this->MakeLabelList(1, currToken.To<vtkTypeInt64>());
return; // DONE
}
else if (nextToken.IsLabel())
{
// Start of a list of labels
if (this->IsLabel64())
{
auto* array = vtkTypeInt64Array::New();
array->InsertNextValue(currToken.To<vtkTypeInt64>());
array->InsertNextValue(nextToken.To<vtkTypeInt64>());
this->Superclass::LabelListPtr = array;
}
else
{
auto* array = vtkTypeInt32Array::New();
array->InsertNextValue(currToken.To<vtkTypeInt32>());
array->InsertNextValue(nextToken.To<vtkTypeInt32>());
this->Superclass::LabelListPtr = array;
}
this->Superclass::Type = vtkFoamToken::LABELLIST;
}
else if (nextToken.IsScalar())
{
// Start of a list of scalars
this->Superclass::ScalarListPtr = vtkFloatArray::New();
this->Superclass::ScalarListPtr->InsertNextValue(currToken.To<float>());
this->Superclass::ScalarListPtr->InsertNextValue(nextToken.To<float>());
this->Superclass::Type = vtkFoamToken::SCALARLIST;
}
else
{
throw vtkFoamError() << "Expected number, '(' or ')', found " << nextToken;
}
}
else if (currToken.IsScalar())
{
// The first element of a scalar list
this->Superclass::ScalarListPtr = vtkFloatArray::New();
this->Superclass::ScalarListPtr->InsertNextValue(currToken.To<float>());
this->Superclass::Type = vtkFoamToken::SCALARLIST;
}
else if (currToken.GetType() == vtkFoamToken::STRING)
{
// if the first word is a string we have to read another token to determine
// if it is a keyword for the following dictionary
vtkFoamToken nextToken;
nextToken.SetStreamOption(io);
if (!io.Read(nextToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
if (nextToken.IsPunctuation('{'))
{
// Dictionary. Use previously read stringToken as the first keyword
if (currToken.ToString().empty())
{
throw "Empty string is invalid as a keyword for dictionary entry";
}
this->ReadDictionary(io, currToken);
// the dictionary read as list has the entry terminator ';' so
// we have to skip it
return; // DONE
}
else if (nextToken.IsPunctuation(')'))
{
// List with only one string element. Eg "(wall)"
this->Superclass::StringListPtr = vtkStringArray::New();
this->Superclass::StringListPtr->SetNumberOfValues(1);
this->Superclass::StringListPtr->SetValue(0, currToken.ToString());
this->Superclass::Type = vtkFoamToken::STRINGLIST;
return; // DONE
}
else if (nextToken.GetType() == vtkFoamToken::STRING) // list of strings
{
this->Superclass::StringListPtr = vtkStringArray::New();
this->Superclass::StringListPtr->InsertNextValue(currToken.ToString());
this->Superclass::StringListPtr->InsertNextValue(nextToken.ToString());
this->Superclass::Type = vtkFoamToken::STRINGLIST;
}
else
{
throw vtkFoamError() << "Expected string, '{' or ')', found " << nextToken;
}
}
else if (currToken == '(' || currToken == '{')
{
// List of lists or dictionaries: read recursively
this->Superclass::EntryValuePtrs = new vtkFoamPtrList<vtkFoamEntryValue>;
this->Superclass::EntryValuePtrs->push_back(new vtkFoamEntryValue(this->UpperEntryPtr));
this->Superclass::EntryValuePtrs->back()->SetStreamOption(io);
if (currToken == '(')
{
this->Superclass::EntryValuePtrs->back()->ReadList(io);
}
else // currToken == '{'
{
this->Superclass::EntryValuePtrs->back()->ReadDictionary(io, vtkFoamToken());
}
// read all the following values as arbitrary entryValues
// the alphaContactAngle b.c. in multiphaseInterFoam/damBreak4phase
// reaquires this treatment (reading by readList() is not enough)
do
{
this->Superclass::EntryValuePtrs->push_back(new vtkFoamEntryValue(this->UpperEntryPtr));
this->Superclass::EntryValuePtrs->back()->SetStreamOption(io);
this->Superclass::EntryValuePtrs->back()->Read(io);
} while (*this->Superclass::EntryValuePtrs->back() != ')' &&
*this->Superclass::EntryValuePtrs->back() != '}' &&
*this->Superclass::EntryValuePtrs->back() != ';');
if (*this->Superclass::EntryValuePtrs->back() != ')')
{
throw vtkFoamError() << "Expected ')' before " << *this->Superclass::EntryValuePtrs->back();
}
// Drop ')'
this->Superclass::EntryValuePtrs->remove_back();
this->Superclass::Type = vtkFoamToken::ENTRYVALUELIST;
return; // DONE
}
else if (currToken.IsPunctuation(')'))
{
// Empty list
this->Superclass::Type = vtkFoamToken::EMPTYLIST;
return; // DONE
}
// FIXME: may (or may not) need identifier handling
while (io.Read(currToken) && !currToken.IsPunctuation(')'))
{
if (this->Superclass::Type == vtkFoamToken::LABELLIST)
{
if (currToken.GetType() == vtkFoamToken::SCALAR)
{
// Encountered a scalar while reading a labelList - switch representation
// Need intermediate pointer since LabelListPtr and ScalarListPtr are in a union
vtkDataArray* labels = this->LabelListPtr;
const vtkIdType currLen = labels->GetNumberOfTuples();
const bool use64BitLabels = ::Is64BitArray(labels); // <- Same as io.IsLabel64()
// Copy, with append
auto* scalars = vtkFloatArray::New();
scalars->SetNumberOfValues(currLen + 1);
for (vtkIdType i = 0; i < currLen; ++i)
{
scalars->SetValue(i, static_cast<float>(GetLabelValue(labels, i, use64BitLabels)));
}
scalars->SetValue(currLen, currToken.To<float>()); // Append value
// Replace
labels->Delete();
this->Superclass::ScalarListPtr = scalars;
this->Superclass::Type = vtkFoamToken::SCALARLIST;
}
else if (currToken.IsLabel())
{
if (currToken.IsLabel64())
{
assert(vtkTypeInt64Array::FastDownCast(this->LabelListPtr) != nullptr);
static_cast<vtkTypeInt64Array*>(this->LabelListPtr)
->InsertNextValue(currToken.To<vtkTypeInt64>());
}
else
{
assert(vtkTypeInt32Array::FastDownCast(this->LabelListPtr) != nullptr);
static_cast<vtkTypeInt32Array*>(this->LabelListPtr)
->InsertNextValue(currToken.To<vtkTypeInt32>());
}
}
else
{
throw vtkFoamError() << "Expected a number, found " << currToken;
}
}
else if (this->Superclass::Type == vtkFoamToken::SCALARLIST)
{
if (currToken.IsNumeric())
{
this->Superclass::ScalarListPtr->InsertNextValue(currToken.To<float>());
}
else if (currToken == '(')
{
vtkDebugWithObjectMacro(nullptr,
"Found a list containing scalar data followed "
"by a nested list, but this reader only "
"supports nested lists that precede all "
"scalars. Discarding nested list data.");
vtkFoamEntryValue tmp(this->UpperEntryPtr);
tmp.SetStreamOption(io);
tmp.ReadList(io);
}
else
{
throw vtkFoamError() << "Expected a number, found " << currToken;
}
}
else if (this->Superclass::Type == vtkFoamToken::STRINGLIST)
{
if (currToken.GetType() == vtkFoamToken::STRING)
{
this->Superclass::StringListPtr->InsertNextValue(currToken.ToString());
}
else
{
throw vtkFoamError() << "Expected a string, found " << currToken;
}
}
else if (this->Superclass::Type == vtkFoamToken::ENTRYVALUELIST)
{
if (currToken.IsLabel())
{
// skip the number of elements to make things simple
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
}
if (currToken != '(')
{
throw vtkFoamError() << "Expected '(', found " << currToken;
}
this->Superclass::EntryValuePtrs->push_back(new vtkFoamEntryValue(this->UpperEntryPtr));
this->Superclass::EntryValuePtrs->back()->ReadList(io);
}
else
{
throw vtkFoamError() << "Unexpected token " << currToken;
}
}
if (this->Superclass::Type == vtkFoamToken::BOOLLIST)
{
this->Superclass::BoolListPtr->Squeeze();
}
else if (this->Superclass::Type == vtkFoamToken::LABELLIST)
{
this->Superclass::LabelListPtr->Squeeze();
}
else if (this->Superclass::Type == vtkFoamToken::SCALARLIST)
{
this->Superclass::ScalarListPtr->Squeeze();
}
else if (this->Superclass::Type == vtkFoamToken::STRINGLIST)
{
this->Superclass::StringListPtr->Squeeze();
}
}
// a list of dictionaries is actually read as a dictionary
void vtkFoamEntryValue::ReadDictionary(vtkFoamIOobject& io, const vtkFoamToken& firstKeyword)
{
this->Superclass::DictPtr = new vtkFoamDict(this->UpperEntryPtr->GetUpperDictPtr());
this->DictPtr->SetStreamOption(io);
this->Superclass::Type = vtkFoamToken::DICTIONARY;
this->Superclass::DictPtr->Read(io, true, firstKeyword);
}
// Guess the type of the given entry value and read it
// Return:
// - true on success
// - false if end of entry (';') encountered during parsing composite entry value
bool vtkFoamEntryValue::Read(vtkFoamIOobject& io)
{
this->SetStreamOption(io);
vtkFoamToken currToken;
currToken.SetStreamOption(io);
if (!io.Read(currToken))
{
throw vtkFoamError() << "Unexpected EOF";
}
// List types
if (currToken == '{')
{
this->ReadDictionary(io, vtkFoamToken());
return true;
}
else if (currToken == '(')
{
this->ReadList(io);
return true;
}
else if (currToken == '[')
{
this->ReadDimensionSet(io);
return true;
}
vtkFoamTypes::dataType listDataType(vtkFoamTypes::NO_TYPE);
if (currToken == "uniform")
{
if (!io.Read(currToken))
{
throw vtkFoamError() << "Expected a uniform value or a list, found unexpected EOF";
}
if (currToken == '(')
{
this->ReadList(io);
}
else if (currToken == ';')
{
this->Superclass::operator=("uniform");
return false;
}
else if (currToken.IsNumeric() || currToken.GetType() == vtkFoamToken::STRING)
{
this->Superclass::operator=(currToken);
}
else // unexpected punctuation token
{
throw vtkFoamError() << "Expected number, string or ( for uniform entry, found " << currToken;
}
this->IsUniformEntry = true;
}
else if (currToken == "nonuniform")
{
if (!io.Read(currToken))
{
throw vtkFoamError() << "Expected list type specifier for nonuniform entry, found EOF";
}
this->IsUniformEntry = false;
if (currToken.GetType() == vtkFoamToken::STRING)
{
// List types: "List<label>", "List<scalar>" ...
listDataType = vtkFoamTypes::ListToEnum(currToken.ToString());
}
if (vtkFoamTypes::IsGood(listDataType))
{
this->ReadNonUniformList(io, listDataType);
}
else if (currToken.IsLabel(0))
{
// An empty list doesn't have a list type specifier
this->Superclass::Type = vtkFoamToken::EMPTYLIST;
if (io.IsAsciiFormat())
{
io.ReadExpecting('(');
io.ReadExpecting(')');
}
}
else if (currToken == ';')
{
this->Superclass::operator=("nonuniform");
return false;
}
else
{
throw vtkFoamError() << "Unsupported nonuniform list type " << currToken;
}
}
else if (currToken.GetType() == vtkFoamToken::STRING &&
(listDataType = vtkFoamTypes::ListToEnum(currToken.ToString())) != vtkFoamTypes::NO_TYPE)
{
// Lists without a uniform/nonuniform keyword - eg, zones
this->IsUniformEntry = false;
this->ReadNonUniformList(io, listDataType);
}
else if (currToken.IsPunctuation() || currToken.IsNumeric() || currToken.IsStringType())
{
this->Superclass::operator=(currToken);
}
return true;
}
// read values of an entry
void vtkFoamEntry::Read(vtkFoamIOobject& io)
{
while (true)
{
this->Superclass::push_back(new vtkFoamEntryValue(this));
this->Superclass::back()->SetStreamOption(io);
if (!this->Superclass::back()->Read(io))
{
break;
}
if (this->Superclass::size() >= 2)
{
vtkFoamEntryValue& secondLastValue =
*this->Superclass::operator[](this->Superclass::size() - 2);
if (secondLastValue.IsLabel())
{
const vtkTypeInt64 listLen = secondLastValue.To<vtkTypeInt64>();
vtkFoamEntryValue& lastValue = *this->Superclass::back();
// a zero-sized nonuniform list without prefixing "nonuniform"
// keyword nor list type specifier (i. e. `0()';
// e. g. simpleEngine/0/polyMesh/pointZones) requires special
// care (one with nonuniform prefix is treated within
// vtkFoamEntryValue::read()). still this causes erroneous
// behavior for `0 nonuniform 0()' but this should be extremely
// rare
if (lastValue.GetType() == vtkFoamToken::EMPTYLIST && listLen == 0)
{
// Remove last value, and mark new last value as EMPTYLIST
this->remove_back();
this->Superclass::back()->SetEmptyList();
}
// for an exceptional expression of `LABEL{LABELorSCALAR}' without
// type prefix (e. g. `2{-0}' in mixedRhoE B.C. in
// rhopSonicFoam/shockTube)
else if (lastValue.GetType() == vtkFoamToken::DICTIONARY)
{
if (lastValue.Dictionary().GetType() == vtkFoamToken::LABEL)
{
const vtkTypeInt64 val = lastValue.Dictionary().GetToken().ToInt();
// Remove the last two values
this->remove_back();
this->remove_back();
// Make new labelList
this->Superclass::push_back(new vtkFoamEntryValue(this));
this->Superclass::back()->SetStreamOption(io);
this->Superclass::back()->MakeLabelList(listLen, val);
}
else if (lastValue.Dictionary().GetType() == vtkFoamToken::SCALAR)
{
const float val = lastValue.Dictionary().GetToken().ToFloat();
// Remove the last two values
this->remove_back();
this->remove_back();
// Make new scalarList
this->Superclass::push_back(new vtkFoamEntryValue(this));
this->Superclass::back()->SetStreamOption(io);
this->Superclass::back()->MakeScalarList(listLen, val);
}
}
// Cleanup for tokenized string lists, the parser will handle something like
//
// keyword 2(abc def);
//
// as LABEL + STRINGLIST : so drop the label when the sizes are identical
// limit the fixup to entries that contains no other tokens (2021-03-19)
else if (lastValue.GetType() == vtkFoamToken::STRINGLIST)
{
if (listLen == lastValue.StringList().GetNumberOfValues() &&
this->Superclass::size() == 2)
{
// The label (list size parsing remnant) can be removed.
std::swap(this->Superclass::operator[](this->Superclass::size() - 1),
this->Superclass::operator[](this->Superclass::size() - 2));
this->remove_back();
}
}
}
}
if (this->Superclass::back()->GetType() == vtkFoamToken::IDENTIFIER)
{
// Substitute identifier
const std::string identifier(this->Superclass::back()->ToIdentifier());
this->remove_back();
for (const vtkFoamDict* uDictPtr = this->UpperDictPtr;;)
{
const vtkFoamEntry* identifiedEntry = uDictPtr->Lookup(identifier);
if (identifiedEntry != nullptr)
{
for (size_t valueI = 0; valueI < identifiedEntry->size(); valueI++)
{
this->Superclass::push_back(
new vtkFoamEntryValue(*identifiedEntry->operator[](valueI), this));
this->back()->SetStreamOption(io);
}
break;
}
else
{
uDictPtr = uDictPtr->GetUpperDictPtr();
if (uDictPtr == nullptr)
{
throw vtkFoamError() << "substituting entry " << identifier << " not found";
}
}
}
}
else if (*this->Superclass::back() == ';')
{
// Drop entry terminator
this->remove_back();
break;
}
else if (this->Superclass::back()->GetType() == vtkFoamToken::DICTIONARY)
{
// subdictionary is not suffixed by an entry terminator ';'
break;
}
else if (*this->Superclass::back() == '}' || *this->Superclass::back() == ')')
{
throw vtkFoamError() << "Unmatched " << *this->Superclass::back();
}
}
}
//------------------------------------------------------------------------------
// vtkOpenFOAMReaderPrivate constructor and destructor
vtkOpenFOAMReaderPrivate::vtkOpenFOAMReaderPrivate()
{
// Time information
this->TimeValues = vtkDoubleArray::New();
this->TimeNames = vtkStringArray::New();
this->TimeStep = 0;
this->TimeStepOld = TIMEINDEX_UNVISITED;
this->TopologyTimeIndex = TIMEINDEX_UNVISITED;
// Selection
this->InternalMeshSelectionStatus = 0;
this->InternalMeshSelectionStatusOld = 0;
// Mesh dimensions
this->NumPoints = 0;
this->NumInternalFaces = 0;
this->NumFaces = 0;
this->NumCells = 0;
this->VolFieldFiles = vtkStringArray::New();
this->DimFieldFiles = vtkStringArray::New();
this->AreaFieldFiles = vtkStringArray::New();
this->PointFieldFiles = vtkStringArray::New();
this->LagrangianFieldFiles = vtkStringArray::New();
// For creating cell-to-point translated data
this->BoundaryPointMap = nullptr;
this->AllBoundaries = nullptr;
this->AllBoundariesPointMap = nullptr;
this->InternalPoints = nullptr;
// For caching mesh
this->InternalMesh = nullptr;
this->BoundaryMesh = nullptr;
this->BoundaryPointMap = nullptr;
this->FaceOwner = nullptr;
this->FaceNeigh = nullptr;
this->cellZoneMap.reset(vtkFoamZones::CELL);
this->faceZoneMap.reset(vtkFoamZones::FACE);
this->pointZoneMap.reset(vtkFoamZones::POINT);
this->PointZoneMesh = nullptr;
this->FaceZoneMesh = nullptr;
this->CellZoneMesh = nullptr;
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
// For polyhedral decomposition
this->NumTotalAdditionalCells = 0;
this->AdditionalCellIds = nullptr;
this->NumAdditionalCells = nullptr;
this->AdditionalCellPoints = nullptr;
#endif
#if VTK_FOAMFILE_FINITE_AREA
this->areaMeshMap.reset(vtkFoamZones::FACE);
this->AreaMesh = nullptr;
#endif
this->Parent = nullptr;
}
vtkOpenFOAMReaderPrivate::~vtkOpenFOAMReaderPrivate()
{
this->TimeValues->Delete();
this->TimeNames->Delete();
this->VolFieldFiles->Delete();
this->DimFieldFiles->Delete();
this->AreaFieldFiles->Delete();
this->PointFieldFiles->Delete();
this->LagrangianFieldFiles->Delete();
this->ClearMeshes();
}
void vtkOpenFOAMReaderPrivate::ClearInternalMeshes()
{
if (this->FaceOwner != nullptr)
{
this->FaceOwner->Delete();
this->FaceOwner = nullptr;
}
if (this->FaceNeigh != nullptr)
{
this->FaceNeigh->Delete();
this->FaceNeigh = nullptr;
}
if (this->InternalMesh != nullptr)
{
this->InternalMesh->Delete();
this->InternalMesh = nullptr;
}
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
// For polyhedral decomposition
this->NumTotalAdditionalCells = 0;
if (this->AdditionalCellIds != nullptr)
{
this->AdditionalCellIds->Delete();
this->AdditionalCellIds = nullptr;
}
if (this->NumAdditionalCells != nullptr)
{
this->NumAdditionalCells->Delete();
this->NumAdditionalCells = nullptr;
}
delete this->AdditionalCellPoints;
this->AdditionalCellPoints = nullptr;
#endif
}
void vtkOpenFOAMReaderPrivate::ClearZoneMeshes()
{
this->cellZoneMap.clearAll();
this->faceZoneMap.clearAll();
this->pointZoneMap.clearAll();
if (this->CellZoneMesh != nullptr)
{
this->CellZoneMesh->Delete();
this->CellZoneMesh = nullptr;
}
if (this->FaceZoneMesh != nullptr)
{
this->FaceZoneMesh->Delete();
this->FaceZoneMesh = nullptr;
}
if (this->PointZoneMesh != nullptr)
{
this->PointZoneMesh->Delete();
this->PointZoneMesh = nullptr;
}
}
void vtkOpenFOAMReaderPrivate::ClearAreaMeshes()
{
#if VTK_FOAMFILE_FINITE_AREA
this->areaMeshMap.clearAll();
if (this->AreaMesh != nullptr)
{
this->AreaMesh->Delete();
this->AreaMesh = nullptr;
}
#endif
}
void vtkOpenFOAMReaderPrivate::ClearBoundaryMeshes()
{
if (this->BoundaryMesh != nullptr)
{
this->BoundaryMesh->Delete();
this->BoundaryMesh = nullptr;
}
delete this->BoundaryPointMap;
this->BoundaryPointMap = nullptr;
if (this->InternalPoints != nullptr)
{
this->InternalPoints->Delete();
this->InternalPoints = nullptr;
}
if (this->AllBoundaries != nullptr)
{
this->AllBoundaries->Delete();
this->AllBoundaries = nullptr;
}
if (this->AllBoundariesPointMap != nullptr)
{
this->AllBoundariesPointMap->Delete();
this->AllBoundariesPointMap = nullptr;
}
}
void vtkOpenFOAMReaderPrivate::ClearMeshes()
{
this->ClearInternalMeshes();
this->ClearBoundaryMeshes();
this->ClearZoneMeshes();
this->ClearAreaMeshes();
}
//------------------------------------------------------------------------------
// Time handling
double vtkOpenFOAMReaderPrivate::GetTimeValue() const
{
const vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
if (this->TimeStep < 0 || this->TimeStep >= nTimes)
{
return 0;
}
return TimeValues->GetValue(this->TimeStep);
}
void vtkOpenFOAMReaderPrivate::SetTimeValue(double requestedTime)
{
const vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
if (nTimes)
{
int nearestIndex = 0;
double deltaT = fabs(this->TimeValues->GetValue(0) - requestedTime);
for (vtkIdType timei = 1; timei < nTimes; ++timei)
{
const double diff = fabs(this->TimeValues->GetValue(timei) - requestedTime);
if (diff < deltaT)
{
deltaT = diff;
nearestIndex = timei;
}
}
this->SetTimeStep(nearestIndex); // set Modified() if TimeStep changed
}
}
void vtkOpenFOAMReaderPrivate::PrintTimes(std::ostream& os, vtkIndent indent, bool full) const
{
const vtkIdType nTimes = this->TimeNames->GetNumberOfTuples();
os << indent << "Times: " << nTimes << " (";
if ((nTimes > 5) && !full)
{
os << this->TimeNames->GetValue(0) << ' ' << this->TimeNames->GetValue(1) << " .. "
<< this->TimeNames->GetValue(nTimes - 1);
}
else
{
for (vtkIdType timei = 0; timei < nTimes; ++timei)
{
if (timei)
{
os << ' ';
}
os << this->TimeNames->GetValue(timei);
}
}
os << ')' << endl;
os << indent << "Step: " << this->TimeStep << " (";
if (this->TimeStep < 0 || this->TimeStep >= nTimes)
{
os << "n/a";
}
else
{
os << this->TimeNames->GetValue(this->TimeStep);
}
os << ')' << endl;
}
//------------------------------------------------------------------------------
// Gather the necessary information to create a path to the data
bool vtkOpenFOAMReaderPrivate::MakeInformationVector(const std::string& casePath,
const std::string& controlDictPath, const std::string& procName, vtkOpenFOAMReader* parent,
bool requirePolyMesh)
{
vtkFoamDebug(<< "MakeInformationVector (" << this->RegionName << "/" << procName
<< ") polyMesh:" << requirePolyMesh << " - list times\n");
this->CasePath = casePath;
this->ProcessorName = procName;
this->Parent = parent;
bool scanTimeDirs = true;
bool listOk = true; // Tentative return value
#if VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT
if (!controlDictPath.empty() && this->Parent->GetListTimeStepsByControlDict())
{
// Predict timesteps from controlDict values
vtkFoamError errors = this->ListTimeDirectoriesByControlDict(controlDictPath);
listOk = errors.empty();
if (listOk)
{
scanTimeDirs = false;
}
else
{
// Fall through to list by directory
vtkWarningMacro(<< errors << " - listing by instance instead");
}
}
#endif // VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT
if (scanTimeDirs)
{
// List timesteps by directory
listOk = this->ListTimeDirectoriesByInstances();
}
if (!listOk)
{
return false;
}
// does not seem to be required even if number of timesteps reduced
// upon refresh since ParaView rewinds TimeStep to 0, but for precaution
const vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
if (nTimes)
{
if (this->TimeStep >= nTimes)
{
this->SetTimeStep(static_cast<int>(nTimes - 1));
}
}
else
{
this->SetTimeStep(0);
}
// Clear any cached knowledge
this->PolyMeshTimeIndexPoints.clear();
this->PolyMeshTimeIndexFaces.clear();
// Normally expect a (default region) polyMesh/, but not for multi-region cases
if (requirePolyMesh)
{
this->PopulateMeshTimeIndices();
}
return true;
}
//------------------------------------------------------------------------------
bool vtkOpenFOAMReaderPrivate::MakeInformationVector(const std::string& casePath,
const std::string& procName, vtkOpenFOAMReader* parent, vtkStringArray* timeNames,
vtkDoubleArray* timeValues, bool requirePolyMesh)
{
vtkFoamDebug(<< "MakeInformationVector (" << this->RegionName << "/" << procName
<< ") polyMesh:" << requirePolyMesh << " - inherit times\n");
this->CasePath = casePath;
this->ProcessorName = procName;
this->Parent = parent;
this->TimeNames->Delete();
this->TimeNames = timeNames;
this->TimeNames->Register(nullptr);
this->TimeValues->Delete();
this->TimeValues = timeValues;
this->TimeValues->Register(nullptr);
// does not seem to be required even if number of timesteps reduced
// upon refresh since ParaView rewinds TimeStep to 0, but for precaution
const vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
if (nTimes)
{
if (this->TimeStep >= nTimes)
{
this->SetTimeStep(static_cast<int>(nTimes - 1));
}
}
else
{
this->SetTimeStep(0);
}
// Clear any cached knowledge
this->PolyMeshTimeIndexPoints.clear();
this->PolyMeshTimeIndexFaces.clear();
// Normally expect a (default region) polyMesh/, but not for multi-region cases
if (requirePolyMesh)
{
this->PopulateMeshTimeIndices();
}
return true;
}
//------------------------------------------------------------------------------
// Copy time instances information and create mesh times
void vtkOpenFOAMReaderPrivate::SetupInformation(const std::string& casePath,
const std::string& regionName, const std::string& procName, vtkOpenFOAMReaderPrivate* master,
bool requirePolyMesh)
{
vtkFoamDebug(<< "SetupInformation (" << this->RegionName << "/" << procName
<< ") polyMesh:" << requirePolyMesh << "\n");
// Copy parent, path and timestep information from master
this->CasePath = casePath;
this->RegionName = regionName;
this->ProcessorName = procName;
this->Parent = master->Parent;
this->TimeValues->Delete();
this->TimeValues = master->TimeValues;
this->TimeValues->Register(nullptr);
this->TimeNames->Delete();
this->TimeNames = master->TimeNames;
this->TimeNames->Register(nullptr);
// Clear any cached knowledge
this->PolyMeshTimeIndexPoints.clear();
this->PolyMeshTimeIndexFaces.clear();
// Normally expect a (default region) polyMesh/, but not for multi-region cases
if (requirePolyMesh)
{
this->PopulateMeshTimeIndices();
}
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReaderPrivate::AddFieldName(
const std::string& fieldName, const std::string& fieldType, bool isLagrangian)
{
if (fieldName.empty() || fieldType.empty())
{
return;
}
size_t len = fieldType.find("Field");
bool isInternalField = false;
if (len == std::string::npos)
{
return;
}
else if ((len + 5) == fieldType.size())
{
// OK: ends_with("Field")
}
else if (fieldType.compare(len, std::string::npos, "Field::Internal") == 0)
{
// OK: ends_with("Field::Internal")
// but only valid for volScalarField::Internal, etc
isInternalField = true;
if (isLagrangian || (fieldType.compare(0, 3, "vol") != 0))
{
return;
}
}
else
{
// Some other (unknown) type - ignore
return;
}
if (isLagrangian)
{
// Lagrangian (point) fields: labelField, scalarField, vectorField, ...
const auto fieldDataType(vtkFoamTypes::FieldToEnum(fieldType));
if (fieldDataType != vtkFoamTypes::NO_TYPE)
{
// NB: Cloud has labelField too
this->LagrangianFieldFiles->InsertNextValue(fieldName);
}
return;
}
size_t prefix = 0;
vtkStringArray* target = nullptr;
if (fieldType.compare(0, 3, "vol") == 0) // starts_with("vol")
{
// Volume fields: volScalarField, volVectorField, ...
