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// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-License-Identifier: BSD-3-Clause
#include "vtkDataObjectToConduit.h"
#include "vtkAOSDataArrayTemplate.h"
#include "vtkCellData.h"
#include "vtkDataArray.h"
#include "vtkDataObject.h"
#include "vtkDataSet.h"
#include "vtkFieldData.h"
#include "vtkImageData.h"
#include "vtkLogger.h"
#include "vtkPointData.h"
#include "vtkPointSet.h"
#include "vtkPoints.h"
#include "vtkPolyData.h"
#include "vtkRectilinearGrid.h"
#include "vtkSOADataArrayTemplate.h"
#include "vtkStringArray.h"
#include "vtkStructuredGrid.h"
#include "vtkTypeFloat32Array.h"
#include "vtkTypeFloat64Array.h"
#include "vtkTypeInt16Array.h"
#include "vtkTypeInt32Array.h"
#include "vtkTypeInt64Array.h"
#include "vtkTypeInt8Array.h"
#include "vtkTypeUInt16Array.h"
#include "vtkTypeUInt32Array.h"
#include "vtkTypeUInt64Array.h"
#include "vtkTypeUInt8Array.h"
#include "vtkUnstructuredGrid.h"
#include <catalyst_conduit.hpp>
namespace
{
//----------------------------------------------------------------------------
bool IsMixedShape(vtkUnstructuredGrid* unstructured_grid)
{
auto* cell_types = unstructured_grid->GetDistinctCellTypesArray();
return cell_types->GetNumberOfTuples() > 1;
}
//----------------------------------------------------------------------------
bool IsMixedShape(vtkPolyData* grid)
{
// WARNING: This is inefficient
vtkNew<vtkCellTypes> cell_types;
grid->GetCellTypes(cell_types);
return cell_types->GetNumberOfTypes() > 1;
}
//----------------------------------------------------------------------------
vtkCellArray* GetCells(vtkUnstructuredGrid* ugrid, int)
{
return ugrid->GetCells();
}
//----------------------------------------------------------------------------
vtkCellArray* GetCells(vtkPolyData* polydata, int cellType)
{
switch (cellType)
{
case VTK_POLYGON:
case VTK_QUAD:
case VTK_TRIANGLE:
return polydata->GetPolys();
case VTK_LINE:
return polydata->GetLines();
case VTK_VERTEX:
return polydata->GetVerts();
default:
vtkLog(ERROR, << "Unsupported cell type in polydata. Cell type: "
<< vtkCellTypes::GetClassNameFromTypeId(cellType));
return nullptr;
}
}
//----------------------------------------------------------------------------
bool IsSignedIntegralType(int data_type)
{
constexpr bool is_char_type_signed = (CHAR_MIN == SCHAR_MIN) && (CHAR_MAX == SCHAR_MAX);
return (is_char_type_signed && (data_type == VTK_CHAR)) || (data_type == VTK_SIGNED_CHAR) ||
(data_type == VTK_SHORT) || (data_type == VTK_INT) || (data_type == VTK_LONG) ||
(data_type == VTK_ID_TYPE) || (data_type == VTK_LONG_LONG) || (data_type == VTK_TYPE_INT64);
}
//----------------------------------------------------------------------------
bool IsUnsignedIntegralType(int data_type)
{
constexpr bool is_char_type_signed = (CHAR_MIN == SCHAR_MIN) && (CHAR_MAX == SCHAR_MAX);
return (!is_char_type_signed && (data_type == VTK_CHAR)) || (data_type == VTK_UNSIGNED_CHAR) ||
(data_type == VTK_UNSIGNED_SHORT) || (data_type == VTK_UNSIGNED_INT) ||
(data_type == VTK_UNSIGNED_LONG) || (data_type == VTK_ID_TYPE) ||
(data_type == VTK_UNSIGNED_LONG_LONG);
}
//----------------------------------------------------------------------------
bool IsFloatType(int data_type)
{
return ((data_type == VTK_FLOAT) || (data_type == VTK_DOUBLE));
}
//----------------------------------------------------------------------------
bool ConvertDataArrayToMCArray(vtkDataArray* data_array, int offset, int stride,
conduit_cpp::Node& conduit_node, int array_size = -1)
{
stride = std::max(stride, 1);
conduit_index_t number_of_elements;
if (array_size == -1)
{
number_of_elements = data_array->GetNumberOfValues() / stride;
}
else
{
number_of_elements = array_size / stride;
}
int data_type = data_array->GetDataType();
int data_type_size = data_array->GetDataTypeSize();
int array_type = data_array->GetArrayType();
if (array_type != vtkAbstractArray::AoSDataArrayTemplate)
{
vtkLog(ERROR, "Unsupported data array type: " << data_array->GetArrayTypeAsString());
return false;
}
// The code below uses the legacy GetVoidPointer on purpose to get zero copy.
