1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
|
// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-License-Identifier: BSD-3-Clause
/**
* @class vtkBiomTableReader
* @brief read vtkTable from a .biom input file
*
* vtkBiomTableReader is a source object that reads ASCII biom data files.
* The output of this reader is a single vtkTable data object.
* @sa
* vtkTable vtkTableReader vtkDataReader
*/
#ifndef vtkBiomTableReader_h
#define vtkBiomTableReader_h
#include "vtkIOInfovisModule.h" // For export macro
#include "vtkTableReader.h"
VTK_ABI_NAMESPACE_BEGIN
class vtkTable;
class vtkVariant;
class VTKIOINFOVIS_EXPORT vtkBiomTableReader : public vtkTableReader
{
public:
static vtkBiomTableReader* New();
vtkTypeMacro(vtkBiomTableReader, vtkTableReader);
void PrintSelf(ostream& os, vtkIndent indent) override;
///@{
/**
* Get the output of this reader.
*/
vtkTable* GetOutput();
vtkTable* GetOutput(int idx);
void SetOutput(vtkTable* output);
///@}
/**
* Actual reading happens here
*/
int ReadMeshSimple(VTK_FILEPATH const std::string& fname, vtkDataObject* output) override;
protected:
vtkBiomTableReader();
~vtkBiomTableReader() override;
int FillOutputPortInformation(int, vtkInformation*) override;
void ParseShape();
void ParseDataType();
void ParseSparseness();
void InitializeData();
void FillData(vtkVariant v);
void ParseSparseData();
void ParseDenseData();
void InsertValue(int row, int col, const std::string& value);
void ParseId();
void ParseColumns();
void ParseRows();
private:
std::string FileContents;
int NumberOfRows;
int NumberOfColumns;
int DataType;
bool Sparse;
vtkBiomTableReader(const vtkBiomTableReader&) = delete;
void operator=(const vtkBiomTableReader&) = delete;
};
VTK_ABI_NAMESPACE_END
#endif
|