// or Dimensioned (internal) fields: volScalarField::Internal, ...
prefix = 3;
len -= prefix;
target = this->VolFieldFiles;
if (isInternalField)
{
target = this->DimFieldFiles;
}
}
else if (fieldType.compare(0, 4, "area") == 0) // starts_with("area")
{
// Mesh area fields: areaScalarField, areaVectorField, ...
prefix = 4;
len -= prefix;
target = this->AreaFieldFiles;
}
else if (fieldType.compare(0, 5, "point") == 0) // starts_with("point")
{
// Mesh point fields: pointScalarField, pointVectorField, ...
prefix = 5;
len -= prefix;
target = this->PointFieldFiles;
}
if (target != nullptr)
{
const auto fieldDataType(vtkFoamTypes::FieldToEnum(fieldType.substr(prefix, len)));
if (vtkFoamTypes::IsScalar(fieldDataType) || vtkFoamTypes::IsVectorSpace(fieldDataType))
{
target->InsertNextValue(fieldName);
}
}
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReaderPrivate::GetFieldNames(const std::string& tempPath, bool isLagrangian)
{
// Open the directory and get num of files
vtkNew<vtkDirectory> directory;
if (!directory->Open(tempPath.c_str()))
{
// No data
return;
}
// loop over all files and locate valid fields
const vtkIdType nFieldFiles = directory->GetNumberOfFiles();
for (vtkIdType fileI = 0; fileI < nFieldFiles; ++fileI)
{
const std::string fieldFile(directory->GetFile(fileI));
const auto len = fieldFile.length();
if (!len || (fieldFile[len - 1] == '~') || directory->FileIsDirectory(fieldFile.c_str()))
{
continue;
}
#if VTK_FOAMFILE_IGNORE_FIELD_RESTART
else if (len > 2 && (fieldFile[len - 2] == '_') && (fieldFile[len - 1] == '0'))
{
// Exclude "*_0" restart files
continue;
}
#endif
else
{
// Exclude various backup extensions - cf. Foam::fileName::isBackup()
auto sep = fieldFile.rfind('.');
if (sep != std::string::npos)
{
++sep;
if (!fieldFile.compare(sep, std::string::npos, "bak") ||
!fieldFile.compare(sep, std::string::npos, "BAK") ||
!fieldFile.compare(sep, std::string::npos, "old") ||
!fieldFile.compare(sep, std::string::npos, "save"))
{
continue;
}
}
}
// Note: for isLagrangian, could reject "positions" and "coordinates" instead of opening files
vtkFoamIOobject io(this->CasePath, this->Parent);
if (io.Open(tempPath + "/" + fieldFile)) // file exists and readable
{
this->AddFieldName(fieldFile, io.GetClassName(), isLagrangian);
}
}
// delay Squeeze of inserted objects until SortFieldFiles()
}
//------------------------------------------------------------------------------
// Locate lagrangian clouds
void vtkOpenFOAMReaderPrivate::LocateLagrangianClouds(const std::string& timePath)
{
const std::string lagrangianDir(timePath + this->RegionPath() + "/lagrangian");
vtkNew<vtkDirectory> directory;
if (directory->Open(lagrangianDir.c_str()))
{
// Search for clouds (OF 1.5 and later format)
const vtkIdType nFiles = directory->GetNumberOfFiles();
for (vtkIdType filei = 0; filei < nFiles; ++filei)
{
const std::string cloudName(directory->GetFile(filei));
if (cloudName == "." || cloudName == ".." || !directory->FileIsDirectory(cloudName.c_str()))
{
continue;
}
const std::string cloudPath(lagrangianDir + "/" + cloudName);
const std::string displayName(this->RegionPrefix() + "lagrangian/" + cloudName);
// lagrangian positions. there are many concrete class names
// e. g. Cloud<parcel>, basicKinematicCloud etc.
vtkFoamIOobject io(this->CasePath, this->Parent);
if (io.OpenOrGzip(cloudPath + "/positions") && io.GetObjectName() == "positions" &&
io.GetClassName().find("Cloud") != std::string::npos)
{
// Append unique
if (this->LagrangianPaths->LookupValue(displayName) == -1)
{
this->LagrangianPaths->InsertNextValue(displayName);
}
this->GetFieldNames(cloudPath, true);
this->Parent->PatchDataArraySelection->AddArray(displayName.c_str());
}
}
this->LagrangianPaths->Squeeze();
}
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReaderPrivate::SortFieldFiles(vtkStringArray* selections, vtkStringArray* files)
{
// The object (field) name in the FoamFile header should always correspond
// to the filename (without any trailing .gz etc)
const vtkIdType nFiles = files->GetNumberOfValues();
vtkNew<vtkStringArray> names;
names->SetNumberOfValues(nFiles);
for (vtkIdType i = 0; i < nFiles; ++i)
{
std::string name(files->GetValue(i));
const auto ending = name.rfind(".gz");
if (ending != std::string::npos)
{
name.erase(ending);
}
names->SetValue(i, name);
}
names->Squeeze();
files->Squeeze();
vtkSortDataArray::Sort(names, files);
for (vtkIdType i = 0; i < nFiles; ++i)
{
selections->InsertNextValue(names->GetValue(i));
}
}
//------------------------------------------------------------------------------
// Set contents from dictionary information read from the polyMesh/boundary file
bool vtkFoamBoundaries::update(const vtkFoamDict& dict)
{
auto& patches = *this;
patches.clearAll();
patches.resize(dict.size());
auto& inGroups = patches.groups;
const auto nBoundaries = static_cast<vtkIdType>(patches.size());
vtkIdType endFace = -1; // for sanity check
vtkTypeInt64 nBoundaryFaces = 0;
for (vtkIdType patchi = 0; patchi < nBoundaries; ++patchi)
{
// The name/dictionary, from "polyMesh/boundary" entry
const vtkFoamEntry* eptr = dict[patchi];
const std::string& patchName = eptr->GetKeyword();
const vtkFoamDict& patchDict = eptr->Dictionary();
// The patch entry to populate
vtkFoamPatch& patch = patches[patchi];
patch.index_ = patchi;
patch.offset_ = nBoundaryFaces;
patch.type_ = vtkFoamPatch::GEOMETRICAL;
patch.owner_ = true; // Patch owner (processor patch)
patch.name_ = patchName;
if ((eptr = patchDict.Lookup("type")) == nullptr)
{
this->error() // Report errors
<< "No 'type' entry found for patch: " << patch.name_;
return false;
}
const std::string patchTypeName(eptr->ToString());
if ((eptr = patchDict.Lookup("startFace")) == nullptr)
{
this->error() // Report errors
<< "No 'startFace' entry found for patch: " << patch.name_;
return false;
}
patch.start_ = eptr->ToInt();
if ((eptr = patchDict.Lookup("nFaces")) == nullptr)
{
this->error() // Report errors
<< "No 'nFaces' entry found for patch: " << patch.name_;
return false;
}
patch.size_ = eptr->ToInt();
// Size, consistency sanity checks
if (patch.start_ < 0 || patch.size_ < 0)
{
this->error() // Report errors
<< "The startFace:" << patch.start_ << " or nFaces:" << patch.size_
<< " are negative for patch " << patch.name_;
return false;
}
if (endFace >= 0 && endFace != patch.start_)
{
this->error() // Report errors
<< "The end face number " << (endFace - 1) << " of patch " << patches[patchi - 1].name_
<< " is inconsistent with start face number " << patch.start_ << " of patch "
<< patch.name_;
return false;
}
endFace = patch.endFace(); // <- The startFace for the next patch index
// If the basic type of the patch is one of the following the
// point-filtered values at patches are overridden by patch values
if (patchTypeName == "patch" || patchTypeName == "wall" || patchTypeName == "mappedWall")
{
patch.type_ = vtkFoamPatch::PHYSICAL;
nBoundaryFaces += patch.size_;
}
else if (patchTypeName == "processor" || patchTypeName == "processorCyclic")
{
patch.type_ = vtkFoamPatch::PROCESSOR;
nBoundaryFaces += patch.size_;
// Note owner/neighbour relationship for processor patch
const auto* ownptr = patchDict.Lookup("myProcNo");
const auto* neiptr = patchDict.Lookup("neighbProcNo");
if (ownptr != nullptr && neiptr != nullptr && // Safety
ownptr->FirstValue().IsLabel() && neiptr->FirstValue().IsLabel())
{
const vtkTypeInt64 own = ownptr->FirstValue().ToInt();
const vtkTypeInt64 nei = neiptr->FirstValue().ToInt();
patch.owner_ = (own < nei);
}
}
// Handle inGroups which could have this type of content:
// - inGroups (name1 .. nameN);
// - inGroups 2(name1 name2);
// but never for processor boundaries (potential clutter or false positives)
if ((eptr = patchDict.Lookup("inGroups")) != nullptr && patch.type_ != vtkFoamPatch::PROCESSOR)
{
for (const vtkFoamEntryValue* subentry : *eptr)
{
if (subentry && subentry->GetType() == vtkFoamToken::STRINGLIST)
{
// Yes this is really needed, VTK constness is a bit odd
vtkStringArray& groupNames = const_cast<vtkStringArray&>(subentry->StringList());
const vtkIdType nGroups = groupNames.GetNumberOfValues();
for (vtkIdType groupi = 0; groupi < nGroups; ++groupi)
{
const std::string& groupName = groupNames.GetValue(groupi);
inGroups[groupName].push_back(patchi);
}
}
}
}
}
// Could also use HasError() for an additional sanity check
return true;
}
//------------------------------------------------------------------------------
// Binary search for patch index for a given face label
// Return -1 for internal face or out-of-bounds
vtkIdType vtkFoamBoundaries::whichPatch(vtkIdType faceIndex) const
{
if (this->empty() || // Safety/short-circuit
(faceIndex < this->front().startFace()) || // Internal mesh face
(faceIndex >= (this->back().endFace()))) // Out-of-bounds
{
return -1;
}
// Binary search like std::lower_bound, but slightly modified
auto first = this->begin();
const auto last = this->end();
auto count = this->size();
while (count > 0)
{
auto iter = first;
auto step = count / 2;
iter += step;
if (iter->start_ <= faceIndex) // NB: must include start in the comparison
{
first = ++iter;
count -= step + 1;
}
else
{
count = step;
}
}
return (first != last) ? first->index_ : -1;
}
//------------------------------------------------------------------------------
// Create field data lists and cell/point array selection lists
int vtkOpenFOAMReaderPrivate::MakeMetaDataAtTimeStep(vtkStringArray* cellSelectionNames,
vtkStringArray* pointSelectionNames, vtkStringArray* lagrangianSelectionNames,
bool listNextTimeStep)
{
vtkFoamDebug(<< "MakeMetaDataAtTimeStep (" << this->RegionName << "/" << this->ProcessorName
<< ")\n");
if (!this->HasPolyMesh())
{
// Ignore a region without a mesh, but will normally be precluded earlier
vtkWarningMacro("Called MakeMetaDataAtTimeStep without a mesh.");
return 1;
}
// Track topology change
const bool topoChanged = (this->TopologyTimeIndex < -1 ||
(this->TopologyTimeIndex != this->PolyMeshTimeIndexFaces[this->TimeStep]));
this->TopologyTimeIndex = this->PolyMeshTimeIndexFaces[this->TimeStep];
// Change in topology or selection, may need to update boundaries
{
auto& patches = this->BoundaryDict;
// User selection changed
const bool selectChanged = topoChanged ||
(this->Parent->PatchDataArraySelection->GetMTime() != this->Parent->PatchSelectionMTimeOld);
bool addInternalSelection = false;
// Read contents of polyMesh/boundary to update patch definitions
if (topoChanged)
{
patches.clearAll();
const bool isSubRegion = !this->RegionName.empty();
auto boundaryEntriesPtr(this->GetPolyMeshFile("boundary", isSubRegion));
if (boundaryEntriesPtr)
{
if (!patches.update(*boundaryEntriesPtr))
{
vtkErrorMacro(<< patches.error());
return 0;
}
// On topology change, add the internal mesh by default
addInternalSelection = true;
}
else if (isSubRegion)
{
// Could be missing polyMesh/boundary for sub-region
return 0;
}
}
// The internal mesh - set/check status
if (selectChanged)
{
const std::string displayName(this->RegionPrefix() + NAME_INTERNALMESH);
if (addInternalSelection)
{
this->Parent->PatchDataArraySelection->AddArray(displayName.c_str());
}
this->InternalMeshSelectionStatus =
(this->Parent->PatchDataArraySelection->ArrayExists(displayName.c_str()) &&
this->Parent->GetPatchArrayStatus(displayName.c_str()));
}
// The boundary mesh - change in user selection or topology
if (selectChanged)
{
// Can perhaps do more with preserving old selections
// and check which boundaries actually changed
//
// decltype(patches.groupActive) groupActiveOld;
// decltype(patches.patchActive) patchActiveOld;
// decltype(patches.patchActiveByGroup) patchActiveByGroupOld;
//
// std::swap(groupActiveOld, patches.groupActive);
// std::swap(patchActiveOld, patches.patchActive);
// std::swap(patchActiveByGroupOld, patches.patchActiveByGroup);
// For now, simply start afresh
patches.clearSelections();
// Patch groups (sorted)
const auto& inGroups = patches.groups;
for (auto citer = inGroups.begin(), endIter = inGroups.end(); citer != endIter; ++citer)
{
const std::string& groupName = citer->first;
const std::string displayName(this->RegionPrefix() + "group/" + groupName);
if (this->Parent->PatchDataArraySelection->ArrayExists(displayName.c_str()))
{
if (this->Parent->GetPatchArrayStatus(displayName.c_str()))
{
// Selected by group
patches.enableGroup(groupName);
}
}
else
{
// Add to list with selection status == off.
this->Parent->PatchDataArraySelection->DisableArray(displayName.c_str());
}
}
// Individual patches
for (vtkFoamPatch& patch : patches)
{
const std::string& patchName = patch.name_;
// always hide processor patches for decomposed cases to keep
// vtkAppendCompositeDataLeaves happy
if (patch.type_ == vtkFoamPatch::PROCESSOR && !this->ProcessorName.empty())
{
continue;
}
const std::string displayName(this->RegionPrefix() + "patch/" + patchName);
if (this->Parent->PatchDataArraySelection->ArrayExists(displayName.c_str()))
{
if (this->Parent->GetPatchArrayStatus(displayName.c_str()))
{
// Selected by patch
patches.enablePatch(patch.index_);
}
}
else
{
// Add to list with selection status == off.
// The patch is added to list even if its size is zero
this->Parent->PatchDataArraySelection->DisableArray(displayName.c_str());
}
}
}
}
// Add scalars and vectors to metadata
std::string timePath(this->CurrentTimePath());
// do not do "RemoveAllArrays()" to accumulate array selections
// this->CellDataArraySelection->RemoveAllArrays();
this->VolFieldFiles->Initialize();
this->DimFieldFiles->Initialize();
this->AreaFieldFiles->Initialize();
this->PointFieldFiles->Initialize();
this->GetFieldNames(timePath + this->RegionPath());
this->LagrangianFieldFiles->Initialize();
if (listNextTimeStep)
{
this->LagrangianPaths->Initialize();
}
this->LocateLagrangianClouds(timePath);
// if the requested timestep is 0 then we also look at the next
// timestep to add extra objects that don't exist at timestep 0 into
// selection lists. Note the ObjectNames array will be recreated in
// RequestData() so we don't have to worry about duplicated fields.
if (listNextTimeStep && this->TimeStep == 0)
{
int nextTimeStep = this->TimeStep + 1;
if (nextTimeStep < this->TimeValues->GetNumberOfTuples())
{
timePath = this->TimePath(nextTimeStep);
this->GetFieldNames(timePath + this->RegionPath());
// Lagrangian clouds are likely missing at time 0
// - could also lookahead multiple time steps (if desired)
if (!this->LagrangianPaths->GetNumberOfTuples())
{
this->LocateLagrangianClouds(timePath);
}
}
}
// sort array names. volFields first, followed by internal fields
this->SortFieldFiles(cellSelectionNames, this->VolFieldFiles);
this->SortFieldFiles(cellSelectionNames, this->DimFieldFiles);
#if VTK_FOAMFILE_FINITE_AREA
this->SortFieldFiles(cellSelectionNames, this->AreaFieldFiles);
#endif
this->SortFieldFiles(pointSelectionNames, this->PointFieldFiles);
this->SortFieldFiles(lagrangianSelectionNames, this->LagrangianFieldFiles);
return 1;
}
//------------------------------------------------------------------------------
// List time directories according to system/controlDict
#if VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT
vtkFoamError vtkOpenFOAMReaderPrivate::ListTimeDirectoriesByControlDict(
const std::string& controlDictPath)
{
// Note: use double (not float) to handle time values precisely
// Open and check if controlDict is readable
vtkFoamIOobject io(this->CasePath, this->Parent);
if (!io.Open(controlDictPath))
{
return vtkFoamError() << "Error opening " << io.GetFileName() << ": " << io.GetError();
}
vtkFoamDict dict;
if (!dict.Read(io))
{
return vtkFoamError() << "Error reading line " << io.GetLineNumber() << " of "
<< io.GetFileName() << ": " << io.GetError();
}
if (dict.GetType() != vtkFoamToken::DICTIONARY)
{
return vtkFoamError() << "The file " << io.GetFileName() << " is not a dictionary";
}
const vtkFoamEntry* eptr;
// Calculate time step increment based on type of run
if ((eptr = dict.Lookup("writeControl")) == nullptr)
{
return vtkFoamError() << "No 'writeControl' in " << io.GetFileName();
}
const std::string writeControl(eptr->ToString());
// When (adjustTimeStep, writeControl) == (on, adjustableRunTime) or (off, timeStep)
// list by time instances in the case directory otherwise
// (different behaviour from paraFoam)
bool adjustTimeStep = false;
if ((eptr = dict.Lookup("adjustTimeStep")) != nullptr)
{
const std::string sw(eptr->ToString());
// Switch values for 'true' (cf. src/OpenFOAM/db/Switch/Switch.C)
adjustTimeStep = (sw == "on" || sw == "yes" || sw == "y" || sw == "true" || sw == "t");
}
if (adjustTimeStep)
{
if (writeControl.compare(0, 10, "adjustable") != 0)
{
// Require "adjustable" or "adjustableRunTime"
return vtkFoamError() << "Used adjustTimeStep, but writeControl was not adjustable: "
<< writeControl;
}
}
else if (writeControl != "timeStep")
{
return vtkFoamError() << "Use fixed time step, but writeControl was not 'timeStep': "
<< writeControl;
}
if ((eptr = dict.Lookup("startTime")) == nullptr)
{
return vtkFoamError() << "No 'startTime' in controlDict";
}
const double startTime = eptr->ToDouble();
if ((eptr = dict.Lookup("endTime")) == nullptr)
{
return vtkFoamError() << "No 'endTime' in controlDict";
}
const double endTime = eptr->ToDouble();
if ((eptr = dict.Lookup("deltaT")) == nullptr)
{
return vtkFoamError() << "No 'deltaT' in controlDict";
}
const double deltaT = eptr->ToDouble();
if ((eptr = dict.Lookup("writeInterval")) == nullptr)
{
return vtkFoamError() << "No 'writeInterval' in controlDict";
}
const double writeInterval = eptr->ToDouble();
// "timeFormat" is optional - default is "general"
std::string timeFormat("general");
if ((eptr = dict.Lookup("timeFormat")) != nullptr)
{
timeFormat = eptr->ToString();
}
// Default timePrecision is 6
const vtkTypeInt64 timePrecision =
((eptr = dict.Lookup("timePrecision")) != nullptr ? eptr->ToInt() : 6);
double timeStepIncrement = 1;
if (writeControl == "timeStep")
{
timeStepIncrement = writeInterval * deltaT;
}
else if (writeControl == "runTime" || writeControl == "adjustableRunTime")
{
timeStepIncrement = writeInterval;
}
else
{
return vtkFoamError() << "Cannot determine time-step for writeControl: " << writeControl;
}
// How many timesteps there should be, rounded up
const int numTimeSteps = 1 + static_cast<int>((endTime - startTime) / timeStepIncrement + 0.5);
// Determine time name based on Foam::Time::timeName()
// cf. src/OpenFOAM/db/Time/Time.C
std::ostringstream parser;
#ifdef _MSC_VER
bool correctExponent = true;
#endif
if (timeFormat == "general" || timeFormat.empty())
{
parser.setf(std::ios_base::fmtflags(0), std::ios_base::floatfield);
}
else if (timeFormat == "fixed")
{
parser.setf(std::ios_base::fmtflags(std::ios_base::fixed), std::ios_base::floatfield);
#ifdef _MSC_VER
correctExponent = false;
#endif
}
else if (timeFormat == "scientific")
{
parser.setf(std::ios_base::fmtflags(std::ios_base::scientific), std::ios_base::floatfield);
}
else
{
parser.setf(std::ios_base::fmtflags(0), std::ios_base::floatfield);
}
parser.precision(timePrecision);
this->TimeValues->Initialize();
this->TimeNames->Initialize();
for (int timeStepi = 0; timeStepi < numTimeSteps; ++timeStepi)
{
parser.str("");
const double timeValue = startTime + timeStepIncrement * timeStepi;
parser << timeValue;
std::string timeName(parser.str());
#ifdef _MSC_VER
// workaround for format difference in MSVC++:
// remove an extra 0 from exponent
if (correctExponent)
{
const auto pos = timeName.find('e');
if (pos != std::string::npos && timeName.length() >= pos + 3 && timeName[pos + 2] == '0')
{
timeName.erase(pos + 2, 1);
}
}
#endif
// Add the time steps that actually exist to steps
// allows the run to be stopped short of controlDict spec
// allows for removal of timesteps
if (vtksys::SystemTools::FileIsDirectory(this->CasePath + timeName))
{
this->TimeNames->InsertNextValue(timeName);
this->TimeValues->InsertNextValue(timeValue);
}
// necessary for reading the case/0 directory whatever the timeFormat is
// based on Foam::Time::operator++() cf. src/OpenFOAM/db/Time/Time.C
else if ((fabs(timeValue) < 1.0e-14L) // 10*SMALL
&& vtksys::SystemTools::FileIsDirectory(this->CasePath + "0"))
{
this->TimeNames->InsertNextValue("0");
this->TimeValues->InsertNextValue(0);
}
}
// If there are no other times and "constant/" directory exists - treat as startTime
if (this->TimeValues->GetNumberOfTuples() == 0 &&
vtksys::SystemTools::FileIsDirectory(this->CasePath + "constant"))
{
parser.str("");
parser << startTime;
this->TimeNames->InsertNextValue(parser.str());
this->TimeValues->InsertNextValue(startTime);
}
this->TimeValues->Squeeze();
this->TimeNames->Squeeze();
return vtkFoamError();
}
#endif // VTK_FOAMFILE_LIST_TIMEDIRS_BY_CONTROLDICT
//------------------------------------------------------------------------------
// List time directories by searching all valid time instances in a
// case directory
bool vtkOpenFOAMReaderPrivate::ListTimeDirectoriesByInstances()
{
// Open the case directory
vtkNew<vtkDirectory> dir;
if (!dir->Open(this->CasePath.c_str()))
{
vtkErrorMacro(<< "Can't open directory " << this->CasePath);
return false;
}
const bool ignore0Dir = this->Parent->GetSkipZeroTime();
// Detect all directories in the case directory with names convertible to numbers
this->TimeNames->Initialize();
this->TimeValues->Initialize();
const vtkIdType nFiles = dir->GetNumberOfFiles();
for (vtkIdType filei = 0; filei < nFiles; ++filei)
{
const char* timeName = dir->GetFile(filei);
// Perform string checks first (quick) before any filestat
// - expect numbers starting with a digit or [-+]
// - no numbers starting with '.', since they would be hidden files!