bool is_supported = true;
if (IsSignedIntegralType(data_type))
{
switch (data_type_size)
{
case 1:
conduit_node.set_external_int8_ptr((conduit_int8*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_int8), stride * sizeof(conduit_int8));
break;
case 2:
conduit_node.set_external_int16_ptr((conduit_int16*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_int16), stride * sizeof(conduit_int16));
break;
case 4:
conduit_node.set_external_int32_ptr((conduit_int32*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_int32), stride * sizeof(conduit_int32));
break;
case 8:
conduit_node.set_external_int64_ptr((conduit_int64*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_int64), stride * sizeof(conduit_int64));
break;
default:
is_supported = false;
}
}
else if (IsUnsignedIntegralType(data_type))
{
switch (data_type_size)
{
case 1:
conduit_node.set_external_uint8_ptr((conduit_uint8*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_uint8), stride * sizeof(conduit_uint8));
break;
case 2:
conduit_node.set_external_uint16_ptr((conduit_uint16*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_uint16), stride * sizeof(conduit_uint16));
break;
case 4:
conduit_node.set_external_uint32_ptr((conduit_uint32*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_uint32), stride * sizeof(conduit_uint32));
break;
case 8:
conduit_node.set_external_uint64_ptr((conduit_uint64*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_uint64), stride * sizeof(conduit_uint64));
break;
default:
is_supported = false;
}
}
else if (IsFloatType(data_type))
{
switch (data_type_size)
{
case 4:
conduit_node.set_external_float32_ptr((conduit_float32*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_float32), stride * sizeof(conduit_float32));
break;
case 8:
conduit_node.set_external_float64_ptr((conduit_float64*)data_array->GetVoidPointer(0),
number_of_elements, offset * sizeof(conduit_float64), stride * sizeof(conduit_float64));
break;
default:
is_supported = false;
}
}
if (!is_supported)
{
vtkLog(ERROR,
"Unsupported data array type: " << data_array->GetDataTypeAsString()
<< " size: " << data_type_size << " type: " << array_type);
}
return is_supported;
}
//----------------------------------------------------------------------------
bool ConvertDataArrayToMCArray(vtkDataArray* data_array, conduit_cpp::Node& conduit_node,
const std::vector<std::string> names = std::vector<std::string>())
{
size_t nComponents = data_array->GetNumberOfComponents();
if (nComponents > 1)
{
bool success = true;
for (size_t i = 0; i < nComponents; ++i)
{
conduit_cpp::Node component_node;
if (i < names.size())
{
component_node = conduit_node[names[i]];
}
else
{
component_node = conduit_node[std::to_string(i)];
}
success = success && ConvertDataArrayToMCArray(data_array, i, nComponents, component_node);
}
return success;
}
else
{
return ConvertDataArrayToMCArray(data_array, 0, 0, conduit_node);
}
}
//----------------------------------------------------------------------------
bool FillMixedShape(vtkPolyData* dataset, conduit_cpp::Node& topologies_node)
{
(void)dataset; // Avoid compiler warning for unused variable
(void)topologies_node;
return false; // Not implemented (yet)
}
//----------------------------------------------------------------------------
bool FillMixedShape(vtkUnstructuredGrid* dataset, conduit_cpp::Node& topologies_node)
{
const auto number_of_cells = dataset->GetNumberOfCells();
topologies_node["elements/shape"].set("mixed");
auto shape_map = topologies_node["elements/shape_map"];
shape_map["hex"] = VTK_HEXAHEDRON;
shape_map["tet"] = VTK_TETRA;
shape_map["quad"] = VTK_QUAD;
shape_map["tri"] = VTK_TRIANGLE;
shape_map["polygonal"] = VTK_POLYGON;
auto offsets = dataset->GetCells()->GetOffsetsArray();
auto shapes = dataset->GetCellTypesArray();
vtkNew<vtkIdTypeArray> sizes;
sizes->SetName("vtkCellSizes");
sizes->SetNumberOfTuples(number_of_cells);
for (vtkIdType i = 0; i < number_of_cells; i++)
{
sizes->SetValue(i, dataset->GetCellSize(i));
}
// We need allocated heap memory for the size array, which is not stored natively in the
// dataset. To avoid Conduit making a copy or a memory leak, we attach the array to the
// dataset. Warning : this creates a side-effect, impacting the input dataset by adding a
// field.
dataset->GetCellData()->AddArray(sizes);
auto offsets_node = topologies_node["elements/offsets"];
auto shapes_node = topologies_node["elements/shapes"];
auto sizes_node = topologies_node["elements/sizes"];
// Conduit offsets array is of size `number_of_cells` and not `number_of_cells + 1`.