// Optionally ignore "0/" directory
if (ignore0Dir && timeName[0] == '0' && timeName[1] == '\0')
{
continue;
}
bool isNumber = (std::isdigit(timeName[0]) || timeName[0] == '+' || timeName[0] == '-');
for (const char* p = (timeName + 1); *p && isNumber; ++p)
{
const char c = *p;
isNumber = (std::isdigit(c) || c == '+' || c == '-' || c == '.' || c == 'E' || c == 'e');
}
if (isNumber)
{
// Convert to a number
char* endptr = nullptr;
const double timeValue = std::strtod(timeName, &endptr);
// Check for good parse of entire string, and filestat that it is a directory
if (timeName != endptr && *endptr == '\0' && dir->FileIsDirectory(timeName))
{
this->TimeNames->InsertNextValue(timeName);
this->TimeValues->InsertNextValue(timeValue);
}
}
}
// If there are no other times, use "constant/" directory
if (this->TimeValues->GetNumberOfTuples() == 0 && dir->FileIsDirectory("constant"))
{
this->TimeNames->InsertNextValue("constant");
this->TimeValues->InsertNextValue(0);
}
this->TimeNames->Squeeze();
this->TimeValues->Squeeze();
vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
if (nTimes > 1)
{
// Sort the detected time directories
vtkSortDataArray::Sort(this->TimeValues, this->TimeNames);
// Remove duplicate time values (e.g. "0" and "0.000")
for (vtkIdType timeI = 1; timeI < nTimes; ++timeI)
{
// compare by exact match
if (this->TimeValues->GetValue(timeI - 1) == this->TimeValues->GetValue(timeI))
{
vtkWarningMacro(<< "Different time directories with the same time value "
<< this->TimeNames->GetValue(timeI - 1) << " and "
<< this->TimeNames->GetValue(timeI) << " found. "
<< this->TimeNames->GetValue(timeI) << " will be ignored.");
this->TimeValues->RemoveTuple(timeI);
// vtkStringArray does not have RemoveTuple()
for (vtkIdType oldTimei = timeI + 1; oldTimei < nTimes; ++oldTimei)
{
this->TimeNames->SetValue(oldTimei - 1, this->TimeNames->GetValue(oldTimei));
}
--nTimes;
this->TimeNames->Resize(nTimes);
}
}
}
return true;
}
//------------------------------------------------------------------------------
// Print changes in mesh times (debugging only)
#if VTK_FOAMFILE_DEBUG
void vtkOpenFOAMReaderPrivate::PrintMeshTimes(
const char* name, const std::vector<vtkIdType>& indexer) const
{
// Yes this is really needed, VTK constness is a bit odd
auto& timeNames = const_cast<vtkStringArray&>(*this->TimeNames);
std::cerr << name << " times (";
vtkIdType prev = TIMEINDEX_UNVISITED;
for (const auto idx : indexer)
{
if (idx == TIMEINDEX_UNVISITED)
{
std::cerr << " .";
}
else if (prev != idx)
{
std::cerr << ' ';
if (idx < 0)
{
std::cerr << "constant";
}
else
{
std::cerr << timeNames.GetValue(idx);
}
}
prev = idx;
}
std::cerr << " )\n";
}
#endif
//------------------------------------------------------------------------------
// Local Function
namespace
{
// Update mesh instance for change
// - Changed: set to current time index
// - No change: set to previous time instance
// - No change and first instance: it is "constant" time instance
inline void UpdateTimeInstance(std::vector<vtkIdType>& list, vtkIdType i, bool changed)
{
list[i] = changed ? i : (i == 0) ? TIMEINDEX_CONSTANT : list[i - 1];
}
} // End anonymous namespace
//------------------------------------------------------------------------------
// create a Lookup Table containing the location of the points
// and faces files for each time steps mesh
void vtkOpenFOAMReaderPrivate::PopulateMeshTimeIndices()
{
auto& faces = this->PolyMeshTimeIndexFaces;
auto& points = this->PolyMeshTimeIndexPoints;
// Ensure consistent sizing
const vtkIdType nTimes = this->TimeValues->GetNumberOfTuples();
faces.resize(nTimes, TIMEINDEX_UNVISITED);
points.resize(nTimes, TIMEINDEX_UNVISITED);
for (vtkIdType timeIter = 0; timeIter < nTimes; ++timeIter)
{
// The mesh directory for this timestep
const std::string meshDir(this->TimeRegionPath(timeIter) + "/polyMesh/");
const bool hasMeshDir = vtksys::SystemTools::FileIsDirectory(meshDir);
const bool topoChanged = hasMeshDir && vtkFoamFile::IsFile(meshDir + "faces", true);
const bool pointsMoved = hasMeshDir && vtkFoamFile::IsFile(meshDir + "points", true);
UpdateTimeInstance(faces, timeIter, topoChanged);
UpdateTimeInstance(points, timeIter, pointsMoved);
}
#if VTK_FOAMFILE_DEBUG
PrintMeshTimes("faces", faces);
PrintMeshTimes("points", points);
#endif
}
//------------------------------------------------------------------------------
// Read the points file into a vtkFloatArray
//
// - sets NumPoints
vtkSmartPointer<vtkFloatArray> vtkOpenFOAMReaderPrivate::ReadPointsFile(
const std::string& timeRegionDir)
{
// Assume failure
this->NumPoints = 0;
vtkFoamIOobject io(this->CasePath, this->Parent);
// Read polyMesh/points
if (!io.OpenOrGzip(timeRegionDir + "/polyMesh/points"))
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError());
return nullptr;
}
vtkSmartPointer<vtkFloatArray> pointArray;
try
{
vtkFoamEntryValue dict(nullptr);
if (io.IsFloat64())
{
dict.ReadNonUniformList<vtkFoamToken::VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 3>>(io);
}
else
{
dict.ReadNonUniformList<vtkFoamToken::VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 3>>(io);
}
// Capture content as smart pointer
pointArray.TakeReference(dict.ReleasePtr<vtkFloatArray>());
}
catch (const vtkFoamError& err)
{
vtkErrorMacro("Mesh points data are neither 32 nor 64 bit, or some other "
"parse error occurred while reading points. Failed at line "
<< io.GetLineNumber() << " of " << io.GetFileName() << ": " << err);
return nullptr;
}
assert(pointArray.Get() != nullptr);
// The number of points
this->NumPoints = pointArray->GetNumberOfTuples();
return pointArray;
}
//------------------------------------------------------------------------------
// Read the faces into a vtkFoamLabelListList
//
// - sets NumFaces, clears NumInternalFaces
//
// Return meshFaces
std::unique_ptr<vtkFoamLabelListList> vtkOpenFOAMReaderPrivate::ReadFacesFile(
const std::string& timeRegionDir)
{
// Assume failure
this->NumFaces = 0;
this->NumInternalFaces = 0;
vtkFoamIOobject io(this->CasePath, this->Parent);
// Read polyMesh/faces
if (!io.OpenOrGzip(timeRegionDir + "/polyMesh/faces"))
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError()
<< ". If you are trying to read a parallel decomposed case, "
"set Case Type to Decomposed Case.");
return nullptr;
}
std::unique_ptr<vtkFoamLabelListList> meshFaces;
try
{
vtkFoamEntryValue dict(nullptr);
dict.SetStreamOption(io);
if (io.GetClassName() == "faceCompactList")
{
dict.ReadCompactLabelListList(io);
}
else
{
dict.ReadLabelListList(io);
}
// Capture content
meshFaces.reset(dict.ReleasePtr<vtkFoamLabelListList>());
}
catch (const vtkFoamError& err)
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << err);
return nullptr;
}
if (meshFaces)
{
this->NumFaces = meshFaces->GetNumberOfElements();
}
return meshFaces;
}
//------------------------------------------------------------------------------
// Read owner, neighbour files
// - sets NumFaces and NumInternalFaces, and NumCells
bool vtkOpenFOAMReaderPrivate::ReadOwnerNeighbourFiles(const std::string& timeRegionDir)
{
// Assume failure
this->NumCells = 0;
vtkFoamIOobject io(this->CasePath, this->Parent);
// Read polyMesh/owner
if (!io.OpenOrGzip(timeRegionDir + "/polyMesh/owner"))
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError());
return false;
}
const bool use64BitLabels = io.IsLabel64();
// Count cells by tracking the max cell id seen
vtkTypeInt64 nCells = -1;
{
vtkFoamEntryValue ownerDict(nullptr);
ownerDict.SetStreamOption(io);
try
{
if (use64BitLabels)
{
ownerDict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt64Array, vtkTypeInt64>>(io);
}
else
{
ownerDict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt32Array, vtkTypeInt32>>(io);
}
}
catch (const vtkFoamError& err)
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << err);
return false;
}
io.Close();
// Store owner faces
this->FaceOwner = ownerDict.ReleasePtr<vtkDataArray>();
const vtkIdType nFaces = this->FaceOwner->GetNumberOfTuples();
// Check for max cell, check validity
for (vtkIdType facei = 0; facei < nFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(this->FaceOwner, facei, use64BitLabels);
if (celli < 0)
{
vtkErrorMacro(<< "Illegal cell label in owner addressing. Face " << facei);
return false;
}
nCells = std::max(nCells, celli);
}
}
// Read polyMesh/neighbour
if (!io.OpenOrGzip(timeRegionDir + "/polyMesh/neighbour"))
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError());
return false;
}
if (use64BitLabels != io.IsLabel64())
{
vtkErrorMacro(<< "owner/neighbour with different label-size: should not happen"
<< io.GetCasePath());
return false;
}
{
vtkFoamEntryValue neighDict(nullptr);
neighDict.SetStreamOption(io);
try
{
if (use64BitLabels)
{
neighDict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt64Array, vtkTypeInt64>>(io);
}
else
{
neighDict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt32Array, vtkTypeInt32>>(io);
}
}
catch (const vtkFoamError& err)
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << err);
return false;
}
io.Close();
// Store neighbour faces
this->FaceNeigh = neighDict.ReleasePtr<vtkDataArray>();
const vtkIdType nFaces = this->FaceOwner->GetNumberOfTuples();
if (nFaces == this->FaceNeigh->GetNumberOfTuples())
{
// Extremely old meshes had identical size for owner/neighbour and -1 padding
vtkIdType nInternalFaces = 0;
for (vtkIdType facei = 0; facei < nFaces; ++facei)
{
if (GetLabelValue(this->FaceNeigh, facei, use64BitLabels) < 0)
{
break;
}
else
{
++nInternalFaces;
}
}
this->FaceNeigh->Resize(nInternalFaces);
}
const vtkIdType nInternalFaces = this->FaceNeigh->GetNumberOfTuples();
// Check for max cell, check validity
for (vtkIdType facei = 0; facei < nInternalFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(this->FaceNeigh, facei, use64BitLabels);
if (celli < 0)
{
vtkErrorMacro(<< "Illegal cell label in neighbour addressing. Face " << facei);
return false;
}
nCells = std::max(nCells, celli);
}
}
this->NumCells = static_cast<vtkIdType>(++nCells);
// Size checks
if (this->NumCells == 0)
{
vtkWarningMacro(<< "The mesh contains no cells");
}
const vtkIdType nFaces = this->FaceOwner->GetNumberOfTuples();
const vtkIdType nInternalFaces = this->FaceNeigh->GetNumberOfTuples();
if (nFaces < nInternalFaces)
{
vtkErrorMacro(<< "Number of owner faces " << nFaces
<< " not equal or greater than number of neighbour faces " << nInternalFaces);
return false;
}
// Set or check number of mesh faces
if (this->NumFaces == 0)
{
this->NumFaces = nFaces;
}
else if (this->NumFaces != nFaces)
{
vtkErrorMacro(<< "Expected " << this->NumFaces << " faces, but owner had " << nFaces
<< " faces");
return false;
}
this->NumInternalFaces = nInternalFaces;
return true;
}
//------------------------------------------------------------------------------
// Create meshCells from owner/neighbour information
//
// - sets NumFaces and NumInternalFaces (again), optionally NumCells
std::unique_ptr<vtkFoamLabelListList> vtkOpenFOAMReaderPrivate::CreateCellFaces()
{
if (!this->FaceOwner)
{
vtkErrorMacro(<< "Cannot create cell faces without face owner information");
return nullptr;
}
if (!this->FaceNeigh)
{
vtkErrorMacro(<< "Cannot create cell faces without face neighbour information");
return nullptr;
}
const bool use64BitLabels = ::Is64BitArray(this->FaceOwner);
const vtkDataArray& faceOwner = *this->FaceOwner;
const vtkDataArray& faceNeigh = *this->FaceNeigh;
const vtkIdType nFaces = faceOwner.GetNumberOfTuples();
const vtkIdType nInternalFaces = faceNeigh.GetNumberOfTuples();
// Extra safety (consistency)
this->NumFaces = nFaces;
this->NumInternalFaces = nInternalFaces;
// Recalculate number of cells if needed
if (this->NumCells == 0)
{
vtkTypeInt64 nCells = -1;
for (vtkIdType facei = 0; facei < nFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(&faceOwner, facei, use64BitLabels);
nCells = std::max(nCells, celli);
}
for (vtkIdType facei = 0; facei < nInternalFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(&faceNeigh, facei, use64BitLabels);
nCells = std::max(nCells, celli);
}
// Set the number of cells
this->NumCells = static_cast<vtkIdType>(++nCells);
}
// The number of cells
const vtkTypeInt64 nCells = this->NumCells;
// Total number of cell faces
const vtkTypeInt64 nTotalCellFaces =
static_cast<vtkTypeInt64>(nFaces) + static_cast<vtkTypeInt64>(nInternalFaces);
// Create meshCells. Avoid 32bit overflow for nTotalCellFaces
std::unique_ptr<vtkFoamLabelListList> meshCells;
if (use64BitLabels || (VTK_TYPE_INT32_MAX < nTotalCellFaces))
{
meshCells.reset(new vtkFoamLabelListList64);
}
else
{
meshCells.reset(new vtkFoamLabelListList32);
}
auto& cells = *meshCells;
cells.ResizeExact(nCells, nTotalCellFaces);
cells.ResetOffsets(); // Fill offsets with zero
// Count number of faces for each cell
// Establish the per-cell face count
{
// Accumulate offsets into slot *above*
constexpr vtkIdType cellIndexOffset = 1;
for (vtkIdType facei = 0; facei < nFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(&faceOwner, facei, use64BitLabels);
cells.IncrementOffset(cellIndexOffset + celli);
}
for (vtkIdType facei = 0; facei < nInternalFaces; ++facei)
{
const vtkTypeInt64 celli = GetLabelValue(&faceNeigh, facei, use64BitLabels);
cells.IncrementOffset(cellIndexOffset + celli);
}
// Reduce per-cell face count -> start offsets
vtkTypeInt64 currOffset = 0;
for (vtkIdType celli = 1; celli <= nCells; ++celli)
{
currOffset += cells.GetBeginOffset(celli);
cells.SetOffset(celli, currOffset);
}
}
// Deep copy of offsets into a temporary array
std::unique_ptr<vtkFoamLabelListList> tmpAddr;
if (cells.IsLabel64())
{
tmpAddr.reset(new vtkFoamLabelListList64);
}
else
{
tmpAddr.reset(new vtkFoamLabelListList32);
}
tmpAddr->ResizeExact(nCells, 1);
tmpAddr->GetOffsetsArray()->DeepCopy(cells.GetOffsetsArray());
// Add face numbers to cell-faces list, using tmpAddr offsets to manage the locations
for (vtkIdType facei = 0; facei < nInternalFaces; ++facei)
{
// owner
{
const vtkTypeInt64 celli = GetLabelValue(&faceOwner, facei, use64BitLabels);
const vtkTypeInt64 next = tmpAddr->GetBeginOffset(celli);
tmpAddr->IncrementOffset(celli);
cells.SetValue(next, facei);
}
// neighbour
{
const vtkTypeInt64 celli = GetLabelValue(&faceNeigh, facei, use64BitLabels);
const vtkTypeInt64 next = tmpAddr->GetBeginOffset(celli);
tmpAddr->IncrementOffset(celli);
cells.SetValue(next, facei);
}
}
for (vtkIdType facei = nInternalFaces; facei < nFaces; ++facei)
{
// owner
{
const vtkTypeInt64 celli = GetLabelValue(&faceOwner, facei, use64BitLabels);
const vtkTypeInt64 next = tmpAddr->GetBeginOffset(celli);
tmpAddr->IncrementOffset(celli);
cells.SetValue(next, facei);
}
}
return meshCells;
}
//------------------------------------------------------------------------------
bool vtkOpenFOAMReaderPrivate::CheckFaceList(const vtkFoamLabelListList& faces)
{
const vtkIdType nFaces = faces.GetNumberOfElements();
const vtkIdType nPoints = this->NumPoints;
vtkFoamLabelListList::CellType face;
for (vtkIdType facei = 0; facei < nFaces; ++facei)
{
faces.GetCell(facei, face);
if (face.size() < 3)
{
vtkErrorMacro(<< "Face " << facei << " is bad. Has " << face.size()
<< " points but requires 3 or more");
return false;
}
for (const vtkTypeInt64 pointi : face)
{
if (pointi < 0 || pointi >= nPoints)
{
vtkErrorMacro(<< "Face " << facei << " is bad. Point " << pointi
<< " out of range: " << nPoints << " points");
return false;
}
}
}
return true;
}
//------------------------------------------------------------------------------
// determine cell shape and insert the cell into the mesh
// hexahedron, prism, pyramid, tetrahedron and decompose polyhedron
void vtkOpenFOAMReaderPrivate::InsertCellsToGrid(
vtkUnstructuredGrid* internalMesh, std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr,
const vtkFoamLabelListList& meshFaces, vtkIdList* cellLabels
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
,
vtkIdTypeArray* additionalCells, vtkFloatArray* pointArray
#endif
)
{
// Scratch arrays
vtkFoamStackVector<vtkIdType, 256> cellPoints; // For inserting primitive cell points
vtkFoamStackVector<vtkIdType, 1024> polyPoints; // For inserting polyhedral faces and sizes
vtkFoamLabelListList::CellType cellFaces; // For analyzing cell types (shapes)
vtkFoamLabelListList::CellType facePoints; // For processing individual cell faces
const bool faceOwner64Bit = ::Is64BitArray(this->FaceOwner);
const bool cellLabels64Bit = faceOwner64Bit; // reasonable assumption
const vtkIdType nCells = (cellLabels == nullptr ? this->NumCells : cellLabels->GetNumberOfIds());
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
// Local variable for polyhedral decomposition
vtkIdType nAdditionalPoints = 0;
if (additionalCells && cellLabels) // sanity check
{
vtkErrorMacro(<< "Decompose polyhedral is not supported on mesh subset");
return;
}
#endif
if (!nCells)
{
return;
}
if (!meshCellsPtr)
{
meshCellsPtr = this->CreateCellFaces();
}
const auto& meshCells = *meshCellsPtr;
for (vtkIdType celli = 0; celli < nCells; ++celli)
{
vtkIdType cellId = celli;
if (cellLabels != nullptr)
{
cellId = cellLabels->GetId(celli);
if (cellId < 0 || cellId >= this->NumCells)
{
// sanity check. bad values should have been removed before this
vtkWarningMacro(<< "cellLabels id " << cellId << " exceeds the number of cells " << nCells);
continue;
}
}
meshCells.GetCell(cellId, cellFaces);
// determine type of the cell
// cf. src/OpenFOAM/meshes/meshShapes/cellMatcher/{hex|prism|pyr|tet}-
// Matcher.C
int cellType = VTK_POLYHEDRON; // Fallback value
if (cellFaces.size() == 6)
{
// Check for HEXAHEDRON
bool allQuads = false;
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
allQuads = (meshFaces.GetSize(cellFaces[facei]) == 4);
if (!allQuads)
{
break;
}
}
if (allQuads)
{
cellType = VTK_HEXAHEDRON;
}
}
else if (cellFaces.size() == 5)
{
// Check for WEDGE or PYRAMID
int nTris = 0, nQuads = 0;
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
const vtkIdType nPoints = meshFaces.GetSize(cellFaces[facei]);
if (nPoints == 3)
{
++nTris;
}
else if (nPoints == 4)
{
++nQuads;
}
else
{
break;
}
}
if (nTris == 2 && nQuads == 3)
{
cellType = VTK_WEDGE;
}
else if (nTris == 4 && nQuads == 1)
{
cellType = VTK_PYRAMID;
}
}
else if (cellFaces.size() == 4)
{
// Check for TETRA
bool allTris = false;
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
allTris = (meshFaces.GetSize(cellFaces[facei]) == 3);
if (!allTris)
{
break;
}
}
if (allTris)
{
cellType = VTK_TETRA;
}
}
// Cell shape constructor based on the one implemented by Terry
// Jordan, with lots of improvements. Not as elegant as the one in
// OpenFOAM but it's simple and works reasonably fast.
// Note: faces are flipped around their 0 point (as per OpenFOAM)
// to keep predictable face point ordering
// OpenFOAM "hex" | vtkHexahedron
if (cellType == VTK_HEXAHEDRON)
{
int nCellPoints = 0;
// Get first face in correct order
{
const vtkTypeInt64 cellFacei = cellFaces[0];
const bool isOwner = (cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
// Add face0 to cell points - flip owner to point inwards
cellPoints[nCellPoints++] = facePoints[0];
if (isOwner)
{
for (int fp = 3; fp > 0; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
else
{
for (int fp = 1; fp < 4; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
}
const vtkIdType baseFacePoint0 = cellPoints[0];
const vtkIdType baseFacePoint2 = cellPoints[2];
vtkTypeInt64 cellOppositeFaceI = -1;
vtkTypeInt64 pivotMeshPoint = -1;
int dupPoint = -1;
for (int facei = 1; facei < 5; ++facei) // Skip face 0 (already done) and 5 (fallback)
{
const vtkTypeInt64 cellFacei = cellFaces[facei];
const bool isOwner = (cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
int foundDup = -1;
int pointI = 0;
for (; pointI < 4; ++pointI) // each face point
{
// matching two points in base face is enough to find a
// duplicated point since neighboring faces share two
// neighboring points (i. e. an edge)
if (baseFacePoint0 == facePoints[pointI])
{
foundDup = 0;
break;
}
else if (baseFacePoint2 == facePoints[pointI])
{
foundDup = 2;
break;
}
}
if (foundDup == -1)
{
// No duplicate points found, this is the opposite face
cellOppositeFaceI = cellFacei;
if (pivotMeshPoint >= 0)
{
break;
}
}
else if (pivotMeshPoint == -1)
{
// Has duplicate point(s) - find the pivot point if still unknown
dupPoint = foundDup;
const vtkTypeInt64 faceNextPoint = facePoints[(pointI + 1) % 4];
const vtkTypeInt64 facePrevPoint = facePoints[(3 + pointI) % 4];
// if the next point of the faceI-th face matches the
// previous point of the base face use the previous point
// of the faceI-th face as the pivot point; or use the
// next point otherwise
if (faceNextPoint == (isOwner ? cellPoints[1 + foundDup] : cellPoints[3 - foundDup]))
{
pivotMeshPoint = facePrevPoint;
}
else
{
pivotMeshPoint = faceNextPoint;
}
if (cellOppositeFaceI >= 0)
{
break;
}
}
}
// if the opposite face is not found until face 4, face 5 is
// always the opposite face
if (cellOppositeFaceI == -1)
{
cellOppositeFaceI = cellFaces[5];
}
// Find the pivot point in opposite face
meshFaces.GetCell(cellOppositeFaceI, facePoints);
int pivotPointI = 0;
for (; pivotPointI < 4; ++pivotPointI)
{
if (pivotMeshPoint == facePoints[pivotPointI])
{
break;
}
}
// shift the pivot point if the point corresponds to point 2
// of the base face
if (dupPoint == 2)
{
pivotPointI = (pivotPointI + 2) % 4;
}
// Copy last (opposite) face in correct order. Copy into cellPoints list
{
const bool isOwner =
(cellId == GetLabelValue(this->FaceOwner, cellOppositeFaceI, faceOwner64Bit));
if (isOwner)
{
for (int fp = pivotPointI; fp < 4; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
for (int fp = 0; fp < pivotPointI; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
else
{
for (int fp = pivotPointI; fp >= 0; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
for (int fp = 3; fp > pivotPointI; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
}
// Add HEXAHEDRON (hex) cell to the mesh
internalMesh->InsertNextCell(VTK_HEXAHEDRON, 8, cellPoints.data());
}
// OpenFOAM "prism" | vtkWedge
// - cell construction similar to "hex",
// but the OpenFOAM face0 points inwards (like hex) and VTK face0 points outwards
// so point ordering is reversed
else if (cellType == VTK_WEDGE)
{
int nCellPoints = 0;
// Find the base face number and get it in correct order
int baseFaceId = 0;
{
for (int facei = 0; facei < 5; ++facei)
{
if (meshFaces.GetSize(cellFaces[facei]) == 3)
{
baseFaceId = facei;
break;
}
}
const vtkTypeInt64 cellFacei = cellFaces[baseFaceId];
const bool isOwner = (cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
// Add face0 to cell points - flip neighbour to point outwards
// - OpenFOAM face0 points inwards
// - VTK face0 points outwards
cellPoints[nCellPoints++] = facePoints[0];
if (isOwner)
{
for (int fp = 1; fp < 3; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
else
{
for (int fp = 2; fp > 0; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
}
const vtkIdType baseFacePoint0 = cellPoints[0];
const vtkIdType baseFacePoint2 = cellPoints[2];
vtkTypeInt64 cellOppositeFaceI = -1;
vtkTypeInt64 pivotMeshPoint = -1;
bool dupPoint2 = false;
// Search for opposite face and pivot point
for (int facei = 0; facei < 5; ++facei)
{
if (facei == baseFaceId)
{
continue;
}
const vtkTypeInt64 cellFacei = cellFaces[facei];
if (meshFaces.GetSize(cellFacei) == 3)
{
cellOppositeFaceI = cellFacei;
}
else if (pivotMeshPoint == -1)
{
// Find the pivot point if still unknown
const bool isOwner =
(cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
bool found0Dup = false;
int pointI = 0;
for (; pointI < 4; ++pointI) // each face point
{
// matching two points in base face is enough to find a
// duplicated point since neighboring faces share two
// neighboring points (i. e. an edge)
if (baseFacePoint0 == facePoints[pointI])
{
found0Dup = true;
break;
}
else if (baseFacePoint2 == facePoints[pointI])
{
break;
}
}
// the matching point must always be found so omit the check
vtkIdType baseFacePrevPoint;
vtkIdType baseFaceNextPoint;
if (found0Dup)
{
baseFacePrevPoint = cellPoints[2];
baseFaceNextPoint = cellPoints[1];
}
else
{
baseFacePrevPoint = cellPoints[1];
baseFaceNextPoint = cellPoints[0];
dupPoint2 = true;
}
const vtkTypeInt64 faceNextPoint = facePoints[(pointI + 1) % 4];
const vtkTypeInt64 facePrevPoint = facePoints[(3 + pointI) % 4];
// if the next point of the faceI-th face matches the
// previous point of the base face use the previous point of
// the faceI-th face as the pivot point; or use the next
// point otherwise
if (faceNextPoint == (isOwner ? baseFacePrevPoint : baseFaceNextPoint))
{
pivotMeshPoint = facePrevPoint;
}
else
{
pivotMeshPoint = faceNextPoint;
}
}
// break when both of opposite face and pivot point are found
if (cellOppositeFaceI >= 0 && pivotMeshPoint >= 0)
{
break;
}
}
// Find the pivot point in opposite face
meshFaces.GetCell(cellOppositeFaceI, facePoints);
int pivotPointI = -1;
for (int fp = 0; fp < 3; ++fp)
{
if (pivotMeshPoint == facePoints[fp])
{
pivotPointI = fp;
break;
}
}
if (pivotPointI == -1)
{
// No pivot found - does not look like a wedge, process as polyhedron instead.
cellType = VTK_POLYHEDRON;
}
else
{
// Found a pivot - can process cell as a wedge
const bool isOwner =
(cellId == GetLabelValue(this->FaceOwner, cellOppositeFaceI, faceOwner64Bit));
if (isOwner)
{
if (dupPoint2)
{
pivotPointI = (pivotPointI + 2) % 3;
}
for (int fp = pivotPointI; fp >= 0; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
for (int fp = 2; fp > pivotPointI; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
else
{
// shift the pivot point if the point corresponds to point 2
// of the base face
if (dupPoint2)
{
pivotPointI = (1 + pivotPointI) % 3;
}
// copy the face-point list of the opposite face to cellPoints list
for (int fp = pivotPointI; fp < 3; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
for (int fp = 0; fp < pivotPointI; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
// Add WEDGE (prism) cell to the mesh
internalMesh->InsertNextCell(VTK_WEDGE, 6, cellPoints.data());
}
}
// OpenFOAM "pyr" | vtkPyramid || OpenFOAM "tet" | vtkTetrahedron
else if (cellType == VTK_PYRAMID || cellType == VTK_TETRA)
{
int nCellPoints = 0;
int baseFaceId = 0;
if (cellType == VTK_PYRAMID)
{
// Find the pyramid base
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
if (meshFaces.GetSize(cellFaces[facei]) == 4)
{
baseFaceId = static_cast<int>(facei);
break;
}
}
}
// Add base-face points to cell points - flip for owner (to point inwards)
{
const vtkTypeInt64 cellFacei = cellFaces[baseFaceId];
const bool isOwner = (cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
const size_t nFacePoints = facePoints.size();
cellPoints[nCellPoints++] = facePoints[0];
if (isOwner)
{
for (size_t fp = nFacePoints - 1; fp > 0; --fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
else
{
for (size_t fp = 1; fp < nFacePoints; ++fp)
{
cellPoints[nCellPoints++] = facePoints[fp];
}
}
}
// Take any other face to find the apex point
vtkFoamLabelListList::CellType otherFacePoints;
meshFaces.GetCell(cellFaces[(baseFaceId ? 0 : 1)], otherFacePoints);
// Find the apex point (non-common to the base)
// initialize with anything
// - if the search really fails, we have much bigger problems anyhow
vtkIdType apexMeshPointi = 0;
for (size_t otheri = 0; otheri < otherFacePoints.size(); ++otheri)
{
apexMeshPointi = otherFacePoints[otheri];
bool isUnique = true;
for (size_t fp = 0; isUnique && fp < facePoints.size(); ++fp)
{
isUnique = (apexMeshPointi != facePoints[fp]);
}
if (isUnique)
{
break;
}
}
// ... and add the apex-point
cellPoints[nCellPoints++] = apexMeshPointi;
// Add tetra or pyramid to the mesh
internalMesh->InsertNextCell(cellType, nCellPoints, cellPoints.data());
}
// Polyhedron cell (vtkPolyhedron)
if (cellType == VTK_POLYHEDRON)
{
// Preliminary checks for sizes and sanity check
size_t nPolyPoints = 0;
{
bool allEmpty = true;
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
const size_t nFacePoints = meshFaces.GetSize(cellFaces[facei]);
nPolyPoints += nFacePoints;
if (nFacePoints)
{
allEmpty = false;
}
}
if (allEmpty)
{
vtkWarningMacro("Warning: No points in cellId " << cellId);
internalMesh->InsertNextCell(VTK_EMPTY_CELL, 0, cellPoints.data());
continue;
}
}
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (additionalCells != nullptr)
{
// Decompose into tets and pyramids
// Calculate cell centroid and insert it to point list
vtkDataArray* polyCellPoints;
if (cellLabels64Bit)
{
polyCellPoints = vtkTypeInt64Array::New();
}
else
{
polyCellPoints = vtkTypeInt32Array::New();
}
this->AdditionalCellPoints->push_back(polyCellPoints);
double centroid[3];
centroid[0] = centroid[1] = centroid[2] = 0; // zero the contents
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
// Eliminate duplicate points from faces
const vtkTypeInt64 cellFacei = cellFaces[facei];
meshFaces.GetCell(cellFacei, facePoints);
for (size_t fp = 0; fp < facePoints.size(); ++fp)
{
const vtkTypeInt64 meshPointi = facePoints[fp];
bool isUnique = true;
for (vtkIdType cp = 0; isUnique && cp < polyCellPoints->GetDataSize(); ++cp)
{
isUnique = (meshPointi != GetLabelValue(polyCellPoints, cp, cellLabels64Bit));
}
if (isUnique)
{
AppendLabelValue(polyCellPoints, meshPointi, cellLabels64Bit);
const float* tuple = pointArray->GetPointer(3 * meshPointi);
centroid[0] += static_cast<double>(tuple[0]);
centroid[1] += static_cast<double>(tuple[1]);
centroid[2] += static_cast<double>(tuple[2]);
}
}
}
polyCellPoints->Squeeze();
{
const double weight = 1.0 / static_cast<double>(polyCellPoints->GetDataSize());
centroid[0] *= weight;
centroid[1] *= weight;
centroid[2] *= weight;
}
pointArray->InsertNextTuple(centroid);
// polyhedron decomposition.
// a tweaked algorithm based on OpenFOAM
// src/fileFormats/vtk/part/foamVtuSizingTemplates.C
// TODO: improve consistency of face point ordering.
// - currently just flips the faces without preserving the face point 0 order.
bool firstCell = true;
int nAdditionalCells = 0;
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
const vtkTypeInt64 cellFacei = cellFaces[facei];
const bool isOwner =
(cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
const size_t nFacePoints = facePoints.size();
const int flipNeighbor = (isOwner ? -1 : 1);
const size_t nTris = (nFacePoints % 2);
size_t vertI = 2;
// shift the start and end of the vertex loop if the
// triangle of a decomposed face is going to be flat. Far
// from perfect but better than nothing to avoid flat cells
// which stops time integration of Stream Tracer especially
// for split-hex unstructured meshes created by
// e. g. autoRefineMesh
if (nFacePoints >= 5 && nTris)
{
const float* point0 = pointArray->GetPointer(3 * facePoints[nFacePoints - 1]);
const float* point1 = pointArray->GetPointer(3 * facePoints[0]);
const float* point2 = pointArray->GetPointer(3 * facePoints[nFacePoints - 2]);
float vsizeSqr1 = 0.0F, vsizeSqr2 = 0.0F, dotProduct = 0.0F;
for (int i = 0; i < 3; i++)
{
const float v1 = point1[i] - point0[i];
const float v2 = point2[i] - point0[i];
vsizeSqr1 += v1 * v1;
vsizeSqr2 += v2 * v2;
dotProduct += v1 * v2;
}
// compare in squared representation to avoid using sqrt()
if (dotProduct * (float)fabs(dotProduct) / (vsizeSqr1 * vsizeSqr2) < -1.0F + 1.0e-3F)
{
vertI = 1;
}
}
cellPoints[0] = facePoints[(vertI == 2) ? static_cast<vtkIdType>(0)
: static_cast<vtkIdType>(nFacePoints - 1)];
cellPoints[4] = static_cast<vtkIdType>(this->NumPoints + nAdditionalPoints); // apex
// Decompose a face into quads in order (flipping decomposed face if owner)
const size_t nQuadVerts = nFacePoints - 1 - nTris;
for (; vertI < nQuadVerts; vertI += 2)
{
cellPoints[1] = facePoints[vertI - flipNeighbor];
cellPoints[2] = facePoints[vertI];
cellPoints[3] = facePoints[vertI + flipNeighbor];
// Insert first decomposed cell into the original position,
// subsequent ones are appended to the decomposed cell list
if (firstCell)
{
firstCell = false;
internalMesh->InsertNextCell(VTK_PYRAMID, 5, cellPoints.data());
}
else
{
++nAdditionalCells;
additionalCells->InsertNextTypedTuple(cellPoints.data());
}
}
// if the number of vertices is odd there's a triangle
if (nTris)
{
if (flipNeighbor == -1) // isOwner
{
cellPoints[1] = facePoints[vertI];
cellPoints[2] = facePoints[vertI - 1];
}
else
{
cellPoints[1] = facePoints[vertI - 1];
cellPoints[2] = facePoints[vertI];
}
cellPoints[3] = static_cast<vtkIdType>(this->NumPoints + nAdditionalPoints);
// Insert first decomposed cell into the original position,
// subsequent ones are appended to the decomposed cell list
if (firstCell)
{
firstCell = false;
internalMesh->InsertNextCell(VTK_TETRA, 4, cellPoints.data());
}
else
{
// set the 5th vertex number to -1 to distinguish a tetra cell
cellPoints[4] = -1;
++nAdditionalCells;
additionalCells->InsertNextTypedTuple(cellPoints.data());
}
}
}
++nAdditionalPoints;
this->AdditionalCellIds->InsertNextValue(cellId);
this->NumAdditionalCells->InsertNextValue(nAdditionalCells);
this->NumTotalAdditionalCells += nAdditionalCells;
}
else
#endif // VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
{
// Not decomposed - using VTK_POLYHEDRON
// Precalculated 'nPolyPoints' has all face points, including duplicates
// - need nPolyPoints + nPolyFaces for the face loops
// - use nPolyPoints to estimate unique cell points
// (assume a point connects at least three faces)
cellPoints.copy_resize(0);
polyPoints.copy_resize(0);
cellPoints.copy_reserve(nPolyPoints / 3);
polyPoints.copy_reserve(nPolyPoints + cellFaces.size());
size_t nCellPoints = 0;
nPolyPoints = 0; // Reset
for (size_t facei = 0; facei < cellFaces.size(); ++facei)
{
const vtkTypeInt64 cellFacei = cellFaces[facei];
const bool isOwner =
(cellId == GetLabelValue(this->FaceOwner, cellFacei, faceOwner64Bit));
meshFaces.GetCell(cellFacei, facePoints);
const size_t nFacePoints = facePoints.size();
size_t nUnique = 0;
// Pass 1: add face points, and mark up duplicates on the way
polyPoints.copy_resize(nPolyPoints + nFacePoints + 1);
polyPoints[nPolyPoints++] = static_cast<vtkIdType>(nFacePoints);
if (!nFacePoints)
{
continue;
}
// Add face point 0
{
const auto meshPointi = static_cast<vtkIdType>(facePoints[0]);
polyPoints[nPolyPoints++] = meshPointi;
bool isUnique = true;
for (size_t cp = 0; isUnique && cp < nCellPoints; ++cp)
{
isUnique = (meshPointi != cellPoints[cp]);
}
if (isUnique)
{
++nUnique;
}
else
{
facePoints[0] = -1; // Duplicate
}
}
// Add other face points
{
// Local face point indexing - must be signed
const int faceDirn = (isOwner ? 1 : -1); // Flip direction for neighbour face
int facePointi = (isOwner ? 1 : static_cast<int>(nFacePoints) - 1);
for (size_t fp = 1; fp < nFacePoints; ++fp, facePointi += faceDirn)
{
const auto meshPointi = static_cast<vtkIdType>(facePoints[facePointi]);
polyPoints[nPolyPoints++] = meshPointi;
bool isUnique = true;
for (size_t cp = 0; isUnique && cp < nCellPoints; ++cp)
{
isUnique = (meshPointi != cellPoints[cp]);
}
if (isUnique)
{
++nUnique;
}
else
{
facePoints[facePointi] = -1; // Duplicate
}
}
}
cellPoints.copy_resize(nCellPoints + nUnique);
// Pass 2: add unique cell points - order is arbitrary
for (size_t fp = 0; fp < nFacePoints; ++fp)
{
const auto meshPointi = static_cast<vtkIdType>(facePoints[fp]);
if (meshPointi != -1) // isUnique
{
cellPoints[nCellPoints++] = meshPointi;
}
}
}
// Create the poly cell and insert it into the mesh
internalMesh->InsertNextCell(VTK_POLYHEDRON, static_cast<vtkIdType>(nCellPoints),
cellPoints.data(), static_cast<vtkIdType>(cellFaces.size()), polyPoints.data());
}
}
}
}
//------------------------------------------------------------------------------
// derive cell types and create the internal mesh
vtkUnstructuredGrid* vtkOpenFOAMReaderPrivate::MakeInternalMesh(
std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr, const vtkFoamLabelListList& meshFaces,
vtkFloatArray* pointArray)
{
// Create Mesh
auto* internalMesh = vtkUnstructuredGrid::New();
internalMesh->Allocate(this->NumCells);
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->Parent->GetDecomposePolyhedra())
{
// For polyhedral decomposition
this->NumTotalAdditionalCells = 0;
this->AdditionalCellIds = vtkIdTypeArray::New();
this->NumAdditionalCells = vtkIntArray::New();
this->AdditionalCellPoints = new vtkFoamLabelArrayVector;
vtkNew<vtkIdTypeArray> additionalCells;
additionalCells->SetNumberOfComponents(5); // Accommodate tetra or pyramid
this->InsertCellsToGrid(
internalMesh, meshCellsPtr, meshFaces, nullptr, additionalCells, pointArray);
// For polyhedral decomposition
pointArray->Squeeze();
this->AdditionalCellIds->Squeeze();
this->NumAdditionalCells->Squeeze();
additionalCells->Squeeze();
// Insert decomposed cells into mesh
const int nComponents = additionalCells->GetNumberOfComponents(); // Should still be 5
const vtkIdType nAdditionalCells = additionalCells->GetNumberOfTuples();
for (vtkIdType i = 0; i < nAdditionalCells; i++)
{
if (additionalCells->GetComponent(i, 4) == -1)
{
internalMesh->InsertNextCell(VTK_TETRA, 4, additionalCells->GetPointer(i * nComponents));
}
else
{
internalMesh->InsertNextCell(VTK_PYRAMID, 5, additionalCells->GetPointer(i * nComponents));
}
}
internalMesh->Squeeze();
}
else
#endif // VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
{
this->InsertCellsToGrid(internalMesh, meshCellsPtr, meshFaces);
}
// Set points for internalMesh
vtkNew<vtkPoints> points;
points->SetData(pointArray);
internalMesh->SetPoints(points);
return internalMesh;
}
//------------------------------------------------------------------------------
// Insert faces to grid
void vtkOpenFOAMReaderPrivate::InsertFacesToGrid(vtkPolyData* boundaryMesh,
const vtkFoamLabelListList& meshFaces, vtkIdType startFace, vtkIdType endFace,
vtkIdList* faceLabels, vtkDataArray* pointMap, bool isLookupValue)
{
vtkPolyData& bm = *boundaryMesh;
// Limits
const vtkIdType maxLabels = this->FaceOwner->GetNumberOfTuples(); // NumFaces
// A per-face scratch array for vtkIdType ids.
vtkFoamStackVector<vtkIdType, 64> facePointIds;
for (vtkIdType facei = startFace; facei < endFace; ++facei)
{
vtkIdType faceId = facei;
if (faceLabels != nullptr)
{
faceId = faceLabels->GetId(facei);
if (faceId < 0 || faceId >= maxLabels)
{
// sanity check. bad values should have been removed before this
vtkWarningMacro(<< "faceLabels id " << faceId << " exceeds number of faces " << maxLabels);
continue;
}
}
const int nFacePoints = static_cast<int>(meshFaces.GetSize(faceId));
facePointIds.fast_resize(nFacePoints);
if (isLookupValue)
{
for (int fp = 0; fp < nFacePoints; ++fp)
{
const auto meshPointi = static_cast<vtkIdType>(meshFaces.GetValue(faceId, fp));
facePointIds[fp] = pointMap->LookupValue(meshPointi);
}
}
else if (pointMap)
{
const bool pointMap64Bit = ::Is64BitArray(pointMap); // null-safe
for (int fp = 0; fp < nFacePoints; ++fp)
{
const auto meshPointi = static_cast<vtkIdType>(meshFaces.GetValue(faceId, fp));
facePointIds[fp] = GetLabelValue(pointMap, meshPointi, pointMap64Bit);
}
}
else
{
for (int fp = 0; fp < nFacePoints; ++fp)
{
const auto meshPointi = static_cast<vtkIdType>(meshFaces.GetValue(faceId, fp));
facePointIds[fp] = meshPointi;
}
}
const int vtkFaceType =
(nFacePoints == 3 ? VTK_TRIANGLE : nFacePoints == 4 ? VTK_QUAD : VTK_POLYGON);
bm.InsertNextCell(vtkFaceType, nFacePoints, facePointIds.data());
}
}
//------------------------------------------------------------------------------
// Returns requested boundary meshes
vtkMultiBlockDataSet* vtkOpenFOAMReaderPrivate::MakeBoundaryMesh(
const vtkFoamLabelListList& meshFaces, vtkFloatArray* pointArray)
{
const auto& patches = this->BoundaryDict;
const vtkIdType nBoundaries = static_cast<vtkIdType>(patches.size());
// Final consistency check for boundaries
if (patches.endFace() > meshFaces.GetNumberOfElements())
{
vtkErrorMacro(<< "The boundary describes " << patches.startFace() << " to "
<< (patches.endFace() - 1) << " faces, but mesh only has "
<< meshFaces.GetNumberOfElements() << " faces");
return nullptr;
}
auto* boundaryMesh = vtkMultiBlockDataSet::New();
if (this->Parent->GetCreateCellToPoint())
{
this->AllBoundaries = vtkPolyData::New();
this->AllBoundaries->AllocateEstimate(
// ==> nBoundaryFaces
meshFaces.GetNumberOfElements() - patches.startFace(), 1);
}
this->BoundaryPointMap = new vtkFoamLabelArrayVector;
// Use same integer width as per faces
const bool meshPoints64Bit = meshFaces.IsLabel64();
// create initial internal point list: set all points to -1
if (this->Parent->GetCreateCellToPoint())
{
if (meshPoints64Bit)
{
this->InternalPoints = vtkTypeInt64Array::New();
}
else
{
this->InternalPoints = vtkTypeInt32Array::New();
}
this->InternalPoints->SetNumberOfValues(this->NumPoints);
this->InternalPoints->FillComponent(0, -1);
// Mark boundary points as 0
for (const vtkFoamPatch& patch : patches)
{
if (patch.type_ == vtkFoamPatch::PHYSICAL || patch.type_ == vtkFoamPatch::PROCESSOR)
{
const vtkIdType startFace = patch.startFace();
const vtkIdType endFace = patch.endFace();
for (vtkIdType facei = startFace; facei < endFace; ++facei)
{
const vtkIdType nFacePoints = meshFaces.GetSize(facei);
for (vtkIdType pointi = 0; pointi < nFacePoints; ++pointi)
{
SetLabelValue(
this->InternalPoints, meshFaces.GetValue(facei, pointi), 0, meshPoints64Bit);
}
}
}
}
}
vtkTypeInt64 nAllBoundaryPoints = 0;
std::vector<std::vector<vtkIdType>> procCellList;
vtkSmartPointer<vtkTypeInt8Array> pointTypes;
if (this->Parent->GetCreateCellToPoint())
{
// Create global to AllBoundaries point map
for (vtkIdType pointi = 0; pointi < this->NumPoints; ++pointi)
{
if (GetLabelValue(this->InternalPoints, pointi, meshPoints64Bit) == 0)
{
SetLabelValue(this->InternalPoints, pointi, nAllBoundaryPoints, meshPoints64Bit);
nAllBoundaryPoints++;
}
}
if (!this->ProcessorName.empty())
{
// Initialize physical-processor boundary shared point list
procCellList.resize(static_cast<size_t>(nAllBoundaryPoints));
pointTypes = vtkSmartPointer<vtkTypeInt8Array>::New();
pointTypes->SetNumberOfTuples(nAllBoundaryPoints);
pointTypes->FillValue(0);
}
}
for (vtkIdType patchi = 0; patchi < nBoundaries; ++patchi)
{
const vtkFoamPatch& patch = patches[patchi];
const vtkIdType startFace = patch.startFace();
const vtkIdType endFace = patch.endFace();
const vtkIdType nFaces = patch.size_;
if (this->Parent->GetCreateCellToPoint() &&
(patch.type_ == vtkFoamPatch::PHYSICAL || patch.type_ == vtkFoamPatch::PROCESSOR))
{
// Add faces to AllBoundaries
this->InsertFacesToGrid(
this->AllBoundaries, meshFaces, startFace, endFace, nullptr, this->InternalPoints, false);
if (!this->ProcessorName.empty())
{
// Mark belonging boundary types and, if PROCESSOR, cell numbers
const vtkIdType absStartFace = patch.offset_;
const vtkIdType absEndFace = absStartFace + nFaces;
for (vtkIdType facei = absStartFace; facei < absEndFace; ++facei)
{
vtkIdType nPoints;
const vtkIdType* points;
this->AllBoundaries->GetCellPoints(facei, nPoints, points);
if (patch.type_ == vtkFoamPatch::PHYSICAL)
{
for (vtkIdType pointi = 0; pointi < nPoints; ++pointi)
{
*pointTypes->GetPointer(points[pointi]) |= vtkFoamPatch::PHYSICAL;
}
}
else
{
// PROCESSOR
for (vtkIdType pointi = 0; pointi < nPoints; ++pointi)
{
const vtkIdType procPoint = points[pointi];
*pointTypes->GetPointer(procPoint) |= vtkFoamPatch::PROCESSOR;
procCellList[procPoint].push_back(facei);
}
}
}
}
}
// Skip below if not active
if (!patches.isActive(patch.index_))
{
continue;
}
// Create the boundary patch mesh
vtkNew<vtkPolyData> bm;
::AppendBlock(boundaryMesh, bm, patch.name_);
bm->AllocateEstimate(nFaces, 1);
// Local to global point index mapping
vtkDataArray* bpMap;
if (meshPoints64Bit)
{
bpMap = vtkTypeInt64Array::New();
}
else
{
bpMap = vtkTypeInt32Array::New();
}
this->BoundaryPointMap->push_back(bpMap);
// The point locations for the boundary
vtkNew<vtkFloatArray> boundaryPointArray;
boundaryPointArray->SetNumberOfComponents(3);
// In OpenFOAM-1.5 and earlier, meshPoints were in increasing order
// but this gave problems in processor point synchronisation.
// - now uses the order in which faces are visited
// Visit order
// - normally with unordered_map to create a global to local map.