if (!ConvertDataArrayToMCArray(offsets, 0, 0, offsets_node, number_of_cells) ||
!ConvertDataArrayToMCArray(shapes, shapes_node) ||
!ConvertDataArrayToMCArray(sizes, sizes_node))
{
vtkLogF(ERROR, "ConvertDataArrayToMCArray failed for mixed shapes unstructured grid.");
return false;
}
return true;
}
//----------------------------------------------------------------------------
template <class T>
bool FillTopology(T* dataset, conduit_cpp::Node& conduit_node)
{
const char* datasetType = dataset->GetClassName();
auto coords_node = conduit_node["coordsets/coords"];
coords_node["type"] = "explicit";
auto values_node = coords_node["values"];
auto* points = dataset->GetPoints();
if (points)
{
if (!ConvertDataArrayToMCArray(points->GetData(), values_node, { "x", "y", "z" }))
{
vtkLogF(ERROR, "ConvertPoints failed for %s.", datasetType);
return false;
}
}
else
{
values_node["x"] = std::vector<float>();
values_node["y"] = std::vector<float>();
values_node["z"] = std::vector<float>();
}
auto topologies_node = conduit_node["topologies/mesh"];
topologies_node["type"] = "unstructured";
topologies_node["coordset"] = "coords";
int cell_type = VTK_VERTEX;
if (IsMixedShape(dataset))
{
if (!FillMixedShape(dataset, topologies_node))
{
vtkLogF(ERROR, "%s with mixed shape type partially supported.", datasetType);
return false;
}
}
else
{
const auto number_of_cells = dataset->GetNumberOfCells();
if (number_of_cells > 0)
{
cell_type = dataset->GetCellType(0);
}
switch (cell_type)
{
case VTK_HEXAHEDRON:
topologies_node["elements/shape"] = "hex";
break;
case VTK_TETRA:
topologies_node["elements/shape"] = "tet";
break;
case VTK_POLYGON:
topologies_node["elements/shape"] = "polygonal";
break;
case VTK_QUAD:
topologies_node["elements/shape"] = "quad";
break;
case VTK_TRIANGLE:
topologies_node["elements/shape"] = "tri";
break;
case VTK_LINE:
topologies_node["elements/shape"] = "line";
break;
case VTK_VERTEX:
topologies_node["elements/shape"] = "point";
break;
default:
vtkLogF(ERROR, "Unsupported cell type in %s. Cell type: %s", datasetType,
vtkCellTypes::GetClassNameFromTypeId(cell_type));
return false;
}
}
auto cell_connectivity = GetCells(dataset, cell_type);
auto connectivity_node = topologies_node["elements/connectivity"];
if (!ConvertDataArrayToMCArray(cell_connectivity->GetConnectivityArray(), connectivity_node))
{
vtkLogF(ERROR, "ConvertDataArrayToMCArray failed for %s.", datasetType);
return false;
}
return true;
}
//----------------------------------------------------------------------------
bool FillTopology(vtkDataSet* data_set, conduit_cpp::Node& conduit_node)
{
if (auto imageData = vtkImageData::SafeDownCast(data_set))
{
auto coords_node = conduit_node["coordsets/coords"];
coords_node["type"] = "uniform";
int* dimensions = imageData->GetDimensions();
coords_node["dims/i"] = dimensions[0];
coords_node["dims/j"] = dimensions[1];
coords_node["dims/k"] = dimensions[2];
double* origin = imageData->GetOrigin();
coords_node["origin/x"] = origin[0];
coords_node["origin/y"] = origin[1];
coords_node["origin/z"] = origin[2];
double* spacing = imageData->GetSpacing();
coords_node["spacing/dx"] = spacing[0];
coords_node["spacing/dy"] = spacing[1];
coords_node["spacing/dz"] = spacing[2];
auto topologies_node = conduit_node["topologies/mesh"];
topologies_node["type"] = "uniform";
topologies_node["coordset"] = "coords";
}
else if (auto rectilinear_grid = vtkRectilinearGrid::SafeDownCast(data_set))
{
auto coords_node = conduit_node["coordsets/coords"];
coords_node["type"] = "rectilinear";
auto x_values_node = coords_node["values/x"];
if (!ConvertDataArrayToMCArray(rectilinear_grid->GetXCoordinates(), x_values_node))
{
vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/x");
return false;
}
auto y_values_node = coords_node["values/y"];
if (!ConvertDataArrayToMCArray(rectilinear_grid->GetYCoordinates(), y_values_node))
{
vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/y");
return false;
}
auto z_values_node = coords_node["values/z"];
if (!ConvertDataArrayToMCArray(rectilinear_grid->GetZCoordinates(), z_values_node))
{
vtkLog(ERROR, "Failed ConvertDataArrayToMCArray for values/z");
return false;
}
auto topologies_node = conduit_node["topologies/mesh"];
topologies_node["type"] = "rectilinear";
topologies_node["coordset"] = "coords";
}
else if (auto structured_grid = vtkStructuredGrid::SafeDownCast(data_set))