// However, we later use LookupValue() method on a regular list,
// so unordered_set is sufficient
{
// A global to local map for marking points
std::unordered_set<vtkTypeInt64> markedPoints;
vtkFoamLabelListList::CellType face;
for (vtkIdType facei = startFace; facei < endFace; ++facei)
{
meshFaces.GetCell(facei, face);
for (const auto meshPointi : face)
{
auto insertion = markedPoints.emplace(meshPointi);
if (insertion.second)
{
// A previously unvisited point
boundaryPointArray->InsertNextTuple(pointArray->GetPointer(3 * meshPointi));
AppendLabelValue(bpMap, meshPointi, meshPoints64Bit);
}
}
}
}
bpMap->Squeeze();
boundaryPointArray->Squeeze();
vtkNew<vtkPoints> boundaryPoints;
boundaryPoints->SetData(boundaryPointArray);
// Set points for boundary
bm->SetPoints(boundaryPoints);
// Insert faces to boundary mesh
this->InsertFacesToGrid(bm, meshFaces, startFace, endFace, nullptr, bpMap, true);
bpMap->ClearLookup();
}
if (this->Parent->GetCreateCellToPoint())
{
this->AllBoundaries->Squeeze();
if (meshPoints64Bit)
{
this->AllBoundariesPointMap = vtkTypeInt64Array::New();
}
else
{
this->AllBoundariesPointMap = vtkTypeInt32Array::New();
}
vtkDataArray& abpMap = *this->AllBoundariesPointMap;
abpMap.SetNumberOfValues(nAllBoundaryPoints);
// create lists of internal points and AllBoundaries points
vtkIdType nInternalPoints = 0;
for (vtkIdType pointI = 0, allBoundaryPointI = 0; pointI < this->NumPoints; pointI++)
{
vtkIdType globalPointId = GetLabelValue(this->InternalPoints, pointI, meshPoints64Bit);
if (globalPointId == -1)
{
SetLabelValue(this->InternalPoints, nInternalPoints, pointI, meshPoints64Bit);
nInternalPoints++;
}
else
{
SetLabelValue(&abpMap, allBoundaryPointI, pointI, meshPoints64Bit);
allBoundaryPointI++;
}
}
// shrink to the number of internal points
if (nInternalPoints > 0)
{
this->InternalPoints->Resize(nInternalPoints);
}
else
{
this->InternalPoints->Delete();
this->InternalPoints = nullptr;
}
// set dummy vtkPoints to tell the grid the number of points
// (otherwise GetPointCells will crash)
vtkNew<vtkPoints> allBoundaryPoints;
allBoundaryPoints->SetNumberOfPoints(abpMap.GetNumberOfTuples());
this->AllBoundaries->SetPoints(allBoundaryPoints);
if (!this->ProcessorName.empty())
{
// remove links to processor boundary faces from point-to-cell
// links of physical-processor shared points to avoid cracky seams
// on fixedValue-type boundaries which are noticeable when all the
// decomposed meshes are appended
this->AllBoundaries->BuildLinks();
for (int pointI = 0; pointI < nAllBoundaryPoints; pointI++)
{
if (pointTypes->GetValue(pointI) == (vtkFoamPatch::PHYSICAL | vtkFoamPatch::PROCESSOR))
{
const std::vector<vtkIdType>& procCells = procCellList[pointI];
for (size_t cellI = 0; cellI < procCellList[pointI].size(); cellI++)
{
this->AllBoundaries->RemoveReferenceToCell(pointI, procCells[cellI]);
}
// omit reclaiming memory as the possibly recovered size should
// not typically be so large
}
}
}
}
return boundaryMesh;
}
//------------------------------------------------------------------------------
// Move mesh points, including the cell centroids for any decomposed polyhedra
bool vtkOpenFOAMReaderPrivate::MoveInternalMesh(
vtkUnstructuredGrid* internalMesh, vtkFloatArray* pointArray)
{
const auto nOldPoints = internalMesh->GetPoints()->GetNumberOfPoints();
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->Parent->GetDecomposePolyhedra() && this->AdditionalCellPoints &&
!this->AdditionalCellPoints->empty())
{
const auto& addCellPoints = *this->AdditionalCellPoints;
const vtkIdType nAddPoints = static_cast<vtkIdType>(addCellPoints.size());
pointArray->Resize(this->NumPoints + nAddPoints);
const bool cellPoints64Bit = ::Is64BitArray(this->AdditionalCellPoints->front());
double centroid[3];
for (vtkIdType i = 0, newPointi = this->NumPoints; i < nAddPoints; ++i, ++newPointi)
{
vtkDataArray* polyCellPoints = addCellPoints[i];
const vtkIdType nCellPoints = polyCellPoints->GetDataSize();
centroid[0] = centroid[1] = centroid[2] = 0; // zero contents
for (vtkIdType j = 0; j < nCellPoints; j++)
{
const vtkTypeInt64 polyCellPointi = GetLabelValue(polyCellPoints, j, cellPoints64Bit);
const float* tuple = pointArray->GetPointer(3 * polyCellPointi);
centroid[0] += static_cast<double>(tuple[0]);
centroid[1] += static_cast<double>(tuple[1]);
centroid[2] += static_cast<double>(tuple[2]);
}
if (nCellPoints)
{
const double weight = 1.0 / static_cast<double>(nCellPoints);
centroid[0] *= weight;
centroid[1] *= weight;
centroid[2] *= weight;
}
pointArray->InsertTuple(newPointi, centroid);
}
}
#endif // VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (nOldPoints != pointArray->GetNumberOfTuples())
{
vtkErrorMacro(<< "Mismatch in number of old points (" << nOldPoints << ") and new points ("
<< pointArray->GetNumberOfTuples() << ')');
return false;
}
// Update the mesh points. No Delete on pointArray (still used outside)
vtkNew<vtkPoints> points;
points->SetData(pointArray);
internalMesh->SetPoints(points);
return true;
}
//------------------------------------------------------------------------------
// Move boundary points
bool vtkOpenFOAMReaderPrivate::MoveBoundaryMesh(
vtkMultiBlockDataSet* boundaryMesh, vtkFloatArray* pointArray)
{
const auto& patches = this->BoundaryDict;
unsigned int activeBoundaryIndex = 0;
for (const vtkFoamPatch& patch : patches)
{
if (patches.isActive(patch.index_))
{
auto* bm = vtkPolyData::SafeDownCast(boundaryMesh->GetBlock(activeBoundaryIndex));
vtkDataArray* bpMap = this->BoundaryPointMap->operator[](activeBoundaryIndex);
++activeBoundaryIndex;
const vtkIdType nBoundaryPoints = bpMap->GetNumberOfTuples();
const bool meshPoints64Bit = ::Is64BitArray(bpMap);
vtkNew<vtkFloatArray> boundaryPointArray;
boundaryPointArray->SetNumberOfComponents(3);
boundaryPointArray->SetNumberOfTuples(nBoundaryPoints);
for (vtkIdType pointi = 0; pointi < nBoundaryPoints; ++pointi)
{
const auto meshPointi = GetLabelValue(bpMap, pointi, meshPoints64Bit);
boundaryPointArray->SetTuple(pointi, meshPointi, pointArray);
}
vtkNew<vtkPoints> boundaryPoints;
boundaryPoints->SetData(boundaryPointArray);
bm->SetPoints(boundaryPoints);
}
}
return true;
}
//------------------------------------------------------------------------------
// as of now the function does not do interpolation, but do just averaging.
void vtkOpenFOAMReaderPrivate::InterpolateCellToPoint(vtkFloatArray* pData, vtkFloatArray* iData,
vtkPointSet* mesh, vtkDataArray* pointList, vtkTypeInt64 nPoints)
{
if (nPoints == 0)
{
return;
}
const bool meshPoints64Bit = ::Is64BitArray(pointList);
// a dummy call to let GetPointCells() build the cell links if still not built
// (not using BuildLinks() since it always rebuild links)
mesh->GetPointCells(0, vtkNew<vtkIdList>());
// Set up to grab point cells
auto* ug = vtkUnstructuredGrid::SafeDownCast(mesh);
auto* pd = vtkPolyData::SafeDownCast(mesh);
vtkIdType nCells;
vtkIdType* cells;
const int nComponents = iData->GetNumberOfComponents();
if (nComponents == 1)
{
// a special case with the innermost componentI loop unrolled
float* tuples = iData->GetPointer(0);
for (vtkTypeInt64 pointI = 0; pointI < nPoints; pointI++)
{
vtkTypeInt64 pI = pointList ? GetLabelValue(pointList, pointI, meshPoints64Bit) : pointI;
if (ug)
{
ug->GetPointCells(pI, nCells, cells);
}
else
{
pd->GetPointCells(pI, nCells, cells);
}
// use double intermediate variable for precision
double interpolatedValue = 0.0;
for (int cellI = 0; cellI < nCells; cellI++)
{
interpolatedValue += tuples[cells[cellI]];
}
interpolatedValue = (nCells ? interpolatedValue / static_cast<double>(nCells) : 0.0);
pData->SetValue(pI, static_cast<float>(interpolatedValue));
}
}
else if (nComponents == 3)
{
// a special case with the innermost componentI loop unrolled
float* pDataPtr = pData->GetPointer(0);
for (vtkTypeInt64 pointI = 0; pointI < nPoints; pointI++)
{
vtkTypeInt64 pI = pointList ? GetLabelValue(pointList, pointI, meshPoints64Bit) : pointI;
if (ug)
{
ug->GetPointCells(pI, nCells, cells);
}
else
{
pd->GetPointCells(pI, nCells, cells);
}
// use double intermediate variables for precision
const double weight = (nCells ? 1.0 / static_cast<double>(nCells) : 0.0);
double summedValue0 = 0.0, summedValue1 = 0.0, summedValue2 = 0.0;
// hand unrolling
for (int cellI = 0; cellI < nCells; cellI++)
{
const float* tuple = iData->GetPointer(3 * cells[cellI]);
summedValue0 += tuple[0];
summedValue1 += tuple[1];
summedValue2 += tuple[2];
}
float* interpolatedValue = &pDataPtr[3 * pI];
interpolatedValue[0] = static_cast<float>(weight * summedValue0);
interpolatedValue[1] = static_cast<float>(weight * summedValue1);
interpolatedValue[2] = static_cast<float>(weight * summedValue2);
}
}
else
{
float* pDataPtr = pData->GetPointer(0);
for (vtkTypeInt64 pointI = 0; pointI < nPoints; pointI++)
{
vtkTypeInt64 pI = pointList ? GetLabelValue(pointList, pointI, meshPoints64Bit) : pointI;
if (ug)
{
ug->GetPointCells(pI, nCells, cells);
}
else
{
pd->GetPointCells(pI, nCells, cells);
}
// use double intermediate variables for precision
const double weight = (nCells ? 1.0 / static_cast<double>(nCells) : 0.0);
float* interpolatedValue = &pDataPtr[nComponents * pI];
// a bit strange loop order but this works fastest
for (int componentI = 0; componentI < nComponents; componentI++)
{
const float* tuple = iData->GetPointer(componentI);
double summedValue = 0.0;
for (int cellI = 0; cellI < nCells; cellI++)
{
summedValue += tuple[nComponents * cells[cellI]];
}
interpolatedValue[componentI] = static_cast<float>(weight * summedValue);
}
}
}
}
//------------------------------------------------------------------------------
bool vtkOpenFOAMReaderPrivate::ReadFieldFile(vtkFoamIOobject& io, vtkFoamDict& dict,
const std::string& varName, const vtkDataArraySelection* selection)
{
const std::string varPath(this->CurrentTimeRegionPath() + "/" + varName);
// Open the file
if (!io.Open(varPath))
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError());
return false;
}
// if the variable is disabled on selection panel then skip it
if (selection->ArrayExists(io.GetObjectName().c_str()) &&
!selection->ArrayIsEnabled(io.GetObjectName().c_str()))
{
return false;
}
// Read the field file into dictionary
if (!dict.Read(io))
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << io.GetError());
return false;
}
if (dict.GetType() != vtkFoamToken::DICTIONARY)
{
vtkErrorMacro(<< "File " << io.GetFileName() << "is not valid as a field file");
return false;
}
return true;
}
//------------------------------------------------------------------------------
vtkSmartPointer<vtkFloatArray> vtkOpenFOAMReaderPrivate::FillField(vtkFoamEntry& entry,
vtkIdType nElements, const vtkFoamIOobject& io, vtkFoamTypes::dataType fieldDataType)
{
const std::string& className = io.GetClassName();
vtkSmartPointer<vtkFloatArray> data;
if (entry.FirstValue().IsUniform())
{
if (entry.FirstValue().IsNumeric())
{
const float num = entry.ToFloat();
data = vtkSmartPointer<vtkFloatArray>::New();
data->SetNumberOfValues(nElements);
data->FillValue(num);
}
else
{
float tupleBuffer[9], *tuple;
int nComponents = -1;
// have to determine the type of vector
if (entry.FirstValue().GetType() == vtkFoamToken::LABELLIST)
{
vtkDataArray& ll = entry.LabelList();
nComponents = static_cast<int>(ll.GetNumberOfTuples());
for (int componentI = 0; componentI < nComponents; componentI++)
{
tupleBuffer[componentI] = static_cast<float>(ll.GetTuple1(componentI));
}
tuple = tupleBuffer;
}
else if (entry.FirstValue().GetType() == vtkFoamToken::SCALARLIST)
{
vtkFloatArray& sl = entry.ScalarList();
nComponents = static_cast<int>(sl.GetSize());
tuple = sl.GetPointer(0);
}
else
{
vtkErrorMacro(<< "Wrong list type for uniform field: " << io.GetObjectName());
return nullptr;
}
if ((vtkFoamTypes::GetNumberOfComponents(fieldDataType) == nComponents) &&
vtkFoamTypes::IsVectorSpace(fieldDataType))
{
data = vtkSmartPointer<vtkFloatArray>::New();
data->SetNumberOfComponents(nComponents);
data->SetNumberOfTuples(nElements);
for (vtkIdType i = 0; i < nElements; i++)
{
data->SetTuple(i, tuple);
}
}
else
{
vtkErrorMacro(<< "Number of components and field class do not match "
<< "for " << io.GetFileName() << ". class = " << className
<< ", nComponents = " << nComponents);
return nullptr;
}
}
}
else // nonuniform
{
if ((entry.FirstValue().GetType() == vtkFoamToken::SCALARLIST &&
vtkFoamTypes::IsScalar(fieldDataType)) ||
(entry.FirstValue().GetType() == vtkFoamToken::VECTORLIST &&
vtkFoamTypes::IsVectorSpace(fieldDataType)))
{
const vtkIdType nTuples = entry.ScalarList().GetNumberOfTuples();
if (nTuples != nElements)
{
vtkErrorMacro(<< "Number of cells/points in mesh and field do not match: "
<< "mesh = " << nElements << ", field = " << nTuples << " in "
<< io.GetObjectName());
return nullptr;
}
// Capture content as smart pointer
data.TakeReference(entry.ReleasePtr<vtkFloatArray>());
}
else if (entry.FirstValue().GetType() == vtkFoamToken::EMPTYLIST && nElements <= 0)
{
data = vtkSmartPointer<vtkFloatArray>::New();
// Set appropriate number of components for empty list as well
const int nComp = vtkFoamTypes::GetNumberOfComponents(fieldDataType);
if (nComp > 0)
{
data->SetNumberOfComponents(nComp);
}
}
else
{
vtkErrorMacro(<< io.GetFileName() << " is not a valid " << io.GetClassName());
return nullptr;
}
}
return data;
}
//------------------------------------------------------------------------------
// Convert OpenFOAM dimension array to string representation
std::string vtkOpenFOAMReaderPrivate::ConstructDimensions(const vtkFoamDict& dict) const
{
const int nDimensions = 7; // There are 7 base dimensions
static const char* units[7] = { "kg", "m", "s", "K", "mol", "A", "cd" };
if (!this->Parent->GetAddDimensionsToArrayNames())
{
return std::string();
}
const vtkFoamEntry* dimEntry = dict.Lookup("dimensions");
if ((dimEntry == nullptr) || (dimEntry->FirstValue().GetType() != vtkFoamToken::SCALARLIST))
{
return std::string();
}
const vtkFloatArray& values = dimEntry->ScalarList();
const vtkIdType nValues = values.GetNumberOfTuples();
// Expect seven dimensions, but may have only the first five.
// OpenFOAM accepts both and so do we.
if (nValues != 5 && nValues != nDimensions)
{
return std::string();
}
// Make a copy
float dims[7] = { 0 };
for (vtkIdType i = 0; i < nValues; ++i)
{
dims[i] = values.GetValue(i);
}
const auto equal = // Compare floats with rounding
[](const float a, const float b) { return (std::abs(a - b) < 1e-3); };
const auto integral = // Test if integral/non-integral
[](const float val) { return (std::abs(val - std::round(val)) < 1e-4); };
// Stringify. Use stringstream to build the string
std::ostringstream dimensions, denominator;
dimensions << " [";
int nPositive = 0;
int nNegative = 0;
// Some standard units
if (equal(dims[0], 1) && equal(dims[1], -1) && equal(dims[2], -2))
{
dimensions << "Pa";
nPositive = 1;
dims[0] = dims[1] = dims[2] = 0;
}
else if (equal(dims[0], 1) && equal(dims[1], 1) && equal(dims[2], -2))
{
dimensions << "N";
nPositive = 1;
dims[0] = dims[1] = dims[2] = 0;
}
else if (equal(dims[0], 1) && equal(dims[1], 2) && equal(dims[2], -3))
{
dimensions << "W";
nPositive = 1;
dims[0] = dims[1] = dims[2] = 0;
}
// Note: cannot know if 'J' or 'N m' is the better representation, so skip that one
for (int dimi = 0; dimi < nDimensions; ++dimi)
{
float expon = dims[dimi];
if (expon > 0)
{
if (nPositive++)
{
dimensions << ' ';
}
dimensions << units[dimi];
if (equal(expon, 1))
{
continue;
}
if (!integral(expon))
{
dimensions << '^';
}
dimensions << expon;
}
else if (expon < 0)
{
expon = -expon;
if (nNegative++)
{
denominator << ' ';
}
denominator << units[dimi];
if (equal(expon, 1))
{
continue;
}
if (!integral(expon))
{
denominator << '^';
}
denominator << expon;
}
}
// Finalize, adding denominator as required
if (nNegative)
{
if (nPositive == 0)
{
// No numerator
dimensions << '1';
}
dimensions << '/';
if (nNegative > 1)
{
dimensions << '(' << denominator.str() << ')';
}
else
{
dimensions << denominator.str();
}
}
else if (nPositive == 0)
{
// No dimensions
dimensions << '-';
}
dimensions << ']';
return dimensions.str();
}
//------------------------------------------------------------------------------
// Read volume or internal field at a timestep
void vtkOpenFOAMReaderPrivate::GetVolFieldAtTimeStep(
const std::string& varName, bool isInternalField)
{
// Where to map data
vtkUnstructuredGrid* internalMesh = this->InternalMesh;
vtkMultiBlockDataSet* boundaryMesh = this->BoundaryMesh;
// Boundary information
const auto& patches = this->BoundaryDict;
const bool faceOwner64Bit = ::Is64BitArray(this->FaceOwner);
vtkFoamIOobject io(this->CasePath, this->Parent);
vtkFoamDict dict;
if (!this->ReadFieldFile(io, dict, varName, this->Parent->CellDataArraySelection))
{
return;
}
// For internal field (eg, volScalarField::Internal)
const bool hasColons = (io.GetClassName().find("::Internal") != std::string::npos);
if ((io.GetClassName().compare(0, 3, "vol") != 0) ||
(hasColons ? !isInternalField : isInternalField))
{
vtkErrorMacro(<< io.GetFileName() << " is not a volume/internal field");
return;
}
// Eg, from "volScalarField" or "volScalarField::Internal" -> SCALAR_TYPE
const auto fieldDataType(vtkFoamTypes::FieldToEnum(io.GetClassName(), 3));
// -------------------------
// Handle dictionary lookups first
// The "dimensions" entry - stringify
const std::string dimString(this->ConstructDimensions(dict));
// The "internalField" entry, or "value" for Dimensioned field
vtkFoamEntry* ifieldEntry = nullptr;
{
const std::string entryName = (isInternalField ? "value" : "internalField");
ifieldEntry = dict.Lookup(entryName);
if (ifieldEntry == nullptr)
{
vtkErrorMacro(<< entryName << " not found in " << io.GetFileName());
return;
}
else if (ifieldEntry->FirstValue().GetType() == vtkFoamToken::EMPTYLIST)
{
if (this->NumCells)
{
vtkErrorMacro(<< entryName << " of " << io.GetFileName() << " is empty");
}
return;
}
}
// The "boundaryField" entry
const vtkFoamEntry* bfieldEntries = nullptr;
if (!isInternalField)
{
bfieldEntries = dict.Lookup("boundaryField");
if (bfieldEntries == nullptr)
{
vtkWarningMacro(<< "boundaryField not found in " << io.GetFileName()
<< " at time = " << this->TimeNames->GetValue(this->TimeStep));
return;
}
}
// -------------------------
// Generate internal field data
vtkSmartPointer<vtkFloatArray> iData =
this->FillField(*ifieldEntry, this->NumCells, io, fieldDataType);
if (iData == nullptr)
{
return;
}
else if (iData->GetSize() == 0)
{
// Determined that there are no cells. Ignore the field
return;
}
// Invariant for this field
const int nComponents = iData->GetNumberOfComponents();
// The cell-to-point interpolated data for cells
vtkSmartPointer<vtkFloatArray> ctpData;
// Add field only if internal Mesh exists (skip if not selected).
// Note we still need to read internalField even if internal mesh is
// not selected, since boundaries without value entries may refer to
// the internalField.
if (internalMesh != nullptr)
{
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->Parent->GetDecomposePolyhedra() && this->NumTotalAdditionalCells > 0)
{
// Add values for decomposed cells
const vtkIdType nTuples = this->AdditionalCellIds->GetNumberOfTuples();
vtkIdType newCelli = this->NumCells;
iData->Resize(this->NumCells + this->NumTotalAdditionalCells);
for (vtkIdType tupleI = 0; tupleI < nTuples; tupleI++)
{
const int nvals = this->NumAdditionalCells->GetValue(tupleI);
const vtkIdType cellId = this->AdditionalCellIds->GetValue(tupleI);
for (int vali = 0; vali < nvals; ++vali)
{
iData->InsertTuple(newCelli++, cellId, iData);
}
}
}
#endif // VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
// Set data to internal mesh
::AddArrayToFieldData(internalMesh->GetCellData(), iData, io.GetObjectName(), dimString);
if (this->Parent->GetCreateCellToPoint())
{
// Create cell-to-point interpolated data
ctpData = vtkSmartPointer<vtkFloatArray>::New();
ctpData->SetNumberOfComponents(nComponents);
ctpData->SetNumberOfTuples(internalMesh->GetPoints()->GetNumberOfPoints());
if (this->InternalPoints != nullptr)
{
this->InterpolateCellToPoint(ctpData, iData, internalMesh, this->InternalPoints,
this->InternalPoints->GetNumberOfTuples());
}
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->Parent->GetDecomposePolyhedra())
{
// assign cell values to additional points
const vtkIdType nAddPoints = this->AdditionalCellIds->GetNumberOfTuples();
for (vtkIdType pointi = 0, newPointi = this->NumPoints; pointi < nAddPoints;
++pointi, ++newPointi)
{
ctpData->SetTuple(newPointi, this->AdditionalCellIds->GetValue(pointi), iData);
}
}
#endif // VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
}
}
// Handle cell zones
if (this->Parent->CopyDataToCellZones && this->CellZoneMesh)
{
auto* zoneMesh = this->CellZoneMesh;
auto& zoneMap = this->cellZoneMap;
unsigned int nZones = zoneMesh->GetNumberOfBlocks();
if (nZones && zoneMap.empty()) // sanity check
{
vtkWarningMacro(<< "No cellLabels saved for zones");
nZones = 0;
}
for (unsigned int zonei = 0; zonei < nZones; ++zonei)
{
auto* zm = vtkUnstructuredGrid::SafeDownCast(zoneMesh->GetBlock(zonei));
const vtkIdType nZoneCells = zm->GetNumberOfCells();
vtkIdList* cellLabels = nullptr;
const std::string zoneName = zoneMesh->GetMetaData(zonei)->Get(vtkCompositeDataSet::NAME());
{
cellLabels = zoneMap.findZone(zoneName);
if (cellLabels == nullptr)
{
if (nZoneCells) // sanity check
{
vtkWarningMacro(<< "No cellLabels saved for zone: " << zoneName);
}
continue;
}
const vtkIdType nLabels = cellLabels->GetNumberOfIds();
if (nLabels != nZoneCells) // sanity check
{
vtkWarningMacro(<< "Mismatch in cellLabels (" << nLabels << ") and number of cells ("
<< nZoneCells << ") for zone: " << zoneName);
continue;
}
}
vtkNew<vtkFloatArray> zoneCellData;
zoneCellData->SetNumberOfComponents(nComponents);
zoneCellData->SetNumberOfTuples(nZoneCells);
// Copy tuples from internalField
// Like SetTuple() without the extra checks
for (vtkIdType celli = 0; celli < nZoneCells; ++celli)
{
float* dstData = zoneCellData->GetPointer(celli * nComponents);
const vtkIdType cellId = cellLabels->GetId(celli);
const float* srcData = iData->GetPointer(cellId * nComponents);
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
dstData[cmpt] = srcData[cmpt];
}
}
// Set data to zone mesh
::AddArrayToFieldData(zm->GetCellData(), zoneCellData, io.GetObjectName(), dimString);
// Point data temporarily unavailable (needs more reworking)
// // Copy points data
// zm->GetPointData()->ShallowCopy(this->InternalMesh->GetPointData());
}
}
// The cell-to-point interpolated data for boundary cells
vtkSmartPointer<vtkFloatArray> acData;
if (boundaryMesh != nullptr)
{
if (this->Parent->GetCreateCellToPoint())
{
acData = vtkSmartPointer<vtkFloatArray>::New();
acData->SetNumberOfComponents(nComponents);
acData->SetNumberOfTuples(this->AllBoundaries->GetNumberOfCells());
}
unsigned int activeBoundaryIndex = 0;
vtkFoamError warnings;
for (const vtkFoamPatch& patch : patches)
{
const vtkIdType nFaces = patch.size_;
vtkSmartPointer<vtkFloatArray> vData;
std::string bcType;
if (bfieldEntries != nullptr)
{
bool badEntry = false;
const vtkFoamEntry* bfieldEntry = bfieldEntries->Dictionary().Lookup(patch.name_, true);
if (bfieldEntry == nullptr)
{
badEntry = true;
warnings << "not found";
}
else if (bfieldEntry->FirstValue().GetType() != vtkFoamToken::DICTIONARY)
{
badEntry = true;
warnings << "not a subdictionary";
}
else
{
const vtkFoamDict& patchDict = bfieldEntry->Dictionary();
// Look for "value" entry
vtkFoamEntry* vEntry = patchDict.Lookup("value");
if (vEntry == nullptr)
{
// For alternative fallback
const vtkFoamEntry* eptr = patchDict.Lookup("type");
if (eptr != nullptr)
{
bcType = eptr->ToString();
}
}
else
{
vData = this->FillField(*vEntry, nFaces, io, fieldDataType);
if (vData == nullptr)
{
badEntry = true;
}
}
}
// If anything unexpected happened, get out
if (badEntry)
{
if (!warnings.empty())
{
vtkWarningMacro(<< "boundaryField " << patch.name_ << ' ' << warnings << " in object "
<< varName
<< " at time = " << this->TimeNames->GetValue(this->TimeStep));
}
return;
}
}
// Relative start into the FaceOwner list, which may have been truncated (boundaries only)
// or have its original length
const vtkIdType boundaryStartFace = patch.start_ -
(this->FaceOwner->GetNumberOfTuples() < this->NumFaces ? patches.startFace() : 0);
if (vData == nullptr)
{
// No "value" entry
// Default to patch-internal values as boundary values
vData = vtkSmartPointer<vtkFloatArray>::New();
vData->SetNumberOfComponents(nComponents);
vData->SetNumberOfTuples(nFaces);
// Ad hoc handling of some known bcs without a "value"
if (bcType == "noSlip")
{
vData->FillValue(0);
}
else
{
for (vtkIdType bFacei = 0; bFacei < nFaces; ++bFacei)
{
const vtkTypeInt64 own =
GetLabelValue(this->FaceOwner, bFacei + boundaryStartFace, faceOwner64Bit);
vData->SetTuple(bFacei, own, iData);
}
}
}
if (this->Parent->GetCreateCellToPoint())
{
const vtkIdType startFace = patch.offset_;
// if reading a processor sub-case of a decomposed case as is,
// use the patch values of the processor patch as is
if (patch.type_ == vtkFoamPatch::PHYSICAL ||
(this->ProcessorName.empty() && patch.type_ == vtkFoamPatch::PROCESSOR))
{
// set the same value to AllBoundaries
for (vtkIdType bFacei = 0; bFacei < nFaces; ++bFacei)
{
acData->SetTuple(bFacei + startFace, bFacei, vData);
}
}
// implies && !this->ProcessorName.empty()
else if (patch.type_ == vtkFoamPatch::PROCESSOR)
{
// average patch internal value and patch value assuming the
// patch value to be the patchInternalField of the neighbor
// decomposed mesh. Using double precision to avoid degrade in
// accuracy.
for (vtkIdType bFacei = 0; bFacei < nFaces; ++bFacei)
{
const vtkIdType own =
GetLabelValue(this->FaceOwner, bFacei + boundaryStartFace, faceOwner64Bit);
const float* vTuple = vData->GetPointer(bFacei * nComponents);
const float* iTuple = iData->GetPointer(own * nComponents);
float* acTuple = acData->GetPointer((bFacei + startFace) * nComponents);
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
acTuple[cmpt] = static_cast<float>(
0.5 * (static_cast<double>(vTuple[cmpt]) + static_cast<double>(iTuple[cmpt])));
}
}
}
}
if (patches.isActive(patch.index_))
{
auto* bm = vtkPolyData::SafeDownCast(boundaryMesh->GetBlock(activeBoundaryIndex));
++activeBoundaryIndex;
::AddArrayToFieldData(bm->GetCellData(), vData, io.GetObjectName(), dimString);
if (this->Parent->GetCreateCellToPoint())
{
// construct cell-to-point interpolated boundary values. This
// is done independently from allBoundary interpolation so
// that the interpolated values are not affected by
// neighboring patches especially at patch edges and for
// baffle patches
vtkNew<vtkFloatArray> pData;
pData->SetNumberOfComponents(vData->GetNumberOfComponents());
const vtkIdType nPoints = bm->GetPoints()->GetNumberOfPoints();
pData->SetNumberOfTuples(nPoints);
this->InterpolateCellToPoint(pData, vData, bm, nullptr, nPoints);
::AddArrayToFieldData(bm->GetPointData(), pData, io.GetObjectName(), dimString);
}
}
}
if (this->Parent->GetCreateCellToPoint())
{
// Create cell-to-point interpolated data for all boundaries and
// override internal values
vtkNew<vtkFloatArray> bpData;
bpData->SetNumberOfComponents(nComponents);
vtkIdType nPoints = this->AllBoundariesPointMap->GetNumberOfTuples();
bpData->SetNumberOfTuples(nPoints);
this->InterpolateCellToPoint(bpData, acData, this->AllBoundaries, nullptr, nPoints);
if (ctpData)
{
const bool meshPoints64Bit = ::Is64BitArray(this->AllBoundariesPointMap);
// set cell-to-pint data for internal mesh
for (vtkIdType pointI = 0; pointI < nPoints; pointI++)
{
ctpData->SetTuple(
GetLabelValue(this->AllBoundariesPointMap, pointI, meshPoints64Bit), pointI, bpData);
}
::AddArrayToFieldData(internalMesh->GetPointData(), ctpData, io.GetObjectName(), dimString);
}
}
}
// Handle face zones, only possible if FaceOwner has not been truncated
if (this->Parent->CopyDataToCellZones && this->FaceZoneMesh && this->FaceNeigh)
{
auto& zoneMap = this->faceZoneMap;
auto* zoneMesh = this->FaceZoneMesh;
unsigned int nZones = zoneMesh->GetNumberOfBlocks();
if (nZones && zoneMap.empty()) // sanity check
{
vtkWarningMacro(<< "No faceLabels saved for zones");
nZones = 0;
}
// Or NumInternalFaces...
const vtkIdType nInternalFaces = this->FaceNeigh->GetNumberOfTuples();
for (unsigned int zonei = 0; zonei < nZones; ++zonei)
{
auto* zm = vtkPolyData::SafeDownCast(zoneMesh->GetBlock(zonei));
const vtkIdType nZoneFaces = zm->GetNumberOfCells();
vtkIdList* faceLabels = nullptr;
const std::string zoneName = zoneMesh->GetMetaData(zonei)->Get(vtkCompositeDataSet::NAME());
{
faceLabels = zoneMap.findZone(zoneName);
if (faceLabels == nullptr)
{
if (nZoneFaces) // sanity check
{
vtkWarningMacro(<< "No faceLabels saved for zone: " << zoneName);
}
continue;
}
const vtkIdType nLabels = faceLabels->GetNumberOfIds();
if (nLabels != nZoneFaces) // sanity check
{
vtkWarningMacro(<< "Mismatch in faceLabels (" << nLabels << ") and number of faces ("
<< nZoneFaces << ") for zone: " << zoneName);
continue;
}
}
vtkNew<vtkFloatArray> zoneCellData;
zoneCellData->SetNumberOfComponents(nComponents);
zoneCellData->SetNumberOfTuples(nZoneFaces);
// Copy tuples from internalField
// TODO: revise this to use boundaryField values...
for (vtkIdType facei = 0; facei < nZoneFaces; ++facei)
{
float* dstData = zoneCellData->GetPointer(facei * nComponents);
const vtkIdType faceId = faceLabels->GetId(facei);
const vtkIdType ownCell = GetLabelValue(this->FaceOwner, faceId, faceOwner64Bit);
const float* ownData = iData->GetPointer(ownCell * nComponents);
if (faceId < nInternalFaces)
{
// Internal face. Use average
const vtkIdType neiCell = GetLabelValue(this->FaceNeigh, faceId, faceOwner64Bit);
const float* neiData = iData->GetPointer(neiCell * nComponents);
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
dstData[cmpt] = static_cast<float>(
0.5 * (static_cast<double>(ownData[cmpt]) + static_cast<double>(neiData[cmpt])));
}
}
else
{
// Boundary face.
// For now, just use owner side (cell) information.
// Revise/improve in the future (2021-02-04)
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
dstData[cmpt] = ownData[cmpt];
}
}
}
// Set data to zone mesh
::AddArrayToFieldData(zm->GetCellData(), zoneCellData, io.GetObjectName(), dimString);
// Point data temporarily unavailable (needs more reworking)
// // Copy points data
// zm->GetPointData()->ShallowCopy(this->InternalMesh->GetPointData());
}
}
}
//------------------------------------------------------------------------------
// Read point field at a timestep
void vtkOpenFOAMReaderPrivate::GetPointFieldAtTimeStep(const std::string& varName)
{
// Where to map data
vtkUnstructuredGrid* internalMesh = this->InternalMesh;
vtkMultiBlockDataSet* boundaryMesh = this->BoundaryMesh;
// Boundary information
const auto& patches = this->BoundaryDict;
vtkFoamIOobject io(this->CasePath, this->Parent);
vtkFoamDict dict;
if (!this->ReadFieldFile(io, dict, varName, this->Parent->PointDataArraySelection))
{
return;
}
if (io.GetClassName().compare(0, 5, "point") != 0)
{
vtkErrorMacro(<< io.GetFileName() << " is not a pointField");
return;
}
// Eg, from "pointScalarField" -> SCALAR_TYPE
const auto fieldDataType(vtkFoamTypes::FieldToEnum(io.GetClassName(), 5));
// -------------------------
// Handle dictionary lookups first
// The "dimensions" entry - stringify
const std::string dimString(this->ConstructDimensions(dict));
// The "internalField" entry
vtkFoamEntry* ifieldEntry = nullptr;
{
ifieldEntry = dict.Lookup("internalField");
if (ifieldEntry == nullptr)
{
vtkErrorMacro(<< "internalField not found in " << io.GetFileName());
return;
}
else if (ifieldEntry->FirstValue().GetType() == vtkFoamToken::EMPTYLIST)
{
if (this->NumPoints)
{
vtkErrorMacro(<< "internalField of " << io.GetFileName() << " is empty");
}
return;
}
}
// The "boundaryField" entry
const vtkFoamEntry* bfieldEntries = nullptr;
{
bfieldEntries = dict.Lookup("boundaryField");
if (bfieldEntries == nullptr)
{
vtkWarningMacro(<< "boundaryField not found in " << io.GetFileName()
<< " at time = " << this->TimeNames->GetValue(this->TimeStep));
return;
}
}
// -------------------------
// Generate internal field data
vtkSmartPointer<vtkFloatArray> iData =
this->FillField(*ifieldEntry, this->NumPoints, io, fieldDataType);
if (iData == nullptr)
{
return;
}
else if (iData->GetSize() == 0)
{
// Determined that there are no points. Ignore the field
return;
}
// Invariant for this field
const int nComponents = iData->GetNumberOfComponents();
// Add field only if internal Mesh exists (skip if not selected).
// Note we still need to read internalField even if internal mesh is
// not selected, since boundaries without value entries may refer to
// the internalField.
if (internalMesh != nullptr)
{
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->Parent->GetDecomposePolyhedra() && this->AdditionalCellPoints &&
!this->AdditionalCellPoints->empty())
{
// The point-to-cell interpolation to additional cell centroidal points for decomposed cells
const auto& addCellPoints = *this->AdditionalCellPoints;
const vtkIdType nAddPoints = static_cast<vtkIdType>(addCellPoints.size());
iData->Resize(this->NumPoints + nAddPoints);
const bool cellPoints64Bit =
(nAddPoints > 0 && ::Is64BitArray(this->AdditionalCellPoints->front()));
double interpolatedValue[9];
for (vtkIdType i = 0, newPointi = this->NumPoints; i < nAddPoints; ++i, ++newPointi)
{
vtkDataArray* acp = addCellPoints[i];
const vtkIdType nPoints = acp->GetDataSize();
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
interpolatedValue[cmpt] = 0; // zero contents
}
for (vtkIdType meshPointi = 0; meshPointi < nPoints; ++meshPointi)
{
const float* tuple =
iData->GetPointer(nComponents * GetLabelValue(acp, meshPointi, cellPoints64Bit));
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
interpolatedValue[cmpt] += tuple[cmpt];
}
}
const double weight = 1.0 / static_cast<double>(nPoints);
for (int cmpt = 0; cmpt < nComponents; ++cmpt)
{
interpolatedValue[cmpt] *= weight;
}
// Will automatically be converted to float
iData->InsertTuple(newPointi, interpolatedValue);
}
}
#endif
// Set data to internal mesh
::AddArrayToFieldData(internalMesh->GetPointData(), iData, io.GetObjectName(), dimString);
}
// Boundary
// Use patch-internal values as boundary values
unsigned int activeBoundaryIndex = 0;
for (const vtkFoamPatch& patch : patches)
{
if (patches.isActive(patch.index_))
{
auto* bm = vtkPolyData::SafeDownCast(boundaryMesh->GetBlock(activeBoundaryIndex));
vtkDataArray* bpMap = this->BoundaryPointMap->operator[](activeBoundaryIndex);
++activeBoundaryIndex;
const vtkIdType nPoints = bpMap->GetNumberOfTuples();
const bool meshPoints64Bit = ::Is64BitArray(bpMap);
vtkSmartPointer<vtkFloatArray> vData;
std::string bcType;
if (bfieldEntries != nullptr)
{
const vtkFoamEntry* bfieldEntry = bfieldEntries->Dictionary().Lookup(patch.name_, true);
if (bfieldEntry == nullptr)
{
// badEntry - but be silent about it
}
else if (bfieldEntry->FirstValue().GetType() != vtkFoamToken::DICTIONARY)
{
// badEntry - but be silent about it
}
else
{
const vtkFoamDict& patchDict = bfieldEntry->Dictionary();
// Look for "value" entry
vtkFoamEntry* vEntry = patchDict.Lookup("value");
if (vEntry == nullptr)
{
// For alternative fallback
const vtkFoamEntry* eptr = patchDict.Lookup("type");
if (eptr != nullptr)
{
bcType = eptr->ToString();
}
}
else
{
vData = this->FillField(*vEntry, nPoints, io, fieldDataType);
// silent about bad entry
}
}
}
if (vData == nullptr)
{
// No "value" entry
// Default to patch-internal values as boundary values
vData = vtkSmartPointer<vtkFloatArray>::New();
vData->SetNumberOfComponents(nComponents);
vData->SetNumberOfTuples(nPoints);
// Ad hoc handling of some known bcs without a "value"
if (bcType == "noSlip")
{
vData->FillValue(0);
}
else
{
for (vtkIdType pointi = 0; pointi < nPoints; ++pointi)
{
vData->SetTuple(pointi, GetLabelValue(bpMap, pointi, meshPoints64Bit), iData);
}
}
}
::AddArrayToFieldData(bm->GetPointData(), vData, io.GetObjectName(), dimString);
}
}
// Handle any zones
// ...
}
//------------------------------------------------------------------------------
// Read area field at a timestep
#if VTK_FOAMFILE_FINITE_AREA
void vtkOpenFOAMReaderPrivate::GetAreaFieldAtTimeStep(const std::string& varName)
{
// Where to map data
vtkPolyData* areaMesh = this->AreaMesh;
// Really simple, skip if not selected, or no areaMesh
const vtkIdType nFaces = (areaMesh ? areaMesh->GetNumberOfCells() : 0);
if (!nFaces)
{
return;
}
vtkFoamIOobject io(this->CasePath, this->Parent);
vtkFoamDict dict;
if (!this->ReadFieldFile(io, dict, varName, this->Parent->CellDataArraySelection))
{
return;
}
if (io.GetClassName().compare(0, 4, "area") != 0)
{
vtkErrorMacro(<< io.GetFileName() << " is not a areaField");
return;
}
// Eg, from "areaScalarField" -> SCALAR_TYPE
const auto fieldDataType(vtkFoamTypes::FieldToEnum(io.GetClassName(), 4));
// -------------------------
// Handle dictionary lookups first
// The "dimensions" entry - stringify
const std::string dimString(this->ConstructDimensions(dict));
// The "internalField" entry
vtkFoamEntry* ifieldEntry = nullptr;
{
ifieldEntry = dict.Lookup("internalField");
if (ifieldEntry == nullptr)
{
vtkErrorMacro(<< "internalField not found in " << io.GetFileName());
return;
}
else if (ifieldEntry->FirstValue().GetType() == vtkFoamToken::EMPTYLIST)
{
if (this->NumFaces)
{
vtkErrorMacro(<< "internalField of " << io.GetFileName() << " is empty");
}
return;
}
}
// Forget "boundaryField" entry
// - don't really handle edge constraints,
// -------------------------
// Generate internal field data
vtkSmartPointer<vtkFloatArray> iData = this->FillField(*ifieldEntry, nFaces, io, fieldDataType);
if (iData == nullptr)
{
return;
}
else if (iData->GetSize() == 0)
{
// Determined that there are no faces. Ignore the field
return;
}
// Set data to area mesh
::AddArrayToFieldData(areaMesh->GetCellData(), iData, io.GetObjectName(), dimString);
}
#endif
//------------------------------------------------------------------------------
vtkMultiBlockDataSet* vtkOpenFOAMReaderPrivate::MakeLagrangianMesh()
{
// Can have several clouds coming from different regions.
// Displayed in selection panel like this:
// - lagrangian/someCloud
// - /regionName/lagrangian/otherCloud
//
// Pick out active ones with matching region
auto* lagrangianMesh = vtkMultiBlockDataSet::New();
const std::string regionCloudPrefix(this->RegionPrefix() + "lagrangian/");
vtkDataArraySelection* selection = this->Parent->PatchDataArraySelection;
const vtkIdType nItems = selection->GetNumberOfArrays();
for (vtkIdType itemi = 0; itemi < nItems; ++itemi)
{
if (!selection->GetArraySetting(itemi))
{
continue;
}
const std::string displayName(selection->GetArrayName(itemi));
auto slash = displayName.rfind('/');
if (slash == std::string::npos || displayName.compare(0, ++slash, regionCloudPrefix) != 0)
{
continue;
}
// The cloud name is the final component of the displayName
const std::string cloudName(displayName.substr(slash));
// Equivalent to CurrentTimeRegionPath() + "lagrangian/{cloudName}"
std::string cloudPath(this->CurrentTimePath());
if (displayName[0] != '/')
{
cloudPath += '/';
}
cloudPath += displayName;
// Keep node/leaf structure consistent even if mesh doesn't exist
vtkNew<vtkPolyData> cloudMesh;
::AppendBlock(lagrangianMesh, cloudMesh, cloudName);
// Get the parcel positions as vtkPoints
vtkNew<vtkPoints> points;
{
bool missingCloud = true;
const std::string positionsPath(cloudPath + "/positions");
vtkFoamIOobject io(this->CasePath, this->Parent);
if (io.OpenOrGzip(positionsPath))
{
vtkFoamEntryValue dict(nullptr);
try
{
if (io.IsFloat64())
{
dict.ReadNonUniformList<vtkFoamToken::VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, double, 3, true>>(io);
}
else
{
dict.ReadNonUniformList<vtkFoamToken::VECTORLIST, //
vtkFoamRead::vectorListTraits<vtkFloatArray, float, 3, true>>(io);
}
// Transfer float tuples to points
auto* pointArray = dict.ReleasePtr<vtkFloatArray>();
points->SetData(pointArray);
pointArray->Delete();
missingCloud = false;
}
catch (const vtkFoamError& err)
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << err);
}
}
if (missingCloud)
{
vtkNew<vtkFloatArray> pointArray;
pointArray->SetNumberOfComponents(3);
points->SetData(pointArray);
}
const vtkIdType nParticles = points->GetNumberOfPoints();
cloudMesh->SetPoints(points);
// Cells (verts) for lagrangian mesh
vtkNew<vtkCellArray> verts;
verts->AllocateExact(nParticles, nParticles);
for (vtkIdType i = 0; i < nParticles; ++i)
{
verts->InsertNextCell(1, &i);
}
cloudMesh->SetVerts(verts);
}
const vtkIdType nParticles = cloudMesh->GetPoints()->GetNumberOfPoints();
// Can be empty or missing for a particular region or processor
if (!nParticles)
{
continue;
}
// Read lagrangian fields
const vtkIdType nFields = this->LagrangianFieldFiles->GetNumberOfValues();
for (vtkIdType fieldi = 0; fieldi < nFields; ++fieldi)
{
const std::string varPath(cloudPath + "/" + this->LagrangianFieldFiles->GetValue(fieldi));
vtkFoamIOobject io(this->CasePath, this->Parent);
if (!io.OpenOrGzip(varPath))
{
continue; // Could be empty or missing for a particular region or processor
}
// If the variable is disabled on selection panel then skip it
const std::string varDisplayName(io.GetObjectName());
if (this->Parent->LagrangianDataArraySelection->ArrayExists(varDisplayName.c_str()) &&
!this->Parent->GetLagrangianArrayStatus(varDisplayName.c_str()))
{
continue;
}
// Read the field file into dictionary
vtkFoamEntryValue dict(nullptr);
if (!dict.ReadField(io))
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << io.GetError());
continue;
}
// Set lagrangian values
if (dict.GetType() != vtkFoamToken::SCALARLIST &&
dict.GetType() != vtkFoamToken::VECTORLIST && dict.GetType() != vtkFoamToken::LABELLIST)
{
vtkErrorMacro(<< io.GetFileName() << ": Unsupported lagrangian field type "
<< io.GetClassName());
continue;
}
// Capture content as smart pointer
auto fldData = vtkSmartPointer<vtkDataArray>::Take(dict.ReleasePtr<vtkDataArray>());
const vtkIdType nValues = fldData->GetNumberOfTuples();
if (nValues != nParticles)
{
vtkErrorMacro(<< io.GetFileName() << ": Size mismatch for lagrangian mesh (" << nParticles
<< ") and field (" << nValues << ')');
continue;
}
// Provide identical data as cell and as point data
::AddArrayToFieldData(cloudMesh->GetCellData(), fldData, varDisplayName);
::AddArrayToFieldData(cloudMesh->GetPointData(), fldData, varDisplayName);
}
}
return lagrangianMesh;
}
//------------------------------------------------------------------------------
// Read specified file (typeName) from polyMesh directory as dictionary
std::unique_ptr<vtkFoamDict> vtkOpenFOAMReaderPrivate::GetPolyMeshFile(
const std::string& typeName, bool mandatory)
{
const std::string timeRegionDir(this->CurrentTimeRegionPath(this->PolyMeshTimeIndexFaces));
vtkFoamIOobject io(this->CasePath, this->Parent);
if (!io.OpenOrGzip(timeRegionDir + "/polyMesh/" + typeName))
{
if (mandatory)
{
vtkErrorMacro(<< "Error opening " << io.GetFileName() << ": " << io.GetError());
}
return nullptr;
}
std::unique_ptr<vtkFoamDict> dictPtr(new vtkFoamDict);
vtkFoamDict& dict = *dictPtr;
if (!dict.Read(io))
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << io.GetError());
return nullptr;
}
if (dict.GetType() != vtkFoamToken::DICTIONARY)
{
vtkErrorMacro(<< "The file type of " << io.GetFileName() << " is not a dictionary");
return nullptr;
}
return dictPtr;
}
//------------------------------------------------------------------------------
// Populate cell zone(s) mesh
bool vtkOpenFOAMReaderPrivate::GetCellZoneMesh(vtkMultiBlockDataSet* zoneMesh,
std::unique_ptr<vtkFoamLabelListList>& meshCellsPtr, const vtkFoamLabelListList& meshFaces,
vtkPoints* points)
{
const bool supportFields = this->Parent->CopyDataToCellZones;
typedef vtkUnstructuredGrid zoneVtkType;
constexpr const char* const zonePrefix = "cellZone";
constexpr const char* const zoneFileName = "cellZones";
constexpr const char* const labelsName = "cellLabels";
const vtkIdType maxLabels = this->NumCells;
auto& zoneMap = cellZoneMap;
zoneMap.clearAll(); // Remove all old ids and errors
auto zonesDictPtr(this->GetPolyMeshFile(zoneFileName, false));
if (zonesDictPtr == nullptr)
{
// Not an error if mesh zones are missing
return true;
}
const vtkFoamDict& zones = *zonesDictPtr;
const bool use64BitLabels = zones.IsLabel64();
vtkFoamError warnings;
const unsigned nZones = static_cast<unsigned>(zones.size());
// Detect duplicates
std::unordered_map<std::string, unsigned> zoneNames;
for (unsigned zonei = 0; zonei < nZones; ++zonei)
{
const std::string& zoneName = zones[zonei]->GetKeyword();
const vtkFoamDict& dict = zones[zonei]->Dictionary();
// Look up cellLabels
vtkFoamEntry* eptr = dict.Lookup(labelsName);
if (eptr == nullptr)
{
vtkErrorMacro(<< labelsName << " not found in " << zonePrefix);
return false;
}
vtkFoamEntryValue& labelsEntry = eptr->FirstValue();
// Need mesh, even if the list is empty
vtkNew<zoneVtkType> zm;
// Some OpenFOAM versions write an empty list as zero label only (in binary)
if (labelsEntry.GetType() == vtkFoamToken::EMPTYLIST || labelsEntry.IsLabel(0))
{
// For empty list - store empty mesh (for proper block ordering)
::SetBlock(zoneMesh, zonei, zm, zoneName);
continue;
}
else if (labelsEntry.GetType() != vtkFoamToken::LABELLIST)
{
vtkErrorMacro(<< labelsName << " is not a labelList");
return false;
}
// Detect duplicate zone names (being really paranoid)
{
auto insertion = zoneNames.emplace(zoneName, zonei);
if (!insertion.second)
{
vtkErrorMacro(<< zonePrefix << '/' << zoneName << " (zone:" << zonei
<< ") is duplicate of zone:" << insertion.first->second);
return false;
}
}