{
auto coords_node = conduit_node["coordsets/coords"];
coords_node["type"] = "explicit";
auto values_node = coords_node["values"];
if (!ConvertDataArrayToMCArray(
structured_grid->GetPoints()->GetData(), values_node, { "x", "y", "z" }))
{
vtkLog(ERROR, "Failed ConvertPoints for structured grid");
return false;
}
auto topologies_node = conduit_node["topologies/mesh"];
topologies_node["type"] = "structured";
topologies_node["coordset"] = "coords";
int dimensions[3];
structured_grid->GetDimensions(dimensions);
topologies_node["elements/dims/i"] = dimensions[0];
topologies_node["elements/dims/j"] = dimensions[1];
topologies_node["elements/dims/k"] = dimensions[2];
}
else if (auto unstructured_grid = vtkUnstructuredGrid::SafeDownCast(data_set))
{
return FillTopology(unstructured_grid, conduit_node);
}
else if (auto polydata = vtkPolyData::SafeDownCast(data_set))
{
return FillTopology(polydata, conduit_node);
}
else
{
vtkLog(ERROR, "Unsupported data set type: " << data_set->GetClassName());
return false;
}
return true;
}
//----------------------------------------------------------------------------
bool FillFields(
vtkFieldData* field_data, const std::string& association, conduit_cpp::Node& conduit_node)
{
bool is_success = true;
int array_count = field_data->GetNumberOfArrays();
for (int array_index = 0; is_success && array_index < array_count; ++array_index)
{
auto array = field_data->GetAbstractArray(array_index);
auto name = array->GetName();
if (!name)
{
vtkLogF(WARNING, "Unnamed array, it will be ignored.");
continue;
}
if (association.empty())
{
// VTK Field Data are translated to state/fields childs.
auto field_node = conduit_node["state/fields"][name];
if (auto string_array = vtkStringArray::SafeDownCast(array))
{
if (string_array->GetNumberOfValues() > 0)
{
field_node.set_string(string_array->GetValue(0));
if (string_array->GetNumberOfValues() > 1)
{
vtkLog(WARNING,
"The string array '" << string_array->GetName()
<< "' contains more than one element. Only the first one will "
"be converted to conduit node.");
}
}
}
else if (auto data_array = vtkDataArray::SafeDownCast(array))
{
is_success = ConvertDataArrayToMCArray(data_array, field_node);
}
else
{
vtkLogF(ERROR, "Unknown array type '%s' in Field Data.", name);
is_success = false;
}
}
else if (auto data_array = vtkDataArray::SafeDownCast(array))
{
auto field_node = conduit_node["fields"][name];
field_node["association"] = association;
field_node["topology"] = "mesh";
field_node["volume_dependent"] = "false";
auto values_node = field_node["values"];
is_success = ConvertDataArrayToMCArray(data_array, values_node);
}
else
{
vtkLogF(ERROR, "Unknown array type '%s' associated to: %s", name, association.c_str());
is_success = false;
}
}
return is_success;
}
//----------------------------------------------------------------------------
bool FillFields(vtkDataSet* data_set, conduit_cpp::Node& conduit_node)
{
if (auto cell_data = data_set->GetCellData())
{
if (!FillFields(cell_data, "element", conduit_node))
{
vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with element failed.");
return false;
}
}
if (auto point_data = data_set->GetPointData())
{
if (!FillFields(point_data, "vertex", conduit_node))
{
vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with vertex failed.");
return false;
}
}
if (auto field_data = data_set->GetFieldData())
{
if (!FillFields(field_data, "", conduit_node))
{
vtkVLog(vtkLogger::VERBOSITY_ERROR, "FillFields with field data failed.");
return false;
}
}
return true;
}
//----------------------------------------------------------------------------
bool FillConduitNodeFromDataSet(vtkDataSet* data_set, conduit_cpp::Node& conduit_node)
{
return FillFields(data_set, conduit_node) && FillTopology(data_set, conduit_node);
}
} // anonymous namespace
namespace vtkDataObjectToConduit
{
VTK_ABI_NAMESPACE_BEGIN
//----------------------------------------------------------------------------
bool FillConduitNode(vtkDataObject* data_object, conduit_cpp::Node& conduit_node)
{
auto data_set = vtkDataSet::SafeDownCast(data_object);
if (!data_set)
{
vtkLogF(ERROR, "Only Data Set objects are supported in vtkDataObjectToConduit.");
return false;
}
return FillConduitNodeFromDataSet(data_set, conduit_node);
}
VTK_ABI_NAMESPACE_END
} // vtkDataObjectToConduit namespace
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