vtkDataArray& labels = labelsEntry.LabelList();
const vtkIdType nLabels = labels.GetNumberOfTuples();
// Transcribe into vtkIdList and remove questionable entries
auto elemIds = vtkSmartPointer<vtkIdList>::New();
elemIds->SetNumberOfIds(nLabels);
vtkIdType nUsed = 0;
for (vtkIdType idx = 0; idx < nLabels; ++idx)
{
const vtkIdType elemId = GetLabelValue(&labels, idx, use64BitLabels);
if (elemId >= 0 && elemId < maxLabels)
{
elemIds->SetId(nUsed, elemId);
++nUsed;
}
}
if (nLabels != nUsed)
{
elemIds->Resize(nUsed);
warnings << zonePrefix << '/' << zoneName << " had " << (nLabels - nUsed)
<< " out-of-range elements\n";
}
// Retain ids (in cache) for supporting fields
if (supportFields)
{
zoneMap.zones_[zoneName] = elemIds;
}
// Allocate new grid: we do not use resize() beforehand since it
// could lead to undefined pointers if we return by error
zm->Allocate(nUsed);
// Insert cells
this->InsertCellsToGrid(zm, meshCellsPtr, meshFaces, elemIds);
// Set points for zone
zm->SetPoints(points);
::SetBlock(zoneMesh, zonei, zm, zoneName);
}
if (!warnings.empty())
{
vtkWarningMacro(<< warnings);
}
return true;
}
//------------------------------------------------------------------------------
// Populate face zone(s) mesh
bool vtkOpenFOAMReaderPrivate::GetFaceZoneMesh(
vtkMultiBlockDataSet* zoneMesh, const vtkFoamLabelListList& meshFaces, vtkPoints* points)
{
const bool supportFields = this->Parent->CopyDataToCellZones;
typedef vtkPolyData zoneVtkType;
constexpr const char* const zonePrefix = "faceZone";
constexpr const char* const zoneFileName = "faceZones";
constexpr const char* const labelsName = "faceLabels";
const vtkIdType maxLabels = this->FaceOwner->GetNumberOfTuples(); // NumFaces
auto& zoneMap = faceZoneMap;
zoneMap.clearAll(); // Remove all old ids and errors
auto zonesDictPtr(this->GetPolyMeshFile(zoneFileName, false));
if (zonesDictPtr == nullptr)
{
// Not an error if mesh zones are missing
return true;
}
const vtkFoamDict& zones = *zonesDictPtr;
const bool use64BitLabels = zones.IsLabel64();
vtkFoamError warnings;
const unsigned nZones = static_cast<unsigned>(zones.size());
// Detect duplicates
std::unordered_map<std::string, unsigned> zoneNames;
// Additional bookkeeping for faceZones
const auto& patches = this->BoundaryDict;
// Ignore neighbour side of processor patches
const bool ignoreProcNeighbour = !this->ProcessorName.empty();
const vtkIdType nInternalFaces = this->NumInternalFaces;
for (unsigned zonei = 0; zonei < nZones; ++zonei)
{
const std::string& zoneName = zones[zonei]->GetKeyword();
const vtkFoamDict& dict = zones[zonei]->Dictionary();
// Look up faceLabels
vtkFoamEntry* eptr = dict.Lookup(labelsName);
if (eptr == nullptr)
{
vtkErrorMacro(<< labelsName << " not found in " << zonePrefix);
return false;
}
vtkFoamEntryValue& labelsEntry = eptr->FirstValue();
// Need mesh, even if the list is empty
vtkNew<zoneVtkType> zm;
// Some OpenFOAM versions write an empty list as zero label only (in binary)
if (labelsEntry.GetType() == vtkFoamToken::EMPTYLIST || labelsEntry.IsLabel(0))
{
// For empty list - store empty mesh (for proper block ordering)
::SetBlock(zoneMesh, zonei, zm, zoneName);
continue;
}
else if (labelsEntry.GetType() != vtkFoamToken::LABELLIST)
{
vtkErrorMacro(<< labelsName << " is not a labelList");
return false;
}
// Detect duplicate zone names (being really paranoid)
{
auto insertion = zoneNames.emplace(zoneName, zonei);
if (!insertion.second)
{
vtkErrorMacro(<< zonePrefix << '/' << zoneName << " (zone:" << zonei
<< ") is duplicate of zone:" << insertion.first->second);
return false;
}
}
vtkDataArray& labels = labelsEntry.LabelList();
const vtkIdType nLabels = labels.GetNumberOfTuples();
// Transcribe into vtkIdList and remove questionable entries
auto elemIds = vtkSmartPointer<vtkIdList>::New();
elemIds->SetNumberOfIds(nLabels);
vtkIdType nUsed = 0, nNonOwner = 0;
for (vtkIdType idx = 0; idx < nLabels; ++idx)
{
const vtkIdType elemId = GetLabelValue(&labels, idx, use64BitLabels);
if (elemId >= 0 && elemId < maxLabels)
{
const vtkIdType patchId =
((ignoreProcNeighbour && elemId >= nInternalFaces) ? patches.whichPatch(elemId) : -1);
// NB: the test for patch owner is always true for non-processor patches
if (patchId >= 0 && !patches[patchId].owner_)
{
++nNonOwner;
}
else
{
elemIds->SetId(nUsed, elemId);
++nUsed;
}
}
}
if (nLabels != nUsed)
{
elemIds->Resize(nUsed);
if (nLabels != (nUsed + nNonOwner))
{
warnings << zonePrefix << '/' << zoneName << " had " << (nLabels - (nUsed + nNonOwner))
<< " out-of-range elements\n";
}
}
// Retain ids (in cache) for supporting fields
if (supportFields)
{
zoneMap.zones_[zoneName] = elemIds;
}
// Allocate new grid: we do not use resize() beforehand since it
// could lead to undefined pointer if we return by error
zm->AllocateEstimate(nUsed, 1);
// Insert faces
this->InsertFacesToGrid(zm, meshFaces, 0, nUsed, elemIds);
// Set points for zone
zm->SetPoints(points);
::SetBlock(zoneMesh, zonei, zm, zoneName);
}
if (!warnings.empty())
{
vtkWarningMacro(<< warnings);
}
return true;
}
//------------------------------------------------------------------------------
// Populate point zone(s) mesh
bool vtkOpenFOAMReaderPrivate::GetPointZoneMesh(vtkMultiBlockDataSet* zoneMesh, vtkPoints* points)
{
const bool supportFields = false; // this->Parent->CopyDataToCellZones;
typedef vtkPolyData zoneVtkType;
constexpr const char* const zonePrefix = "pointZone";
constexpr const char* const zoneFileName = "pointZones";
constexpr const char* const labelsName = "pointLabels";
const vtkIdType maxLabels = this->NumPoints;
auto& zoneMap = pointZoneMap;
zoneMap.clearAll(); // Remove all old ids and errors
auto zonesDictPtr(this->GetPolyMeshFile(zoneFileName, false));
if (zonesDictPtr == nullptr)
{
// Not an error if mesh zones are missing
return true;
}
const vtkFoamDict& zones = *zonesDictPtr;
const bool use64BitLabels = zones.IsLabel64();
vtkFoamError warnings;
const unsigned nZones = static_cast<unsigned>(zones.size());
// Detect duplicates
std::unordered_map<std::string, unsigned> zoneNames;
for (unsigned zonei = 0; zonei < nZones; ++zonei)
{
const std::string& zoneName = zones[zonei]->GetKeyword();
const vtkFoamDict& dict = zones[zonei]->Dictionary();
// Look up pointLabels
vtkFoamEntry* eptr = dict.Lookup(labelsName);
if (eptr == nullptr)
{
vtkErrorMacro(<< labelsName << " not found in " << zonePrefix);
return false;
}
vtkFoamEntryValue& labelsEntry = eptr->FirstValue();
// Need mesh, even if the list is empty
vtkNew<zoneVtkType> zm;
// Some OpenFOAM versions write an empty list as zero label only (in binary)
if (labelsEntry.GetType() == vtkFoamToken::EMPTYLIST || labelsEntry.IsLabel(0))
{
// For empty list - store empty mesh (for proper block ordering)
::SetBlock(zoneMesh, zonei, zm, zoneName);
continue;
}
else if (labelsEntry.GetType() != vtkFoamToken::LABELLIST)
{
vtkErrorMacro(<< labelsName << " is not a labelList");
return false;
}
// Detect duplicate zone names (being really paranoid)
{
auto insertion = zoneNames.emplace(zoneName, zonei);
if (!insertion.second)
{
vtkErrorMacro(<< zonePrefix << '/' << zoneName << " (zone:" << zonei
<< ") is duplicate of zone:" << insertion.first->second);
return false;
}
}
vtkDataArray& labels = labelsEntry.LabelList();
const vtkIdType nLabels = labels.GetNumberOfTuples();
// Transcribe into vtkIdList and remove questionable entries
// Not completely necessary since the VTK_VERTEX has the value anyhow, but do it
// to filter out potentially bad entries and be more similar to cell/face zones.
// - besides which, not many point sets being used anyhow.
auto elemIds = vtkSmartPointer<vtkIdList>::New();
elemIds->SetNumberOfIds(nLabels);
vtkIdType nUsed = 0;
for (vtkIdType idx = 0; idx < nLabels; ++idx)
{
const vtkIdType elemId = GetLabelValue(&labels, idx, use64BitLabels);
if (elemId >= 0 && elemId < maxLabels)
{
elemIds->SetId(nUsed, elemId);
++nUsed;
}
}
if (nLabels != nUsed)
{
elemIds->Resize(nUsed);
warnings << zonePrefix << '/' << zoneName << " had " << (nLabels - nUsed)
<< " out-of-range elements\n";
}
// Retain ids (in cache) for supporting fields
if (supportFields)
{
zoneMap.zones_[zoneName] = elemIds;
}
// Allocate new grid: we do not use resize() beforehand since it
// could lead to undefined pointer if we return by error
zm->AllocateEstimate(nUsed, 1);
// Insert vertex cells
for (vtkIdType pointi = 0; pointi < nUsed; ++pointi)
{
const vtkIdType elemId = elemIds->GetId(pointi);
zm->InsertNextCell(VTK_VERTEX, 1, &elemId);
}
// Set points for zone
zm->SetPoints(points);
::SetBlock(zoneMesh, zonei, zm, zoneName);
}
if (!warnings.empty())
{
vtkWarningMacro(<< warnings);
}
return true;
}
//------------------------------------------------------------------------------
// Populate face zone(s) mesh
#if VTK_FOAMFILE_FINITE_AREA
bool vtkOpenFOAMReaderPrivate::GetAreaMesh(
vtkPolyData* areaMesh, const vtkFoamLabelListList& meshFaces, vtkPoints* points)
{
// Tie to faces instance (like zones etc)
const std::string timeRegionDir(this->CurrentTimeRegionPath(*this->PolyMeshTimeIndexFaces));
auto& zoneMap = this->areaMeshMap;
zoneMap.clearAll(); // Remove all old ids and errors
vtkFoamIOobject io(this->CasePath, this->Parent);
// Read faMesh/faceLabels
if (!io.OpenOrGzip(timeRegionDir + "/faMesh/faceLabels"))
{
// Not an error if missing
return true;
}
const bool use64BitLabels = io.IsLabel64();
vtkSmartPointer<vtkDataArray> labelArray;
{
vtkFoamEntryValue dict(nullptr);
dict.SetStreamOption(io);
try
{
if (use64BitLabels)
{
dict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt64Array, vtkTypeInt64>>(io);
}
else
{
dict.ReadNonUniformList<vtkFoamToken::LABELLIST, //
vtkFoamRead::listTraits<vtkTypeInt32Array, vtkTypeInt32>>(io);
}
// Capture content as smart pointer
labelArray.TakeReference(dict.ReleasePtr<vtkDataArray>());
}
catch (const vtkFoamError& err)
{
vtkErrorMacro(<< "Error reading line " << io.GetLineNumber() << " of " << io.GetFileName()
<< ": " << err);
return false;
}
io.Close();
}
if (labelArray)
{
vtkDataArray& labels = *labelArray;
const vtkIdType nLabels = labels.GetNumberOfTuples();
// Transcribe into vtkIdList. Don't check for questionable entries just yet
auto elemIds = vtkSmartPointer<vtkIdList>::New();
elemIds->SetNumberOfIds(nLabels);
for (vtkIdType idx = 0; idx < nLabels; ++idx)
{
const vtkTypeInt64 elemId = GetLabelValue(labelArray, idx, use64BitLabels);
elemIds->SetId(idx, elemId);
}
zoneMap.zones_[NAME_AREAMESH] = elemIds;
// Allocate new grid: we do not use resize() beforehand since it
// could lead to undefined pointer if we return by error
areaMesh->AllocateEstimate(nLabels, 1);
// Insert faces
this->InsertFacesToGrid(areaMesh, meshFaces, 0, nLabels, elemIds);
// Set points for zone
areaMesh->SetPoints(points);
return true;
}
return false;
}
#endif
//------------------------------------------------------------------------------
// return 0 if there's any error, 1 if success
int vtkOpenFOAMReaderPrivate::RequestData(vtkMultiBlockDataSet* output)
{
if (!this->HasPolyMesh())
{
// Ignore a region without a mesh, but will normally be precluded earlier
vtkWarningMacro("Called RequestData without a mesh.");
return 1;
}
//----------------------------------------
// Determine changes in state
// Basics
const bool changedStorageType =
(this->Parent->Use64BitLabels != this->Parent->Use64BitLabelsOld) ||
(this->Parent->Use64BitFloats != this->Parent->Use64BitFloatsOld);
// Mesh changes
const bool topoChanged = (this->TimeStepOld < 0) || (this->FaceOwner == nullptr) ||
(this->PolyMeshTimeIndexFaces[this->TimeStep] !=
this->PolyMeshTimeIndexFaces[this->TimeStepOld]);
const bool pointsMoved = (this->TimeStepOld < 0) ||
(this->PolyMeshTimeIndexPoints[this->TimeStep] !=
this->PolyMeshTimeIndexPoints[this->TimeStepOld]);
// Internal mesh
bool recreateInternalMesh = (changedStorageType) || (topoChanged) || (!this->Parent->CacheMesh) ||
(this->Parent->SkipZeroTime != this->Parent->SkipZeroTimeOld) ||
(this->Parent->ListTimeStepsByControlDict != this->Parent->ListTimeStepsByControlDictOld);
// Internal mesh - selection changes
recreateInternalMesh |=
(this->InternalMeshSelectionStatus != this->InternalMeshSelectionStatusOld);
#if VTK_FOAMFILE_DECOMPOSE_POLYHEDRA
if (this->InternalMeshSelectionStatus)
{
// Cell representation changed that affects the internalMesh
recreateInternalMesh |=
(this->Parent->DecomposePolyhedra != this->Parent->DecomposePolyhedraOld);
}
#endif
// NOTE: this is still not quite right for zones, but until we get better separation
// - can remove zones without triggering reread
recreateInternalMesh |=
(this->Parent->ReadZones && (this->Parent->ReadZones != this->Parent->ReadZonesOld));
// Boundary mesh
bool recreateBoundaryMesh = (changedStorageType) ||
(this->Parent->PatchDataArraySelection->GetMTime() != this->Parent->PatchSelectionMTimeOld) ||
(this->Parent->CreateCellToPoint != this->Parent->CreateCellToPointOld);
// Fields
bool updateVariables = (changedStorageType) || (this->TimeStep != this->TimeStepOld) ||
(this->Parent->CellDataArraySelection->GetMTime() != this->Parent->CellSelectionMTimeOld) ||
(this->Parent->PointDataArraySelection->GetMTime() != this->Parent->PointSelectionMTimeOld) ||
(this->Parent->LagrangianDataArraySelection->GetMTime() !=
this->Parent->LagrangianSelectionMTimeOld) ||
(this->Parent->PositionsIsIn13Format != this->Parent->PositionsIsIn13FormatOld) ||
(this->Parent->AddDimensionsToArrayNames != this->Parent->AddDimensionsToArrayNamesOld);
// Apply these changes too
recreateBoundaryMesh |= recreateInternalMesh;
updateVariables |= recreateBoundaryMesh;
const bool moveInternalPoints = !recreateInternalMesh && pointsMoved;
const bool moveBoundaryPoints = !recreateBoundaryMesh && pointsMoved;
// Has eulerian fields if there is an internal mesh
const bool createEulerians = this->Parent->PatchDataArraySelection->ArrayExists(
(this->RegionPrefix() + NAME_INTERNALMESH).c_str());
vtkFoamDebug(<< "RequestData (" << this->RegionName << "/" << this->ProcessorName << ")\n"
<< " internal=" << recreateInternalMesh //
<< " boundary=" << recreateBoundaryMesh //
<< " zones=" << this->Parent->GetReadZones() //
<< " topoChanged=" << topoChanged //
<< " pointsMoved=" << pointsMoved //
<< " variables=" << updateVariables //
<< " eulerians=" << createEulerians //
<< "\n");
//----------------------------------------
// Determine if we need to reconstruct meshes
if (recreateInternalMesh)
{
this->ClearInternalMeshes();
this->ClearZoneMeshes();
}
if (recreateBoundaryMesh)
{
this->ClearBoundaryMeshes();
}
// Discard unwanted remnant zones
if (!this->Parent->GetReadZones())
{
this->ClearZoneMeshes();
}
// Mesh primitives
vtkSmartPointer<vtkFloatArray> pointArray;
std::unique_ptr<vtkFoamLabelListList> meshCells;
std::unique_ptr<vtkFoamLabelListList> meshFaces;
if (createEulerians && (recreateInternalMesh || recreateBoundaryMesh))
{
const std::string facesInstance = this->CurrentTimeRegionPath(this->PolyMeshTimeIndexFaces);
vtkFoamDebug(<< "Read faces: " << facesInstance << "\n");
// Read polyMesh/faces, create the list of faces, set the number of faces
meshFaces = this->ReadFacesFile(facesInstance);
if (!meshFaces)
{
return 0;
}
this->Parent->UpdateProgress(0.2);
}
if (createEulerians && recreateInternalMesh)
{
const std::string facesInstance = this->CurrentTimeRegionPath(this->PolyMeshTimeIndexFaces);
vtkFoamDebug(<< "Read owner/neighbour: " << facesInstance << "\n");
// Read polyMesh/{owner,neighbour}, create FaceOwner/FaceNeigh
if (!this->ReadOwnerNeighbourFiles(facesInstance))
{
return 0;
}
this->Parent->UpdateProgress(0.3);
}
if (createEulerians &&
(recreateInternalMesh ||
(recreateBoundaryMesh && !recreateInternalMesh && this->InternalMesh == nullptr) ||
moveInternalPoints || moveBoundaryPoints))
{
const std::string pointsInstance = this->CurrentTimeRegionPath(this->PolyMeshTimeIndexPoints);
vtkFoamDebug(<< "Read points: " << pointsInstance << "\n");
// Read polyMesh/points, set the number of faces
pointArray = this->ReadPointsFile(pointsInstance);
if ((recreateInternalMesh && pointArray.Get() == nullptr) ||
(meshFaces && !this->CheckFaceList(*meshFaces)))
{
return 0;
}
this->Parent->UpdateProgress(0.4);
}
// Create internal mesh, only if required for display
if (createEulerians && recreateInternalMesh)
{
const std::string displayName(this->RegionPrefix() + NAME_INTERNALMESH);
if (this->Parent->PatchDataArraySelection->ArrayExists(displayName.c_str()) &&
this->Parent->GetPatchArrayStatus(displayName.c_str()))
{
this->InternalMesh = this->MakeInternalMesh(meshCells, *meshFaces, pointArray);
}
}
// Read and construct zones
if (createEulerians && recreateInternalMesh && this->Parent->GetReadZones())
{
vtkSmartPointer<vtkPoints> tmpPoints; // Localized vtkPoints storage
vtkPoints* points;
if (this->InternalMesh != nullptr)
{
points = this->InternalMesh->GetPoints();
}
else
{
tmpPoints = vtkSmartPointer<vtkPoints>::New();
tmpPoints->SetData(pointArray);
points = tmpPoints;
}
this->CellZoneMesh = vtkMultiBlockDataSet::New();
if (!this->GetCellZoneMesh(this->CellZoneMesh, meshCells, *meshFaces, points) ||
this->CellZoneMesh->GetNumberOfBlocks() == 0)
{
this->cellZoneMap.clearAll();
this->CellZoneMesh->Delete();
this->CellZoneMesh = nullptr;
}
this->FaceZoneMesh = vtkMultiBlockDataSet::New();
if (!this->GetFaceZoneMesh(this->FaceZoneMesh, *meshFaces, points) ||
this->FaceZoneMesh->GetNumberOfBlocks() == 0)
{
this->faceZoneMap.clearAll();
this->FaceZoneMesh->Delete();
this->FaceZoneMesh = nullptr;
}
this->PointZoneMesh = vtkMultiBlockDataSet::New();
if (!this->GetPointZoneMesh(this->PointZoneMesh, points) ||
this->PointZoneMesh->GetNumberOfBlocks() == 0)
{
this->pointZoneMap.clearAll();
this->PointZoneMesh->Delete();
this->PointZoneMesh = nullptr;
}
#if VTK_FOAMFILE_FINITE_AREA
// Needs a proper selection mechanism
this->AreaMesh = vtkPolyData::New();
if (!this->GetAreaMesh(this->AreaMesh, *meshFaces, points))
{
this->areaMeshMap.clearAll();
this->AreaMesh->Delete();
this->AreaMesh = nullptr;
}
#endif
}
// Don't need meshCells beyond here
meshCells.reset(nullptr);
// Note: preserve face owner/neighbour information for reconstruction, face zones etc.
// Create boundary mesh
if (createEulerians && recreateBoundaryMesh)
{
vtkFloatArray* boundaryPointArray = pointArray.Get();
if (boundaryPointArray == nullptr)
{
boundaryPointArray = vtkFloatArray::SafeDownCast(this->InternalMesh->GetPoints()->GetData());
}
this->BoundaryMesh = this->MakeBoundaryMesh(*meshFaces, boundaryPointArray);
if (this->BoundaryMesh == nullptr)
{
return 0;
}
}
// Don't need meshFaces beyond here
meshFaces.reset(nullptr);
// Update the points in each mesh, if the point coordinates changed
// Update internal mesh first - decomposed polyhedra will modify pointArray
if (createEulerians && moveInternalPoints)
{
if (this->InternalMesh != nullptr)
{
vtkFoamDebug("Move internal points\n");
if (!this->MoveInternalMesh(this->InternalMesh, pointArray))
{
return 0; // Failed!
}
}
}
// Update zones
if (createEulerians && moveInternalPoints)
{
vtkSmartPointer<vtkPoints> tmpPoints; // Localized vtkPoints storage
vtkPoints* points;
if (this->InternalMesh != nullptr)
{
points = this->InternalMesh->GetPoints();
}
else
{
tmpPoints = vtkSmartPointer<vtkPoints>::New();
tmpPoints->SetData(pointArray);
points = tmpPoints;
}
if (this->PointZoneMesh != nullptr)
{
auto* zoneMesh = this->PointZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
vtkPolyData::SafeDownCast(zoneMesh->GetBlock(zonei))->SetPoints(points);
}
}
if (this->FaceZoneMesh != nullptr)
{
auto* zoneMesh = this->FaceZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
vtkPolyData::SafeDownCast(zoneMesh->GetBlock(zonei))->SetPoints(points);
}
}
if (this->CellZoneMesh != nullptr)
{
auto* zoneMesh = this->CellZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
vtkUnstructuredGrid::SafeDownCast(zoneMesh->GetBlock(zonei))->SetPoints(points);
}
}
}
// Update boundary mesh
if (createEulerians && moveBoundaryPoints)
{
if (this->BoundaryMesh != nullptr)
{
vtkFoamDebug("Move boundary points\n");
this->MoveBoundaryMesh(this->BoundaryMesh, pointArray);
}
}
// Don't need mesh points beyond here...
// Be explicit: pointArray = vtkSmartPointer<vtkFloatArray>{};
this->Parent->UpdateProgress(0.5);
// Eulerian variables
if (updateVariables && createEulerians)
{
// Clean up arrays of the previous timestep
// Internal
if (!recreateInternalMesh && this->InternalMesh != nullptr)
{
this->InternalMesh->GetCellData()->Initialize();
this->InternalMesh->GetPointData()->Initialize();
}
// Boundary
if (!recreateBoundaryMesh && this->BoundaryMesh != nullptr)
{
for (unsigned int i = 0; i < this->BoundaryMesh->GetNumberOfBlocks(); i++)
{
auto* bm = vtkPolyData::SafeDownCast(this->BoundaryMesh->GetBlock(i));
bm->GetCellData()->Initialize();
bm->GetPointData()->Initialize();
}
}
// Zones. This may need some reworking...
if (!recreateInternalMesh)
{
if (this->CellZoneMesh != nullptr)
{
auto* zoneMesh = this->CellZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
auto* zm = vtkUnstructuredGrid::SafeDownCast(zoneMesh->GetBlock(zonei));
zm->GetCellData()->Initialize();
zm->GetPointData()->Initialize();
}
}
if (this->FaceZoneMesh != nullptr)
{
auto* zoneMesh = this->FaceZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
auto* zm = vtkPolyData::SafeDownCast(zoneMesh->GetBlock(zonei));
zm->GetCellData()->Initialize();
zm->GetPointData()->Initialize();
}
}
if (this->PointZoneMesh != nullptr)
{
auto* zoneMesh = this->PointZoneMesh;
for (unsigned int zonei = 0; zonei < zoneMesh->GetNumberOfBlocks(); ++zonei)
{
auto* zm = vtkPolyData::SafeDownCast(zoneMesh->GetBlock(zonei));
zm->GetCellData()->Initialize();
zm->GetPointData()->Initialize();
}
}
}
// read field data variables into Internal/Boundary meshes
vtkIdType nFieldsRead = 0;
vtkIdType nFieldsToRead = (this->VolFieldFiles->GetNumberOfValues() +
this->DimFieldFiles->GetNumberOfValues() + this->PointFieldFiles->GetNumberOfValues());
#if VTK_FOAMFILE_FINITE_AREA
nFieldsToRead += this->AreaFieldFiles->GetNumberOfValues();
#endif
for (vtkIdType i = 0; i < this->VolFieldFiles->GetNumberOfValues(); ++i)
{
this->GetVolFieldAtTimeStep(this->VolFieldFiles->GetValue(i));
this->Parent->UpdateProgress(0.5 + (0.5 * ++nFieldsRead) / nFieldsToRead);
}
for (vtkIdType i = 0; i < this->DimFieldFiles->GetNumberOfValues(); ++i)
{
this->GetVolFieldAtTimeStep(this->DimFieldFiles->GetValue(i), true); // Internal field
this->Parent->UpdateProgress(0.5 + (0.5 * ++nFieldsRead) / nFieldsToRead);
}
for (vtkIdType i = 0; i < this->PointFieldFiles->GetNumberOfValues(); ++i)
{
this->GetPointFieldAtTimeStep(this->PointFieldFiles->GetValue(i));
this->Parent->UpdateProgress(0.5 + (0.5 * ++nFieldsRead) / nFieldsToRead);
}
#if VTK_FOAMFILE_FINITE_AREA
for (vtkIdType i = 0; i < this->AreaFieldFiles->GetNumberOfValues(); ++i)
{
this->GetAreaFieldAtTimeStep(this->AreaFieldFiles->GetValue(i));
this->Parent->UpdateProgress(0.5 + (0.5 * ++nFieldsRead) / nFieldsToRead);
}
#endif
}
// Read lagrangian mesh and fields
vtkMultiBlockDataSet* lagrangianMesh = nullptr;
if (updateVariables)
{
lagrangianMesh = this->MakeLagrangianMesh();
}
// Add Internal mesh to final output only if selected for display
if (this->InternalMesh != nullptr)
{
::SetBlock(output, 0, this->InternalMesh, NAME_INTERNALMESH);
}
// Set boundary meshes/data as output
if (this->BoundaryMesh != nullptr && this->BoundaryMesh->GetNumberOfBlocks())
{
::AppendBlock(output, this->BoundaryMesh, "boundary");
}
#if VTK_FOAMFILE_FINITE_AREA
// Set finiteArea mesh/data as output
if (this->AreaMesh != nullptr)
{
::AppendBlock(output, this->AreaMesh, NAME_AREAMESH);
}
#endif
// Set lagrangian mesh as output
if (lagrangianMesh != nullptr)
{
if (lagrangianMesh->GetNumberOfBlocks())
{
::AppendBlock(output, lagrangianMesh, "lagrangian");
}
lagrangianMesh->Delete();
}
if (this->Parent->GetReadZones())
{
// Add zone meshes (if any) to output
vtkNew<vtkMultiBlockDataSet> zones;
if (this->CellZoneMesh != nullptr)
{
::AppendBlock(zones, this->CellZoneMesh, "cellZones");
}
if (this->FaceZoneMesh != nullptr)
{
::AppendBlock(zones, this->FaceZoneMesh, "faceZones");
}
if (this->PointZoneMesh != nullptr)
{
::AppendBlock(zones, this->PointZoneMesh, "pointZones");
}
if (zones->GetNumberOfBlocks())
{
::AppendBlock(output, zones, "zones");
}
}
if (this->Parent->GetCacheMesh())
{
this->TimeStepOld = this->TimeStep;
}
else
{
this->ClearMeshes();
this->TimeStepOld = TIMEINDEX_UNVISITED;
}
this->InternalMeshSelectionStatusOld = this->InternalMeshSelectionStatus;
this->Parent->UpdateProgress(1.0);
return 1;
}
//------------------------------------------------------------------------------
// constructor
vtkOpenFOAMReader::vtkOpenFOAMReader()
{
this->SetNumberOfInputPorts(0);
this->Parent = this;
// must be false to avoid reloading by vtkAppendCompositeDataLeaves::Update()
this->Refresh = false;
// initialize file name
this->FileName = nullptr;
this->FileNameOld = new vtkStdString;
// Case path
this->CasePath = vtkCharArray::New();
// Child readers
this->Readers = vtkCollection::New();
// VTK CLASSES
this->PatchDataArraySelection = vtkDataArraySelection::New();
this->CellDataArraySelection = vtkDataArraySelection::New();
this->PointDataArraySelection = vtkDataArraySelection::New();
this->LagrangianDataArraySelection = vtkDataArraySelection::New();
this->PatchSelectionMTimeOld = 0;
this->CellSelectionMTimeOld = 0;
this->PointSelectionMTimeOld = 0;
this->LagrangianSelectionMTimeOld = 0;
// For creating cell-to-point translated data
this->CreateCellToPoint = 1;
this->CreateCellToPointOld = 1;
// For caching mesh
this->CacheMesh = 1;
// For decomposing polyhedra
this->DecomposePolyhedra = 0;
this->DecomposePolyhedraOld = 0;
// for lagrangian/positions format without the additional data that existed
// in OpenFOAM 1.4-2.4
this->PositionsIsIn13Format = 1;
this->PositionsIsIn13FormatOld = 1;
// Zone handling
this->ReadZones = 0; // turned off by default
this->ReadZonesOld = 0;
this->CopyDataToCellZones = true;
// Ignore 0/ time directory, which is normally missing Lagrangian fields
this->SkipZeroTime = false;
this->SkipZeroTimeOld = false;
// determine if time directories are to be listed according to controlDict
this->ListTimeStepsByControlDict = 0;
this->ListTimeStepsByControlDictOld = 0;
// add dimensions to array names
this->AddDimensionsToArrayNames = 0;
this->AddDimensionsToArrayNamesOld = 0;
// Lagrangian paths
this->LagrangianPaths = vtkStringArray::New();
this->CurrentReaderIndex = 0;
this->NumberOfReaders = 0;
this->Use64BitLabels = false;
this->Use64BitFloats = true;
this->Use64BitLabelsOld = false;
this->Use64BitFloatsOld = true;
}
//------------------------------------------------------------------------------
// destructor
vtkOpenFOAMReader::~vtkOpenFOAMReader()
{
this->LagrangianPaths->Delete();
this->PatchDataArraySelection->Delete();
this->CellDataArraySelection->Delete();
this->PointDataArraySelection->Delete();
this->LagrangianDataArraySelection->Delete();
this->Readers->Delete();
this->CasePath->Delete();
this->SetFileName(nullptr);
delete this->FileNameOld;
}
//------------------------------------------------------------------------------
// CanReadFile
int vtkOpenFOAMReader::CanReadFile(const char* vtkNotUsed(fileName))
{
return 1; // so far CanReadFile does nothing.
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::SetUse64BitLabels(bool val)
{
if (this->Use64BitLabels != val)
{
this->Use64BitLabels = val;
this->Refresh = true; // Need to reread everything
this->Modified();
}
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::SetUse64BitFloats(bool val)
{
if (this->Use64BitFloats != val)
{
this->Use64BitFloats = val;
this->Refresh = true; // Need to reread everything
this->Modified();
}
}
//------------------------------------------------------------------------------
// Printing
void vtkOpenFOAMReader::PrintTimes(ostream& os, vtkIndent indent, bool full) const
{
os << indent << "TimeInformation (SkipZeroTime: " << this->SkipZeroTime << ")\n";
this->Readers->InitTraversal();
for (vtkObject* obj; (obj = this->Readers->GetNextItemAsObject()) != nullptr;)
{
// Is private implementation
{
auto* reader = vtkOpenFOAMReaderPrivate::SafeDownCast(obj);
if (reader)
{
reader->PrintTimes(os, indent.GetNextIndent(), full);
continue;
}
}
// Is sub-reader for derived type
{
auto* reader = vtkOpenFOAMReader::SafeDownCast(obj);
if (reader)
{
reader->PrintTimes(os, indent.GetNextIndent(), full);
continue;
}
}
}
}
void vtkOpenFOAMReader::PrintSelf(ostream& os, vtkIndent indent)
{
this->Superclass::PrintSelf(os, indent);
os << indent << "File Name: " << (this->FileName ? this->FileName : "(none)") << endl;
os << indent << "Refresh: " << this->Refresh << endl;
os << indent << "CreateCellToPoint: " << this->CreateCellToPoint << endl;
os << indent << "CacheMesh: " << this->CacheMesh << endl;
os << indent << "DecomposePolyhedra: " << this->DecomposePolyhedra << endl;
os << indent << "PositionsIsIn13Format: " << this->PositionsIsIn13Format << endl;
os << indent << "ReadZones: " << this->ReadZones << endl;
os << indent << "AddDimensionsToArrayNames: " << this->AddDimensionsToArrayNames << endl;
this->PrintTimes(os, indent);
// PrintSelf for any type of sub-readers
this->Readers->InitTraversal();
for (vtkObject* obj; (obj = this->Readers->GetNextItemAsObject()) != nullptr;)
{
os << indent << "Reader instance " << static_cast<void*>(obj) << ": \n";
obj->PrintSelf(os, indent.GetNextIndent());
}
}
//------------------------------------------------------------------------------
// selection list handlers
int vtkOpenFOAMReader::GetNumberOfSelectionArrays(vtkDataArraySelection* s)
{
return s->GetNumberOfArrays();
}
int vtkOpenFOAMReader::GetSelectionArrayStatus(vtkDataArraySelection* s, const char* name)
{
return s->ArrayIsEnabled(name);
}
void vtkOpenFOAMReader::SetSelectionArrayStatus(
vtkDataArraySelection* s, const char* name, int status)
{
vtkMTimeType mTime = s->GetMTime();
if (status)
{
s->EnableArray(name);
}
else
{
s->DisableArray(name);
}
if (mTime != s->GetMTime()) // indicate that the pipeline needs to be updated
{
this->Modified();
}
}
const char* vtkOpenFOAMReader::GetSelectionArrayName(vtkDataArraySelection* s, int index)
{
return s->GetArrayName(index);
}
void vtkOpenFOAMReader::DisableAllSelectionArrays(vtkDataArraySelection* s)
{
vtkMTimeType mTime = s->GetMTime();
s->DisableAllArrays();
if (mTime != s->GetMTime())
{
this->Modified();
}
}
void vtkOpenFOAMReader::EnableAllSelectionArrays(vtkDataArraySelection* s)
{
vtkMTimeType mTime = s->GetMTime();
s->EnableAllArrays();
if (mTime != s->GetMTime())
{
this->Modified();
}
}
//------------------------------------------------------------------------------
// RequestInformation
int vtkOpenFOAMReader::RequestInformation(vtkInformation* vtkNotUsed(request),
vtkInformationVector** vtkNotUsed(inputVector), vtkInformationVector* outputVector)
{
if (!this->FileName || !*(this->FileName))
{
vtkErrorMacro("FileName has to be specified!");
return 0;
}
if (this->Parent == this &&
((*this->FileNameOld != this->FileName) || this->Refresh ||
(this->ListTimeStepsByControlDict != this->ListTimeStepsByControlDictOld) ||
(this->SkipZeroTime != this->SkipZeroTimeOld)))
{
// Retain selection status when just refreshing a case
if (!this->FileNameOld->empty() && *this->FileNameOld != this->FileName)
{
// Clear selections
this->CellDataArraySelection->RemoveAllArrays();
this->PointDataArraySelection->RemoveAllArrays();
this->LagrangianDataArraySelection->RemoveAllArrays();
this->PatchDataArraySelection->RemoveAllArrays();
}
// Reset NumberOfReaders here so that the variable will not be
// reset unwantedly when MakeInformationVector() is called from
// vtkPOpenFOAMReader
this->NumberOfReaders = 0;
if (!this->MakeInformationVector(outputVector, {}) || !this->MakeMetaDataAtTimeStep(true))
{
return 0;
}
this->Refresh = false;
}
return 1;
}
//------------------------------------------------------------------------------
// RequestData
int vtkOpenFOAMReader::RequestData(vtkInformation* vtkNotUsed(request),
vtkInformationVector** vtkNotUsed(inputVector), vtkInformationVector* outputVector)
{
vtkInformation* outInfo = outputVector->GetInformationObject(0);
auto* output = vtkMultiBlockDataSet::SafeDownCast(outInfo->Get(vtkDataObject::DATA_OBJECT()));
// Times
{
int nTimes(0); // Also used for logic
double requestedTimeValue(0);
if (outInfo->Has(vtkStreamingDemandDrivenPipeline::UPDATE_TIME_STEP()))
{
nTimes = outInfo->Length(vtkStreamingDemandDrivenPipeline::TIME_STEPS());
// UPDATE_TIME_STEP is unreliable if there is only one time-step
requestedTimeValue =
(1 == nTimes ? outInfo->Get(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), 0)
: outInfo->Get(vtkStreamingDemandDrivenPipeline::UPDATE_TIME_STEP()));
}
if (nTimes) // nTimes also used for logic
{
outInfo->Set(vtkDataObject::DATA_TIME_STEP(), requestedTimeValue);
this->SetTimeValue(requestedTimeValue);
}
}
if (this->Parent == this)
{
output->GetFieldData()->AddArray(this->CasePath);
if (!this->MakeMetaDataAtTimeStep(false))
{
return 0;
}
this->CurrentReaderIndex = 0;
}
// Create dataset
int ret = 1;
vtkOpenFOAMReaderPrivate* reader;
// Avoid wrapping single region as a multiblock dataset
if (this->Readers->GetNumberOfItems() == 1 &&
(reader = vtkOpenFOAMReaderPrivate::SafeDownCast(this->Readers->GetItemAsObject(0)))
->GetRegionName()
.empty())
{
ret = reader->RequestData(output);
this->Parent->CurrentReaderIndex++;
}
else
{
this->Readers->InitTraversal();
while ((reader = vtkOpenFOAMReaderPrivate::SafeDownCast(
this->Readers->GetNextItemAsObject())) != nullptr)
{
auto subOutput = vtkSmartPointer<vtkMultiBlockDataSet>::New();
if (reader->RequestData(subOutput))
{
std::string regionName(reader->GetRegionName());
if (regionName.empty())
{
regionName = "defaultRegion"; // == OpenFOAM "region0"
}
if (reader->HasPolyMesh()) // sanity check
{
::AppendBlock(output, subOutput, regionName);
}
}
else
{
ret = 0;
}
this->Parent->CurrentReaderIndex++;
}
}
if (this->Parent == this) // update only if this is the top-level reader
{
this->UpdateStatus();
}
return ret;
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::SetTimeInformation(
vtkInformationVector* outputVector, vtkDoubleArray* timeValues)
{
const vtkIdType nTimes = timeValues->GetNumberOfTuples();
vtkInformation* outInfo = outputVector->GetInformationObject(0);
double timeRange[2];
if (nTimes)
{
timeRange[0] = timeValues->GetValue(0);
timeRange[1] = timeValues->GetValue(nTimes - 1);
outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), timeValues->GetPointer(0),
static_cast<int>(nTimes));
}
else
{
timeRange[0] = timeRange[1] = 0.0;
outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_STEPS(), timeRange, 0);
}
outInfo->Set(vtkStreamingDemandDrivenPipeline::TIME_RANGE(), timeRange, 2);
}
//------------------------------------------------------------------------------
int vtkOpenFOAMReader::MakeInformationVector(vtkInformationVector* outputVector,
const vtkStdString& procName, vtkStringArray* timeNames, vtkDoubleArray* timeValues)
{
this->FileNameOld->assign(this->FileName);
// Clear prior case information
this->Readers->RemoveAllItems();
// Recreate case information
vtkStdString casePath, controlDictPath;
this->CreateCasePath(casePath, controlDictPath);
if (!procName.empty())
{
casePath += procName + "/";
}
// Check for mesh directory and subregions.
// Should check contents of constant/regionProperties, but that file may be missing so instead
// check the existence of files in constant/polyMesh and constant/{region}/polyMesh.
// A multi-region case will often not have the default region
bool hasDefaultRegion = false;
std::vector<std::string> regionNames;
{
const std::string constantPath(casePath + "constant/");
vtkNew<vtkDirectory> dir;
if (!dir->Open(constantPath.c_str()))
{
vtkErrorMacro(<< "Cannot open directory: " << constantPath);
return 0;
}
hasDefaultRegion = vtkFoamFile::IsFile(constantPath + "polyMesh/faces", true);
for (vtkIdType entryi = 0; entryi < dir->GetNumberOfFiles(); ++entryi)
{
std::string subDir(dir->GetFile(entryi));
if (subDir != "." && subDir != ".." && dir->FileIsDirectory(subDir.c_str()) &&
vtkFoamFile::IsFile((constantPath + subDir + "/polyMesh/faces"), true))
{
regionNames.push_back(std::move(subDir));
}
}
if (!hasDefaultRegion && regionNames.empty())
{
vtkErrorMacro(<< this->FileName << " contains no meshes.");
return 0;
}
// Consistently ordered
std::sort(regionNames.begin(), regionNames.end());
}
vtkIdType nTimeNames = 0;
vtkIdType nTimeValues = 0;
if (((timeNames != nullptr) && (nTimeNames = timeNames->GetNumberOfTuples()) != 0) &&
((timeValues != nullptr) && (nTimeValues = timeValues->GetNumberOfTuples()) != 0) &&
(nTimeNames != nTimeValues))
{
vtkErrorMacro(<< "Number of time values " << nTimeValues << " != number of time names "
<< nTimeNames);
return 0;
}
auto masterReader = vtkSmartPointer<vtkOpenFOAMReaderPrivate>::New();
if (nTimeNames && nTimeNames == nTimeValues)
{
if (!masterReader->MakeInformationVector(
casePath, procName, this->Parent, timeNames, timeValues, hasDefaultRegion))
{
return 0;
}
}
else
{
if (!masterReader->MakeInformationVector(
casePath, controlDictPath, procName, this->Parent, hasDefaultRegion))
{
return 0;
}
}
nTimeValues = masterReader->GetTimeValues()->GetNumberOfTuples();
if (!nTimeValues)
{
vtkErrorMacro(<< this->FileName << " contains no timestep data.");
}
if (hasDefaultRegion)
{
this->Readers->AddItem(masterReader);
}
// Add subregions
for (const auto& regionName : regionNames)
{
auto subReader = vtkSmartPointer<vtkOpenFOAMReaderPrivate>::New();
subReader->SetupInformation(casePath, regionName, procName, masterReader);
this->Readers->AddItem(subReader);
}
this->Parent->NumberOfReaders += this->Readers->GetNumberOfItems();
if (outputVector != nullptr)
{
this->SetTimeInformation(outputVector, masterReader->GetTimeValues());
}
if (this->Parent == this)
{
this->CreateCharArrayFromString(this->CasePath, "CasePath", casePath);
}
return 1;
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::CreateCasePath(vtkStdString& casePath, vtkStdString& controlDictPath)
{
#if defined(_WIN32)
const std::string pathFindSeparator = "/\\", pathSeparator = "\\";
#else
const std::string pathFindSeparator = "/", pathSeparator = "/";
#endif
controlDictPath = this->FileName;
// determine the case directory and path to controlDict
auto pos = controlDictPath.find_last_of(pathFindSeparator);
if (pos == std::string::npos)
{
// if there's no prepending path, prefix with the current directory
controlDictPath = "." + pathSeparator + controlDictPath;
pos = 1;
}
if (controlDictPath.substr(pos + 1, 11) == "controlDict")
{
// remove trailing "/controlDict*"
casePath = controlDictPath.substr(0, pos - 1);
if (casePath == ".")
{
casePath = ".." + pathSeparator;
}
else
{
pos = casePath.find_last_of(pathFindSeparator);
if (pos == std::string::npos)
{
casePath = "." + pathSeparator;
}
else
{
// remove trailing "system" (or any other directory name)
casePath.erase(pos + 1); // preserve the last "/"
}
}
}
else
{
// if the file is named other than controlDict*, use the directory
// containing the file as case directory
casePath = controlDictPath.substr(0, pos + 1);
controlDictPath = casePath + "system" + pathSeparator + "controlDict";
}
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::AddSelectionNames(
vtkDataArraySelection* selections, vtkStringArray* objects)
{
objects->Squeeze();
vtkSortDataArray::Sort(objects);
for (int nameI = 0; nameI < objects->GetNumberOfValues(); nameI++)
{
selections->AddArray(objects->GetValue(nameI).c_str());
}
}
//------------------------------------------------------------------------------
bool vtkOpenFOAMReader::SetTimeValue(const double timeValue)
{
bool modified = false;
this->Readers->InitTraversal();
for (vtkObject* obj; (obj = this->Readers->GetNextItemAsObject()) != nullptr;)
{
// Is private implementation
{
auto* reader = vtkOpenFOAMReaderPrivate::SafeDownCast(obj);
if (reader)
{
const vtkMTimeType mTime = reader->GetMTime();
reader->SetTimeValue(timeValue);
if (reader->GetMTime() != mTime)
{
modified = true;
}
continue;
}
}
// Is sub-reader for derived type
{
auto* reader = vtkOpenFOAMReader::SafeDownCast(obj);
if (reader)
{
if (reader->SetTimeValue(timeValue))
{
modified = true;
}
continue;
}
}
}
return modified;
}
//------------------------------------------------------------------------------
double vtkOpenFOAMReader::GetTimeValue() const
{
vtkObject* obj = this->Readers->GetNumberOfItems() ? this->Readers->GetItemAsObject(0) : nullptr;
if (obj)
{
// Is private implementation
{
auto* reader = vtkOpenFOAMReaderPrivate::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeValue();
}
}
// Is sub-reader for derived type
{
auto* reader = vtkOpenFOAMReader::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeValue();
}
}
}
return 0;
}
//------------------------------------------------------------------------------
vtkStringArray* vtkOpenFOAMReader::GetTimeNames()
{
vtkObject* obj = this->Readers->GetNumberOfItems() ? this->Readers->GetItemAsObject(0) : nullptr;
if (obj)
{
// Is private implementation
{
auto* reader = vtkOpenFOAMReaderPrivate::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeNames();
}
}
// Is sub-reader for derived type
{
auto* reader = vtkOpenFOAMReader::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeNames();
}
}
}
return nullptr;
}
//------------------------------------------------------------------------------
vtkDoubleArray* vtkOpenFOAMReader::GetTimeValues()
{
vtkObject* obj = this->Readers->GetNumberOfItems() ? this->Readers->GetItemAsObject(0) : nullptr;
if (obj)
{
// Is private implementation
{
auto* reader = vtkOpenFOAMReaderPrivate::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeValues();
}
}
// Is sub-reader for derived type
{
auto* reader = vtkOpenFOAMReader::SafeDownCast(obj);
if (reader)
{
return reader->GetTimeValues();
}
}
}
return nullptr;
}
//------------------------------------------------------------------------------
int vtkOpenFOAMReader::MakeMetaDataAtTimeStep(const bool listNextTimeStep)
{
vtkNew<vtkStringArray> cellDataNames;
vtkNew<vtkStringArray> pointDataNames;
vtkNew<vtkStringArray> lagrangianDataNames;
vtkNew<vtkStringArray> lagrangianPaths;
if (listNextTimeStep)
{
this->LagrangianPaths->Initialize();
}
else
{
lagrangianPaths->DeepCopy(this->LagrangianPaths);
}
int ret = 1;
vtkOpenFOAMReaderPrivate* reader;
this->Readers->InitTraversal();
while ((reader = vtkOpenFOAMReaderPrivate::SafeDownCast(this->Readers->GetNextItemAsObject())) !=
nullptr)
{
ret *= reader->MakeMetaDataAtTimeStep(
cellDataNames, pointDataNames, lagrangianDataNames, listNextTimeStep);
appendUniq(lagrangianPaths, reader->GetLagrangianPaths());
}
this->AddSelectionNames(this->Parent->CellDataArraySelection, cellDataNames);
this->AddSelectionNames(this->Parent->PointDataArraySelection, pointDataNames);
this->AddSelectionNames(this->Parent->LagrangianDataArraySelection, lagrangianDataNames);
lagrangianPaths->Squeeze();
vtkSortDataArray::Sort(lagrangianPaths);
// Combine for all regions
this->LagrangianPaths->DeepCopy(lagrangianPaths);
return ret;
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::CreateCharArrayFromString(
vtkCharArray* array, const char* name, vtkStdString& string)
{
array->Initialize();
array->SetName(name);
const size_t len = string.length();
char* ptr = array->WritePointer(0, static_cast<vtkIdType>(len + 1));
memcpy(ptr, string.c_str(), len);
ptr[len] = '\0';
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::UpdateStatus()
{
// update selection MTimes
this->PatchSelectionMTimeOld = this->PatchDataArraySelection->GetMTime();
this->CellSelectionMTimeOld = this->CellDataArraySelection->GetMTime();
this->PointSelectionMTimeOld = this->PointDataArraySelection->GetMTime();
this->LagrangianSelectionMTimeOld = this->LagrangianDataArraySelection->GetMTime();
this->CreateCellToPointOld = this->CreateCellToPoint;
this->DecomposePolyhedraOld = this->DecomposePolyhedra;
this->PositionsIsIn13FormatOld = this->PositionsIsIn13Format;
this->ReadZonesOld = this->ReadZones;
this->SkipZeroTimeOld = this->SkipZeroTime;
this->ListTimeStepsByControlDictOld = this->ListTimeStepsByControlDict;
this->AddDimensionsToArrayNamesOld = this->AddDimensionsToArrayNames;
this->Use64BitLabelsOld = this->Use64BitLabels;
this->Use64BitFloatsOld = this->Use64BitFloats;
}
//------------------------------------------------------------------------------
void vtkOpenFOAMReader::UpdateProgress(double amount)
{
this->vtkAlgorithm::UpdateProgress(
(static_cast<double>(this->Parent->CurrentReaderIndex) + amount) /
static_cast<double>(this->Parent->NumberOfReaders));
}
VTK_ABI_NAMESPACE_END
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